Itgae (integrin alpha E, epithelial-associated) - Rat Genome Database

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Gene: Itgae (integrin alpha E, epithelial-associated) Mus musculus
Analyze
Symbol: Itgae
Name: integrin alpha E, epithelial-associated
RGD ID: 732971
MGI Page MGI
Description: Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Located in external side of plasma membrane. Is expressed in several structures, including alimentary system; genitourinary system; lymph node; nasal septum; and nucleus pulposus. Orthologous to human ITGAE (integrin subunit alpha E).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A530055J10; alph; alpha-E1; alpha-M290; aM290; CD103; integrin alpha M290; integrin alpha-E; MGC183601
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,981,396 - 73,038,272 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,981,409 - 73,038,272 (+)EnsemblGRCm39 Ensembl
GRCm381173,090,505 - 73,147,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,090,583 - 73,147,446 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,904,097 - 72,960,951 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,906,778 - 72,963,636 (+)NCBIMGSCv36mm8
Celera1180,625,197 - 80,681,905 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. The integrins. Takada Y, etal., Genome Biol. 2007;8(5):215.
Additional References at PubMed
PMID:7882170   PMID:9685670   PMID:10349636   PMID:10352281   PMID:10898487   PMID:11042159   PMID:11076861   PMID:11086102   PMID:11217851   PMID:11311555   PMID:11311556   PMID:11696590  
PMID:11934870   PMID:12164945   PMID:12242333   PMID:12370250   PMID:12466851   PMID:12477932   PMID:12904471   PMID:14610273   PMID:14688336   PMID:14688352   PMID:15187103   PMID:15681774  
PMID:15845457   PMID:16141072   PMID:16141073   PMID:16216886   PMID:16227984   PMID:16455972   PMID:16565389   PMID:16585587   PMID:16723705   PMID:16769892   PMID:16869802   PMID:17429444  
PMID:17513734   PMID:17620361   PMID:18250468   PMID:18292524   PMID:18492951   PMID:18562709   PMID:18710932   PMID:18799693   PMID:19008373   PMID:19162441   PMID:19553521   PMID:19645708  
PMID:19893044   PMID:20008524   PMID:20008528   PMID:20038600   PMID:20039445   PMID:20421390   PMID:20565292   PMID:21267068   PMID:21345961   PMID:21525388   PMID:21562159   PMID:21573179  
PMID:21587207   PMID:21660938   PMID:21677750   PMID:21779359   PMID:21873635   PMID:22012243   PMID:22068168   PMID:22268142   PMID:22327568   PMID:22422267   PMID:22504644   PMID:22664873  
PMID:22687584   PMID:23034280   PMID:23395676   PMID:23632327   PMID:23733880   PMID:24162776   PMID:24194600   PMID:24670804   PMID:25312824   PMID:25322675   PMID:25525188   PMID:25527788  
PMID:25681437   PMID:25706747   PMID:26104914   PMID:26169940   PMID:26174764   PMID:26203637   PMID:26416905   PMID:26526996   PMID:26878989   PMID:27379516   PMID:27543429   PMID:27626380  
PMID:27760760   PMID:27820700   PMID:27861803   PMID:27869233   PMID:28108233   PMID:28423181   PMID:28628641   PMID:29374077   PMID:29543979   PMID:30598548   PMID:30700910   PMID:30865878  
PMID:31570722   PMID:32325033   PMID:32433498   PMID:32439709   PMID:32667911   PMID:33268774   PMID:33359357   PMID:33515805   PMID:33584680   PMID:34129058   PMID:34253059   PMID:34467254  
PMID:34861219   PMID:37341508   PMID:37707607   PMID:38077339   PMID:38135026   PMID:38355793  


Genomics

Comparative Map Data
Itgae
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,981,396 - 73,038,272 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,981,409 - 73,038,272 (+)EnsemblGRCm39 Ensembl
GRCm381173,090,505 - 73,147,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,090,583 - 73,147,446 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,904,097 - 72,960,951 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,906,778 - 72,963,636 (+)NCBIMGSCv36mm8
Celera1180,625,197 - 80,681,905 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.22NCBI
ITGAE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,714,628 - 3,801,188 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,714,628 - 3,801,188 (-)EnsemblGRCh38hg38GRCh38
GRCh37173,617,922 - 3,704,482 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,564,668 - 3,651,286 (-)NCBINCBI36Build 36hg18NCBI36
Build 34173,564,671 - 3,651,286NCBI
Celera173,629,624 - 3,716,332 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef173,508,127 - 3,594,881 (-)NCBIHuRef
CHM1_1173,627,230 - 3,713,866 (-)NCBICHM1_1
T2T-CHM13v2.0173,603,214 - 3,689,865 (-)NCBIT2T-CHM13v2.0
Itgae
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81058,203,331 - 58,262,606 (+)NCBIGRCr8
mRatBN7.21057,704,813 - 57,764,093 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1057,591,753 - 57,764,093 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1057,591,753 - 57,751,210 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1062,365,493 - 62,419,913 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01061,853,971 - 61,908,393 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01057,353,064 - 57,407,516 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01059,652,324 - 59,711,885 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1059,539,405 - 59,711,874 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01059,391,989 - 59,450,857 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1056,829,172 - 56,887,357 (+)NCBICelera
Cytogenetic Map10q24NCBI
Itgae
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546713,042,712 - 13,114,481 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546713,052,920 - 13,112,896 (+)NCBIChiLan1.0ChiLan1.0
ITGAE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21911,325,204 - 11,410,344 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11713,290,694 - 13,374,339 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,763,813 - 3,851,645 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1173,758,511 - 3,841,729 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl173,758,730 - 3,844,444 (-)Ensemblpanpan1.1panPan2
ITGAE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,510,846 - 47,596,830 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,533,305 - 47,596,209 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,693,946 - 46,758,709 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,377,007 - 48,441,856 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,378,185 - 48,441,334 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1947,154,687 - 47,219,366 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,443,915 - 47,508,339 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,499,773 - 47,564,748 (-)NCBIUU_Cfam_GSD_1.0
Itgae
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560255,450,241 - 55,508,679 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936677392,282 - 450,849 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936677392,352 - 450,929 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGAE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1249,810,051 - 49,877,731 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11249,810,050 - 49,878,142 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,720,275 - 51,809,551 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ITGAE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,215,758 - 3,288,801 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605918,496,232 - 18,580,496 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itgae
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247866,354,616 - 6,410,710 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247866,354,344 - 6,425,240 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Itgae
142 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:404
Count of miRNA genes:300
Interacting mature miRNAs:336
Transcripts:ENSMUST00000006101, ENSMUST00000102537
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse

Markers in Region
U12236  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,147,224 - 73,147,376UniSTSGRCm38
MGSCv371172,960,726 - 72,960,878UniSTSGRCm37
Celera1180,681,680 - 80,681,832UniSTS
Cytogenetic Map11B4UniSTS
cM Map1144.0UniSTS
Whitehead_YAC11 UniSTS
D11Jcs2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,119,933 - 73,120,165UniSTSGRCm38
MGSCv371172,933,435 - 72,933,667UniSTSGRCm37
Celera1180,654,540 - 80,654,786UniSTS
Cytogenetic Map11B4UniSTS
cM Map1144.0UniSTS
UniSTS:237527  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,136,100 - 73,136,309UniSTSGRCm38
MGSCv371172,949,602 - 72,949,811UniSTSGRCm37
Celera1180,670,561 - 80,670,770UniSTS
Cytogenetic Map11B4UniSTS
cM Map1144.0UniSTS
cM Map1147.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_189133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_189134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_189135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_189136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB036930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF289866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL670399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV204610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF453582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF983010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU234134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ386608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U12236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000006101   ⟹   ENSMUSP00000006101
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,981,409 - 73,038,272 (+)Ensembl
GRCm38.p6 Ensembl1173,090,583 - 73,147,446 (+)Ensembl
Ensembl Acc Id: ENSMUST00000102537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,981,409 - 73,025,660 (+)Ensembl
GRCm38.p6 Ensembl1173,090,583 - 73,134,834 (+)Ensembl
RefSeq Acc Id: NM_001361245   ⟹   NP_001348174
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,981,396 - 73,038,272 (+)NCBI
GRCm381173,090,583 - 73,147,449 (+)NCBI
Sequence:
RefSeq Acc Id: NM_008399   ⟹   NP_032425
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,981,396 - 73,038,272 (+)NCBI
GRCm381173,090,583 - 73,147,449 (+)NCBI
MGSCv371172,904,097 - 72,960,951 (+)RGD
Celera1180,625,197 - 80,681,905 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_189133
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,029,164 - 73,038,272 (+)NCBI
RefSeq Acc Id: NR_189134
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,029,164 - 73,038,272 (+)NCBI
RefSeq Acc Id: NR_189135
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,029,164 - 73,038,272 (+)NCBI
RefSeq Acc Id: NR_189136
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,029,164 - 73,038,272 (+)NCBI
RefSeq Acc Id: NP_032425   ⟸   NM_008399
- Peptide Label: isoform 1 precursor
- UniProtKB: B1AUD5 (UniProtKB/Swiss-Prot),   Q60677 (UniProtKB/Swiss-Prot),   A2T0Z1 (UniProtKB/TrEMBL),   Q3U4V9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001348174   ⟸   NM_001361245
- Peptide Label: isoform 3 precursor
- UniProtKB: Q3U4V9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000006101   ⟸   ENSMUST00000006101
Protein Domains
VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60677-F1-model_v2 AlphaFold Q60677 1-1167 view protein structure

Promoters
RGD ID:8675472
Promoter ID:EPDNEW_M15767
Type:initiation region
Name:Itgae_1
Description:Mus musculus integrin alpha E, epithelial-associated , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381173,090,571 - 73,090,631EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1298377 AgrOrtholog
Ensembl Genes ENSMUSG00000005947 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000006101 ENTREZGENE
  ENSMUST00000006101.4 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.130 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bicelle-embedded integrin alpha(iib) transmembrane segment UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin domains. Chain A, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ntegrin, alpha v. Chain A, domain 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FG-GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Int_alpha_beta-p UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha_C_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha_Ig-like_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16407 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1298377 ENTREZGENE
NCBI Gene 16407 ENTREZGENE
PANTHER INTEGRIN ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INTEGRIN ALPHA-E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FG-GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_A_Ig_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Itgae PhenoGen
PRINTS INTEGRINA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFADOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FG_GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INTEGRIN_ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Int_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF69179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF69318 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2T0Z1 ENTREZGENE, UniProtKB/TrEMBL
  B1AUD5 ENTREZGENE
  B2RWT2_MOUSE UniProtKB/TrEMBL
  ITAE_MOUSE UniProtKB/Swiss-Prot
  Q3U4V9 ENTREZGENE, UniProtKB/TrEMBL
  Q60677 ENTREZGENE
  Q8BS01_MOUSE UniProtKB/TrEMBL
  Q99MV0_MOUSE UniProtKB/TrEMBL
UniProt Secondary B1AUD5 UniProtKB/Swiss-Prot