Ebf1 (early B cell factor 1) - Rat Genome Database

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Gene: Ebf1 (early B cell factor 1) Mus musculus
Analyze
Symbol: Ebf1
Name: early B cell factor 1
RGD ID: 732633
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within positive regulation of DNA-templated transcription. Located in nucleus. Is expressed in several structures, including central nervous system; embryo mesenchyme; hemolymphoid system; integumental system; and sensory organ. Used to study lipodystrophy. Orthologous to human EBF1 (EBF transcription factor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9830166E18Rik; AW990631; early B-cell factor; early B-cell factor 1; Ebf; O/E-; O/E-1; OE-1; Ol; Olf; Olf-1; Olf1; transcription factor COE1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391144,502,738 - 44,898,923 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1144,508,144 - 44,898,918 (+)EnsemblGRCm39 Ensembl
GRCm381144,618,100 - 45,008,096 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1144,617,317 - 45,008,091 (+)EnsemblGRCm38mm10GRCm38
MGSCv371144,431,636 - 44,818,677 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361144,461,557 - 44,848,598 (+)NCBIMGSCv36mm8
Celera1149,253,154 - 49,636,053 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1126.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-butoxyethanol  (EXP)
2-palmitoylglycerol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
arotinoid acid  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CHIR 99021  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
cortisol  (ISO)
crocidolite asbestos  (EXP,ISO)
Cuprizon  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
dioxygen  (ISO)
disodium selenite  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
exemestane  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
gentamycin  (ISO)
indometacin  (ISO)
inulin  (EXP)
L-methionine  (EXP)
lipopolysaccharide  (ISO)
lithium chloride  (EXP)
melphalan  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
niclosamide  (EXP)
O-methyleugenol  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
pirinixic acid  (EXP,ISO)
Ptaquiloside  (EXP)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
thapsigargin  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
tungsten  (EXP)
tunicamycin  (EXP,ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
XAV939  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (TAS)
nucleus  (IDA)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal anterior commissure pars posterior morphology  (IAGP)
abnormal B cell morphology  (IAGP)
abnormal bone marrow morphology  (IAGP)
abnormal bone ossification  (IAGP)
abnormal bone structure  (IAGP)
abnormal brain internal capsule morphology  (IAGP)
abnormal germinal center B cell physiology  (IAGP)
abnormal heart morphology  (IEA)
abnormal humoral immune response  (IEA)
abnormal lateral ganglionic eminence morphology  (IAGP)
abnormal liver morphology  (IEA)
abnormal long bone epiphyseal plate morphology  (IAGP)
abnormal lymph node morphology  (IEA)
abnormal lymphocyte morphology  (IEA)
abnormal metencephalon morphology  (IAGP)
abnormal placenta morphology  (IEA)
abnormal skin morphology  (IEA)
abnormal spleen morphology  (IEA)
abnormal striatum morphology  (IAGP)
abnormal trabecular bone morphology  (IAGP)
abnormal ventral striatum morphology  (IAGP)
absent B-1 B cells  (IAGP)
absent mature B cells  (IAGP)
arrested B cell differentiation  (IAGP)
decreased B cell number  (IEA)
decreased B cell proliferation  (IAGP)
decreased B-1 B cell number  (IAGP)
decreased B-2 B cell number  (IEA)
decreased body size  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased bone mineralization  (IAGP)
decreased effector memory CD4-positive, alpha-beta T cell number  (IEA)
decreased germinal center B cell number  (IAGP)
decreased IgD level  (IEA)
decreased IgG1 level  (IAGP)
decreased IgG3 level  (IAGP)
decreased IgM level  (IAGP)
decreased immature B cell number  (IAGP)
decreased marginal zone B cell number  (IAGP)
decreased NK cell number  (IEA)
decreased pre-B cell number  (IAGP)
decreased prepulse inhibition  (IEA)
decreased pro-B cell number  (IAGP)
decreased spleen germinal center number  (IAGP)
decreased striatum size  (IAGP)
decreased subcutaneous adipose tissue amount  (IAGP)
decreased transitional stage B cell number  (IAGP)
delayed bone mineralization  (IAGP)
enlarged heart  (IEA)
enlarged lymph nodes  (IEA)
enlarged spleen  (IEA)
hepatic steatosis  (IAGP)
increased alpha-beta T cell number  (IEA)
increased B cell apoptosis  (IAGP)
increased B cell number  (IAGP)
increased B-1a cell number  (IEA)
increased B-1b cell number  (IEA)
increased CD4-positive, alpha-beta T cell number  (IEA)
increased CD8-positive, alpha-beta T cell number  (IEA)
increased circulating serum albumin level  (IEA)
increased IgM level  (IEA)
increased osteoblast cell number  (IAGP)
increased osteoclast cell number  (IAGP)
increased single-positive T cell number  (IEA)
increased T cell number  (IEA)
increased trabecular bone thickness  (IAGP)
increased tumor necrosis factor secretion  (IEA)
no spontaneous movement  (IEA)
premature death  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
small heart  (IEA)
small spleen  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Playing TETris with DNA modifications. Delatte B, etal., EMBO J. 2014 Jun 2;33(11):1198-211. doi: 10.15252/embj.201488290. Epub 2014 May 13.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Neidhardt L, etal., Mech Dev 2000 Nov;98(1-2):77-94.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7542362   PMID:8012110   PMID:8227050   PMID:8491377   PMID:8497258   PMID:8756438   PMID:8876243   PMID:9070927   PMID:9105679   PMID:9151732   PMID:9389446   PMID:9630743  
PMID:9858563   PMID:10349636   PMID:10435576   PMID:10556054   PMID:10704382   PMID:10762365   PMID:10842061   PMID:10942392   PMID:11042159   PMID:11060228   PMID:11076752   PMID:11076861  
PMID:11163266   PMID:11493561   PMID:11498051   PMID:11725301   PMID:11869689   PMID:11934853   PMID:12062038   PMID:12077253   PMID:12118260   PMID:12139918   PMID:12391167   PMID:12406913  
PMID:12411960   PMID:12421703   PMID:12446773   PMID:12477932   PMID:12917357   PMID:12930780   PMID:14512296   PMID:14534138   PMID:14594818   PMID:14610273   PMID:14681479   PMID:14973295  
PMID:14993187   PMID:15210745   PMID:15226823   PMID:15229182   PMID:15261831   PMID:15280216   PMID:15361869   PMID:15469848   PMID:15618518   PMID:15647317   PMID:15778968   PMID:15917450  
PMID:15976074   PMID:16120638   PMID:16141072   PMID:16141073   PMID:16465594   PMID:16491081   PMID:16510500   PMID:16602821   PMID:16615895   PMID:16766714   PMID:16774995   PMID:16818446  
PMID:16919269   PMID:16925795   PMID:16962668   PMID:16971467   PMID:17060461   PMID:17101802   PMID:17151198   PMID:17444492   PMID:17460091   PMID:17493606   PMID:17721516   PMID:17872391  
PMID:17880938   PMID:18094027   PMID:18176567   PMID:18199763   PMID:18287559   PMID:18329011   PMID:18338816   PMID:18434421   PMID:18443282   PMID:18552207   PMID:18566132   PMID:18566404  
PMID:18606452   PMID:18694563   PMID:18714008   PMID:18799476   PMID:18799693   PMID:19027001   PMID:19030180   PMID:19122139   PMID:19130908   PMID:19208226   PMID:19243017   PMID:19345119  
PMID:19386638   PMID:19549820   PMID:19632216   PMID:19946273   PMID:20008041   PMID:20059953   PMID:20172967   PMID:20211142   PMID:20214815   PMID:20331442   PMID:20385820   PMID:20412781  
PMID:20451411   PMID:20534675   PMID:20621716   PMID:20826655   PMID:20876732   PMID:20943929   PMID:20965576   PMID:21068058   PMID:21302255   PMID:21435555   PMID:21469119   PMID:21606506  
PMID:21652681   PMID:21873635   PMID:21884937   PMID:21971554   PMID:22194471   PMID:22421355   PMID:22431510   PMID:22472950   PMID:22473956   PMID:22491945   PMID:22514301   PMID:22665574  
PMID:22735158   PMID:22988430   PMID:23019372   PMID:23042297   PMID:23213261   PMID:23395374   PMID:23395800   PMID:23444355   PMID:23499423   PMID:23569325   PMID:23623550   PMID:23684985  
PMID:23812095   PMID:24068669   PMID:24078629   PMID:24082127   PMID:24146773   PMID:24172684   PMID:24174531   PMID:24336287   PMID:24351932   PMID:24451661   PMID:24509509   PMID:24786561  
PMID:24799694   PMID:24856929   PMID:24930700   PMID:24952961   PMID:25312643   PMID:25344725   PMID:25631876   PMID:25654255   PMID:25762221   PMID:25838350   PMID:25966682   PMID:26056231  
PMID:26490861   PMID:26511239   PMID:26659141   PMID:26982363   PMID:27452460   PMID:27600842   PMID:27655933   PMID:27657450   PMID:27770010   PMID:27798109   PMID:27807034   PMID:27889898  
PMID:27913602   PMID:28049691   PMID:28213137   PMID:28280206   PMID:28289129   PMID:28472858   PMID:28483978   PMID:28533268   PMID:28921616   PMID:28933695   PMID:29031500   PMID:29137925  
PMID:29181981   PMID:29513653   PMID:29563184   PMID:29925996   PMID:29967281   PMID:30127719   PMID:30177526   PMID:30413696   PMID:30635555   PMID:30658714   PMID:30692221   PMID:30796806  
PMID:30843579   PMID:31405952   PMID:31491374   PMID:31729420   PMID:31758234   PMID:32066955   PMID:32130892   PMID:32154933   PMID:32170006   PMID:32179550   PMID:32398354   PMID:32561725  
PMID:33155406   PMID:33311457   PMID:33328221   PMID:33332417   PMID:33576044   PMID:33582307   PMID:33585465   PMID:33619557   PMID:33760820   PMID:33846639   PMID:34021049   PMID:34382935  
PMID:35044906   PMID:35137272   PMID:35156680   PMID:35175194   PMID:35273083   PMID:36048017   PMID:36064547   PMID:36081908   PMID:36167471   PMID:36943865   PMID:37115319   PMID:37549297  
PMID:37585469   PMID:37607607   PMID:37787076   PMID:38176908   PMID:38355793  


Genomics

Comparative Map Data
Ebf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391144,502,738 - 44,898,923 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1144,508,144 - 44,898,918 (+)EnsemblGRCm39 Ensembl
GRCm381144,618,100 - 45,008,096 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1144,617,317 - 45,008,091 (+)EnsemblGRCm38mm10GRCm38
MGSCv371144,431,636 - 44,818,677 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361144,461,557 - 44,848,598 (+)NCBIMGSCv36mm8
Celera1149,253,154 - 49,636,053 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1126.45NCBI
EBF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385158,695,920 - 159,099,916 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5158,695,920 - 159,099,916 (-)EnsemblGRCh38hg38GRCh38
GRCh375158,122,928 - 158,526,924 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365158,058,006 - 158,459,347 (-)NCBINCBI36Build 36hg18NCBI36
Build 345158,058,006 - 158,459,347NCBI
Celera5154,157,410 - 154,557,967 (-)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5153,220,108 - 153,621,641 (-)NCBIHuRef
CHM1_15157,555,693 - 157,959,313 (-)NCBICHM1_1
T2T-CHM13v2.05159,224,860 - 159,628,711 (-)NCBIT2T-CHM13v2.0
Ebf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81029,597,221 - 29,990,571 (+)NCBIGRCr8
mRatBN7.21029,095,858 - 29,489,142 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1029,099,933 - 29,487,665 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1033,844,602 - 34,231,502 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0102,383,005 - 2,769,924 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01028,815,202 - 29,202,068 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01023,654,849 - 24,051,627 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1023,661,013 - 24,050,209 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01023,518,314 - 23,912,932 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41029,770,047 - 30,163,200 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11030,132,189 - 30,164,249 (+)NCBI
Celera1028,580,160 - 28,966,044 (+)NCBICelera
Cytogenetic Map10q21NCBI
Ebf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540812,739,083 - 13,121,699 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540812,735,893 - 13,121,700 (-)NCBIChiLan1.0ChiLan1.0
EBF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24153,885,684 - 154,287,276 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15152,025,231 - 152,427,651 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05154,091,337 - 154,492,474 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15160,708,235 - 161,108,634 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5160,708,235 - 161,108,568 (-)Ensemblpanpan1.1panPan2
EBF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1451,378,314 - 51,765,768 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl451,379,233 - 51,763,035 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha451,265,503 - 51,657,405 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0451,807,031 - 52,199,508 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl451,807,074 - 52,197,970 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1451,636,811 - 52,028,674 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0451,742,320 - 52,134,292 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0452,259,568 - 52,651,762 (+)NCBIUU_Cfam_GSD_1.0
Ebf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213105,817,069 - 106,194,351 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365154,266,419 - 4,643,702 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EBF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1664,359,001 - 64,752,210 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11664,357,999 - 64,753,188 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21670,161,409 - 70,559,535 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EBF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12361,097,268 - 61,502,784 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2361,109,331 - 61,243,631 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603416,121,138 - 16,527,144 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ebf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473330,333,504 - 30,733,267 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473330,327,541 - 30,735,432 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ebf1
12996 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1498
Count of miRNA genes:646
Interacting mature miRNAs:800
Transcripts:ENSMUST00000081265, ENSMUST00000101326, ENSMUST00000106085, ENSMUST00000109268, ENSMUST00000135993, ENSMUST00000138452, ENSMUST00000140822, ENSMUST00000149997
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse

Markers in Region
AW742795  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,727,032 - 44,727,267UniSTSGRCm38
MGSCv371144,540,534 - 44,540,769UniSTSGRCm37
Celera1149,359,508 - 49,359,743UniSTS
Cytogenetic Map11B1.1UniSTS
Whitehead/MRC_RH11606.69UniSTS
RH133481  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,727,066 - 44,727,274UniSTSGRCm38
MGSCv371144,540,568 - 44,540,776UniSTSGRCm37
Celera1149,359,542 - 49,359,750UniSTS
Cytogenetic Map11B1.1UniSTS
AW990631  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381145,004,905 - 45,005,020UniSTSGRCm38
MGSCv371144,818,407 - 44,818,522UniSTSGRCm37
Celera1149,635,783 - 49,635,898UniSTS
Cytogenetic Map11B1.1UniSTS
Whitehead/MRC_RH11608.61UniSTS
01.MMHAP95FRA7.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,934,610 - 44,934,760UniSTSGRCm38
MGSCv371144,748,112 - 44,748,262UniSTSGRCm37
Celera1149,565,620 - 49,565,770UniSTS
Cytogenetic Map11B1.1UniSTS
Whitehead_YAC11 UniSTS
D11Mit130  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,822,544 - 44,822,743UniSTSGRCm38
MGSCv371144,636,046 - 44,636,245UniSTSGRCm37
Celera1149,454,960 - 49,455,159UniSTS
Cytogenetic Map11B1.1UniSTS
cM Map1120.0UniSTS
Whitehead Genetic1119.7UniSTS
Whitehead_YAC11 UniSTS
D11Mit175  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,619,481 - 44,619,592UniSTSGRCm38
MGSCv371144,432,983 - 44,433,094UniSTSGRCm37
Celera1149,254,523 - 49,254,628UniSTS
Cytogenetic Map11B1.1UniSTS
cM Map1120.0UniSTS
Whitehead Genetic1119.7UniSTS
Whitehead_YAC11 UniSTS
D11Mit20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,739,211 - 44,739,324UniSTSGRCm38
MGSCv371144,552,713 - 44,552,826UniSTSGRCm37
Celera1149,371,658 - 49,371,771UniSTS
Cytogenetic Map11B1.1UniSTS
cM Map1120.0UniSTS
Whitehead Genetic1119.7UniSTS
D11Mit20.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,739,059 - 44,739,219UniSTSGRCm38
MGSCv371144,552,561 - 44,552,721UniSTSGRCm37
Celera1149,371,506 - 49,371,666UniSTS
Cytogenetic Map11B1.1UniSTS
cM Map1120.0UniSTS
cM Map11 UniSTS
Whitehead_YAC11 UniSTS
D11Mit206  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,646,325 - 44,646,467UniSTSGRCm38
MGSCv371144,459,827 - 44,459,969UniSTSGRCm37
Celera1149,281,483 - 49,281,637UniSTS
Cytogenetic Map11B1.1UniSTS
cM Map1120.0UniSTS
Whitehead Genetic1119.7UniSTS
Whitehead_YAC11 UniSTS
D11Mit270  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,743,447 - 44,743,571UniSTSGRCm38
MGSCv371144,556,949 - 44,557,073UniSTSGRCm37
Celera1149,375,897 - 49,376,009UniSTS
Cytogenetic Map11B1.1UniSTS
cM Map1120.0UniSTS
Whitehead Genetic1119.7UniSTS
Whitehead_YAC11 UniSTS
D11Dcr8  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,905,350 - 44,905,446UniSTSGRCm38
MGSCv371144,718,852 - 44,718,948UniSTSGRCm37
Celera1149,536,429 - 49,536,511UniSTS
Cytogenetic Map11B1.1UniSTS
cM Map11 UniSTS
BF407519  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,665,388 - 44,665,545UniSTSGRCm38
MGSCv371144,478,890 - 44,479,047UniSTSGRCm37
Celera1149,296,853 - 49,297,010UniSTS
Cytogenetic Map11B1.1UniSTS
PMC134715P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381145,004,781 - 45,004,860UniSTSGRCm38
MGSCv371144,818,283 - 44,818,362UniSTSGRCm37
Celera1149,635,659 - 49,635,738UniSTS
Cytogenetic Map11B1.1UniSTS
D3S3187  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381144,975,639 - 44,976,678UniSTSGRCm38
GRCm38X119,400,361 - 119,401,730UniSTSGRCm38
MGSCv37X116,513,970 - 116,515,339UniSTSGRCm37
MGSCv371144,789,141 - 44,790,180UniSTSGRCm37
Celera1149,606,767 - 49,607,806UniSTS
CeleraX106,018,640 - 106,020,009UniSTS
Cytogenetic Map11B1.1UniSTS
Ebf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B1.1UniSTS
Ebf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B1.1UniSTS
Ebf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B1.1UniSTS
cM Map1120.0UniSTS
Ebf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B1.1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK012964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L12147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000081265   ⟹   ENSMUSP00000080020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,508,144 - 44,898,918 (+)Ensembl
GRCm38.p6 Ensembl1144,617,317 - 45,008,091 (+)Ensembl
Ensembl Acc Id: ENSMUST00000101326   ⟹   ENSMUSP00000099857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,508,144 - 44,896,356 (+)Ensembl
GRCm38.p6 Ensembl1144,617,317 - 45,005,529 (+)Ensembl
Ensembl Acc Id: ENSMUST00000109268   ⟹   ENSMUSP00000104891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,508,144 - 44,895,822 (+)Ensembl
GRCm38.p6 Ensembl1144,617,317 - 45,004,995 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135993
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,509,006 - 44,534,296 (+)Ensembl
GRCm38.p6 Ensembl1144,618,179 - 44,643,469 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,512,588 - 44,534,286 (+)Ensembl
GRCm38.p6 Ensembl1144,621,761 - 44,643,459 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,802,965 - 44,863,741 (+)Ensembl
GRCm38.p6 Ensembl1144,912,138 - 44,972,914 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149997
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1144,508,943 - 44,537,647 (+)Ensembl
GRCm38.p6 Ensembl1144,618,116 - 44,646,820 (+)Ensembl
RefSeq Acc Id: NM_001290709   ⟹   NP_001277638
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,508,927 - 44,898,923 (+)NCBI
GRCm381144,618,100 - 45,008,096 (+)NCBI
Celera1149,253,120 - 49,639,000 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001290710   ⟹   NP_001277639
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,508,927 - 44,898,923 (+)NCBI
GRCm381144,618,100 - 45,008,096 (+)NCBI
Celera1149,253,120 - 49,639,000 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001290711   ⟹   NP_001277640
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,508,927 - 44,898,923 (+)NCBI
GRCm381144,618,100 - 45,008,096 (+)NCBI
Celera1149,253,120 - 49,639,000 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362569   ⟹   NP_001349498
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,511,055 - 44,898,923 (+)NCBI
GRCm381144,620,228 - 45,008,096 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362571   ⟹   NP_001349500
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,508,927 - 44,898,923 (+)NCBI
GRCm381144,618,100 - 45,008,096 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362574   ⟹   NP_001349503
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,508,927 - 44,898,923 (+)NCBI
GRCm381144,618,100 - 45,008,096 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362575   ⟹   NP_001349504
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,508,927 - 44,898,923 (+)NCBI
GRCm381144,618,100 - 45,008,096 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362576   ⟹   NP_001349505
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,508,927 - 44,898,923 (+)NCBI
GRCm381144,618,100 - 45,008,096 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362577   ⟹   NP_001349506
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,508,927 - 44,898,923 (+)NCBI
GRCm381144,618,100 - 45,008,096 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362578   ⟹   NP_001349507
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,508,927 - 44,898,923 (+)NCBI
GRCm381144,618,100 - 45,008,096 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362579   ⟹   NP_001349508
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,508,927 - 44,898,923 (+)NCBI
GRCm381144,618,100 - 45,008,096 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007897   ⟹   NP_031923
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,508,927 - 44,898,923 (+)NCBI
GRCm381144,618,100 - 45,008,096 (+)NCBI
MGSCv371144,431,636 - 44,818,677 (+)RGD
Celera1149,253,120 - 49,639,000 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017314250   ⟹   XP_017169739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,509,198 - 44,897,875 (+)NCBI
GRCm381144,618,361 - 45,008,096 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245520   ⟹   XP_030101380
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,510,912 - 44,898,923 (+)NCBI
GRCm381144,619,395 - 45,008,096 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156287   ⟹   XP_036012180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391144,502,738 - 44,676,919 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001277638 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277639 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277640 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349498 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349500 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349503 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349504 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349505 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349506 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349507 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349508 (Get FASTA)   NCBI Sequence Viewer  
  NP_031923 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169739 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101380 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012180 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37533 (Get FASTA)   NCBI Sequence Viewer  
  AAI39363 (Get FASTA)   NCBI Sequence Viewer  
  AAI39365 (Get FASTA)   NCBI Sequence Viewer  
  BAC27313 (Get FASTA)   NCBI Sequence Viewer  
  BAC29185 (Get FASTA)   NCBI Sequence Viewer  
  BAC31407 (Get FASTA)   NCBI Sequence Viewer  
  BAE23864 (Get FASTA)   NCBI Sequence Viewer  
  BAE24573 (Get FASTA)   NCBI Sequence Viewer  
  BAE43347 (Get FASTA)   NCBI Sequence Viewer  
  EDL33837 (Get FASTA)   NCBI Sequence Viewer  
  EDL33838 (Get FASTA)   NCBI Sequence Viewer  
  EDL33839 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000080020
  ENSMUSP00000080020.6
  ENSMUSP00000099857
  ENSMUSP00000099857.3
  ENSMUSP00000104891
  ENSMUSP00000104891.2
GenBank Protein Q07802 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_031923   ⟸   NM_007897
- Peptide Label: isoform 2
- UniProtKB: Q07802 (UniProtKB/Swiss-Prot),   Q5SWK5 (UniProtKB/TrEMBL),   Q8BSM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277640   ⟸   NM_001290711
- Peptide Label: isoform 4
- UniProtKB: Q5SWK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277638   ⟸   NM_001290709
- Peptide Label: isoform 1
- UniProtKB: Q5SWK4 (UniProtKB/TrEMBL),   Q8BSM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277639   ⟸   NM_001290710
- Peptide Label: isoform 3
- UniProtKB: Q3UTW6 (UniProtKB/TrEMBL),   Q8BSM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169739   ⟸   XM_017314250
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001349504   ⟸   NM_001362575
- Peptide Label: isoform 7
- UniProtKB: Q8CBL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349506   ⟸   NM_001362577
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001349508   ⟸   NM_001362579
- Peptide Label: isoform 10
RefSeq Acc Id: NP_001349505   ⟸   NM_001362576
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001349507   ⟸   NM_001362578
- Peptide Label: isoform 10
RefSeq Acc Id: NP_001349500   ⟸   NM_001362571
- Peptide Label: isoform 5
- UniProtKB: Q5SWK8 (UniProtKB/TrEMBL),   Q8BSM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349503   ⟸   NM_001362574
- Peptide Label: isoform 6
- UniProtKB: Q8BSM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101380   ⟸   XM_030245520
- Peptide Label: isoform X1
- UniProtKB: Q8CBL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349498   ⟸   NM_001362569
- Peptide Label: isoform 8
- UniProtKB: Q8CBL7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000099857   ⟸   ENSMUST00000101326
Ensembl Acc Id: ENSMUSP00000080020   ⟸   ENSMUST00000081265
Ensembl Acc Id: ENSMUSP00000104891   ⟸   ENSMUST00000109268
RefSeq Acc Id: XP_036012180   ⟸   XM_036156287
- Peptide Label: isoform X3
Protein Domains
IPT/TIG

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q07802-F1-model_v2 AlphaFold Q07802 1-591 view protein structure

Promoters
RGD ID:6820788
Promoter ID:MM_KWN:7060
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000101326,   ENSMUST00000106085,   ENSMUST00000109268,   OTTMUST00000012187,   OTTMUST00000012191,   OTTMUST00000012192,   UC007INL.1,   UC007INN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361144,430,526 - 44,431,762 (+)MPROMDB
RGD ID:8674368
Promoter ID:EPDNEW_M15215
Type:multiple initiation site
Name:Ebf1_1
Description:Mus musculus early B cell factor 1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15216  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381144,618,193 - 44,618,253EPDNEW
RGD ID:8674370
Promoter ID:EPDNEW_M15216
Type:initiation region
Name:Ebf1_2
Description:Mus musculus early B cell factor 1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15215  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381144,621,165 - 44,621,225EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95275 AgrOrtholog
Ensembl Genes ENSMUSG00000057098 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000081265 ENTREZGENE
  ENSMUST00000081265.12 UniProtKB/Swiss-Prot
  ENSMUST00000101326 ENTREZGENE
  ENSMUST00000101326.10 UniProtKB/TrEMBL
  ENSMUST00000109268 ENTREZGENE
  ENSMUST00000109268.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.4280 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.3180 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro COE_DBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COE_DBD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COE_HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COE_IPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_E-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IPT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transcription_factor_COE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transcription_factor_COE_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13591 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95275 ENTREZGENE
NCBI Gene 13591 ENTREZGENE
PANTHER PTHR10747 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR COE1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam COE1_DBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COE1_HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ebf1 PhenoGen
PROSITE COE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt COE1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UTW6 ENTREZGENE, UniProtKB/TrEMBL
  Q5SWK4 ENTREZGENE, UniProtKB/TrEMBL
  Q5SWK5 ENTREZGENE, UniProtKB/TrEMBL
  Q5SWK8 ENTREZGENE, UniProtKB/TrEMBL
  Q8BSM3 ENTREZGENE, UniProtKB/TrEMBL
  Q8C955_MOUSE UniProtKB/TrEMBL
  Q8CBL7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-02-07 Ebf1  early B cell factor 1  Ebf1  early B-cell factor 1  Symbol and/or name change 5135510 APPROVED