Dbnl (drebrin-like) - Rat Genome Database

Name: Dbnl
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Dbnl (drebrin-like) Mus musculus

Analyze

Symbol:

Dbnl

Name:

drebrin-like

RGD ID:

732540

MGI Page

MGI

Description:

Enables actin filament binding activity and protein domain specific binding activity. Involved in neuron projection morphogenesis; podosome assembly; and synapse assembly. Acts upstream of or within Rac protein signal transduction. Located in several cellular components, including lamellipodium; podosome; and ruffle. Is expressed in several structures, including central nervous system; genitourinary system; liver; retina; and spleen. Orthologous to human DBNL (drebrin like).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AB; Abp1; actin-binding protein 1; drebrin-like protein; mAb; mAbp1; SH3; SH3 domain-containing protein 7; SH3P7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DBNL (drebrin like)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Dbnl (drebrin-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dbnl (drebrin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DBNL (drebrin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DBNL (drebrin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dbnl (drebrin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DBNL (drebrin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DBNL (drebrin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dbnl (drebrin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Dbnl (drebrin-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DBNL (drebrin like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dbnla (drebrin-like a)	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	dbnlb (drebrin-like b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Abp1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ABP1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	dbn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dbnl	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	5,730,233 - 5,750,980 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	5,738,488 - 5,750,962 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	5,788,483 - 5,800,980 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	5,788,488 - 5,800,962 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	5,688,486 - 5,700,983 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	5,688,533 - 5,700,965 (+)	NCBI		MGSCv36	mm8
Celera	11	6,278,834 - 6,291,141 (+)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	3.87	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Dimauro Disease (ISO)

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

Rhabdomyolysis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methoxyethanol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

acrylamide (ISO)

amitrole (ISO)

ammonium chloride (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

Brodifacoum (ISO)

caffeine (ISO)

carbon nanotube (EXP)

ceric oxide (ISO)

chlorpyrifos (EXP)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

decabromodiphenyl ether (ISO)

dehydroepiandrosterone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

diuron (ISO)

enzyme inhibitor (ISO)

epoxiconazole (EXP)

flutamide (ISO)

folic acid (EXP)

FR900359 (ISO)

hexadecanoic acid (ISO)

hydrogen peroxide (EXP)

ivermectin (ISO)

lead(0) (ISO)

Mesaconitine (ISO)

methimazole (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP)

pentachlorophenol (EXP)

perfluorooctanoic acid (EXP)

pirinixic acid (EXP,ISO)

progesterone (EXP)

SB 431542 (ISO)

sulfadimethoxine (ISO)

thapsigargin (ISO)

titanium dioxide (EXP)

triphenyl phosphate (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament bundle assembly (IDA)

actin filament severing (IDA)

adaptive immune response (IEA)

barbed-end actin filament capping (IDA)

endocytosis (IEA)

immune system process (IEA)

neuron projection morphogenesis (IBA,IMP)

podosome assembly (IMP)

positive regulation of axon extension (IBA)

positive regulation of dendritic spine morphogenesis (IBA)

postsynaptic actin cytoskeleton organization (IBA,ISO)

Rac protein signal transduction (IDA)

regulation of actin filament polymerization (IBA)

synapse assembly (IMP)

Cellular Component

actin filament (IBA)

anchoring junction (IEA)

cell cortex (IDA)

cell projection (IEA)

cortical actin cytoskeleton (IBA)

cytoplasm (IDA,ISO)

cytoplasmic vesicle (IEA)

cytoskeleton (IEA)

dendrite (IBA,ISO)

endosome (IEA)

glutamatergic synapse (ISO)

Golgi apparatus (IEA)

intracellular membrane-bounded organelle (ISO)

lamellipodium (IBA,IDA)

membrane (IEA)

plasma membrane (ISO)

podosome (IDA)

postsynapse (ISO)

postsynaptic density (IBA)

postsynaptic membrane (IBA)

presynapse (ISO)

ruffle (IDA)

site of polarized growth (IBA)

synapse (IEA)

Molecular Function

actin binding (IDA)

actin filament binding (IBA,IDA)

protein binding (IPI,ISO)

protein domain specific binding (IDA)

structural constituent of postsynaptic actin cytoskeleton (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal auditory brainstem response (IEA)

abnormal cardiovascular system physiology (IAGP)

abnormal lung morphology (IAGP)

abnormal motor capabilities/coordination/movement (IAGP)

abnormal optic disk morphology (IEA)

abnormal retina blood vessel morphology (IEA)

abnormal retina inner nuclear layer morphology (IEA)

abnormal retina vasculature morphology (IEA)

abnormal synaptic vesicle recycling (IAGP)

abnormal T cell activation (IAGP)

abnormal T cell physiology (IAGP)

convulsive seizures (IAGP)

decreased body weight (IAGP)

decreased circulating alkaline phosphatase level (IEA)

decreased circulating cholesterol level (IEA)

decreased circulating HDL cholesterol level (IEA)

decreased circulating serum albumin level (IEA)

decreased circulating total protein level (IEA)

decreased circulating triglyceride level (IEA)

decreased erythrocyte cell number (IEA)

decreased hematocrit (IEA)

decreased hemoglobin content (IEA)

decreased IgG1 level (IAGP)

decreased IgM level (IAGP)

decreased immunoglobulin level (IAGP)

decreased interleukin-2 secretion (IAGP)

decreased locomotor activity (IEA)

decreased T cell proliferation (IAGP)

decreased total retina thickness (IEA)

emphysema (IAGP)

generalized edema (IAGP)

hindlimb paralysis (IAGP)

impaired coordination (IAGP)

impaired swimming (IAGP)

increased circulating glucose level (IEA)

increased fluid intake (IEA)

increased grip strength (IEA)

increased heart weight (IEA)

increased mean corpuscular hemoglobin (IEA)

increased mean corpuscular volume (IEA)

increased spleen weight (IAGP)

increased startle reflex (IEA)

limb grasping (IAGP)

paresis (IAGP)

persistence of hyaloid vascular system (IEA)

prenatal lethality, incomplete penetrance (IAGP)

respiratory distress (IAGP)

ruffled hair (IAGP)

tremors (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9126384	PMID:9630982	PMID:9891087	PMID:10087302	PMID:10349636	PMID:10613908	PMID:10637315	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11544199
PMID:12477932	PMID:12520002	PMID:12913069	PMID:14729663	PMID:15489334	PMID:15782199	PMID:15848169	PMID:16055701	PMID:16141072	PMID:16141073	PMID:16601697	PMID:16602821
PMID:16944949	PMID:17956734	PMID:18453588	PMID:18799693	PMID:18829961	PMID:19064729	PMID:19208628	PMID:19638624	PMID:19910490	PMID:21267068	PMID:21565611	PMID:21677750
PMID:21873635	PMID:22303001	PMID:22450813	PMID:22922362	PMID:23223303	PMID:24958882	PMID:28378742	PMID:30196744	PMID:30504273	PMID:32325033	PMID:32554809	PMID:32581705
PMID:34321999	PMID:36417873	PMID:37142655	PMID:38355793

Genomics

Comparative Map Data

Dbnl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	5,730,233 - 5,750,980 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	5,738,488 - 5,750,962 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	5,788,483 - 5,800,980 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	5,788,488 - 5,800,962 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	5,688,486 - 5,700,983 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	5,688,533 - 5,700,965 (+)	NCBI		MGSCv36	mm8
Celera	11	6,278,834 - 6,291,141 (+)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	3.87	NCBI

DBNL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	44,044,702 - 44,069,456 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	44,044,640 - 44,069,456 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	44,084,301 - 44,109,055 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	44,050,830 - 44,067,840 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	44,182,185 - 44,199,260 (+)	NCBI		Celera
Cytogenetic Map	7	p13	NCBI
HuRef	7	43,969,523 - 43,986,598 (+)	NCBI		HuRef
CHM1_1	7	44,088,113 - 44,105,189 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	44,203,197 - 44,227,954 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	44,123,733 - 44,140,805 (+)	NCBI

Dbnl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	84,880,085 - 84,895,122 (+)	NCBI		GRCr8
mRatBN7.2	14	80,666,115 - 80,681,155 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	80,666,124 - 80,681,155 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	85,068,401 - 85,083,685 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	86,308,505 - 86,323,788 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	82,757,826 - 82,773,110 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	86,029,335 - 86,044,364 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	86,029,335 - 86,044,364 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	86,721,144 - 86,736,173 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	86,450,448 - 86,481,863 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	86,469,592 - 86,484,067 (+)	NCBI
Celera	14	79,551,079 - 79,566,108 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

Dbnl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	7,912,827 - 7,924,787 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955456	7,912,827 - 7,924,373 (-)	NCBI	ChiLan1.0	ChiLan1.0

DBNL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	48,950,223 - 48,972,891 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	97,276,140 - 97,297,574 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	44,753,062 - 44,775,717 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	44,824,537 - 44,842,059 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	44,824,608 - 44,845,891 (+)	Ensembl	panpan1.1		panPan2

DBNL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	16	1,996,510 - 2,007,305 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	14,854,694 - 14,865,499 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	14,854,694 - 14,877,271 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0	16	14,485,876 - 14,496,666 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	14,466,360 - 14,477,156 (-)	NCBI		UU_Cfam_GSD_1.0

Dbnl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	99,795,888 - 99,809,337 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	19,007,672 - 19,020,361 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936478	19,007,630 - 19,021,068 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DBNL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	48,713,340 - 48,725,697 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	48,713,335 - 48,725,692 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	53,426,424 - 53,438,753 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DBNL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	14,610,196 - 14,627,363 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	14,608,571 - 14,627,321 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666062	7,886,798 - 7,904,467 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dbnl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	7,950,556 - 7,960,568 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	7,950,552 - 7,960,592 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Dbnl
633 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	684
Count of miRNA genes:	319
Interacting mature miRNAs:	343
Transcripts:	ENSMUST00000020769, ENSMUST00000102928, ENSMUST00000109845
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300599	Cocrb11_m	cocaine related behavior 11 (mouse)			Not determined		11	2670355	36671472	Mouse
26884446	Sklq10_m	skull length QTL 10, 10 week (mouse)					11	3250000	62890826	Mouse
1300661	Lmr6_m	leishmaniasis resistance 6 (mouse)			Not determined		11	1	25976374	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	3950000	88890826	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	3950000	94890826	Mouse
27095925	Pglq5_m	pelvic girdle length QTL 5, 5 week (mouse)					11	3250000	19750000	Mouse
27226741	Metcl5_m	metatarsal-calcaneal length 5, 5 week (mouse)					11	4650000	46290827	Mouse
1357722	Vtbt11_m	vertebral trabecular bone trait 11 (mouse)			Not determined		11	1	23880487	Mouse
27226735	Metcl16_m	metatarsal-calcaneal length 16, 16 week (mouse)					11	5250000	35090827	Mouse
10044008	Hbnr15_m	Heligmosomoides bakeri nematode resistance 15 (mouse)			Not determined		11	227052	34227232	Mouse
27226798	Scvln18_m	sacral vertebrae length 2, 16 week (mouse)					11	3250000	60690826	Mouse
27095919	Pglq10_m	pelvic girdle length QTL 10, 10 week (mouse)					11	3250000	18450000	Mouse
1300768	Tshp9_m	tooth shape 9 (mouse)			Not determined		11	1	25976374	Mouse
10053676	Eae44a_m	experimental allergic encephalomyelitis susceptibility 44a (mouse)			Not determined		11	4507896	21379532	Mouse
1301765	Skull15_m	skull morphology 15 (mouse)			Not determined		11	1	25976374	Mouse
27095914	Pglq16_m	pelvic girdle length QTL 16, 16 week (mouse)					11	3250000	18150000	Mouse
27095909	Scvln6_m	sacral vertebrae length 2, 5 week (mouse)					11	3250000	44090827	Mouse
27095904	Scvln12_m	sacral vertebrae length 2, 10 week (mouse)					11	3250000	34495048	Mouse
26884453	Sklq16_m	skull length QTL 16, 16 week (mouse)					11	3250000	72690826	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001146308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001146309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_013810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036156280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK037484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK046073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK053796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK078082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK134136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK134487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK140752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK142818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK151096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK152110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK152204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK153072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK153389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK159984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK161973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK172471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK177846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK178712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK181313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK186806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK190211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK191372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK196907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK198437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK199055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK199448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK203166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK210402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK215440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK218138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL627069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY098595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC046430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM247511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY293844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U58884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000020769 ⟹ ENSMUSP00000020769

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	5,738,522 - 5,750,288 (+)	Ensembl
GRCm38.p6 Ensembl	11	5,788,522 - 5,800,288 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000102928 ⟹ ENSMUSP00000099992

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	5,738,530 - 5,750,962 (+)	Ensembl
GRCm38.p6 Ensembl	11	5,788,530 - 5,800,962 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000109845 ⟹ ENSMUSP00000105471

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	5,738,488 - 5,750,629 (+)	Ensembl
GRCm38.p6 Ensembl	11	5,788,488 - 5,800,629 (+)	Ensembl

RefSeq Acc Id:

NM_001146308 ⟹ NP_001139780

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	5,738,483 - 5,750,980 (+)	NCBI
GRCm38	11	5,788,483 - 5,800,980 (+)	ENTREZGENE
MGSCv37	11	5,688,486 - 5,700,983 (+)	RGD
Celera	11	6,278,834 - 6,291,141 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

GGGGCGGGGCTTCCGGCCGTCACTGGAGGCCGGCAGAAAGCTGAAGCTGCTGCATCGCGGGGAC
CGTGGGGCGTGCCATGGCGGTGAACCTGAGCCGGAACGGGCCGGCGCTGCAGGAGGCCTACGTG
CGCGTAGTCACCGAGAAATCCCCGACCGACTGGGCTCTTTTTACCTATGAAGGCAACAGCAATG
ACATCCGTGTGGCTGGCACAGGAGAGGGAGGCCTGGAGGAGCTGGTGGAAGAGCTCAACAGCGG
GAAGGTGATGTACGCCTTCTGCAGGGTGAAGGACCCCAACTCCGGCCTGCCCAAGTTTGTCCTC
ATCAACTGGACAGGAGAGGGTGTGAATGATGTGCGGAAAGGAGCATGTGCCAACCACGTCAGCA
CCATGGCCAACTTCCTGAAGGGTGCCCACGTGACCATCAATGCCCGGGCCGAGGAGGATGTGGA
GCCTGAGTGCATCATGGAGAAGGTTGCCAAGGCCTCTGGGGCCAACTACAGCTTCCATAAGGAA
AGCACCTCCTTCCAGGATGTAGGGCCGCAGGCCCCAGTGGGCTCTGTGTACCAGAAGACCAATG
CCATATCTGAGATCAAGAGAGTCGGCAAGGATAACTTCTGGGCCAAAGCTGAGAAGGAAGAAGA
GAACCGCCGCCTGGAGGAGAAGCGGCGTGCCGAAGAGGAGCGGCAGCGGTTGGAGGAGGAGCGA
CGAGAGCGGGAGCTGCAGGAGGCTGCCCGACGTGAGCAGCGCTACCAGGAACAGCACAGATCAG
CTGGAGCCCCGAGCCCTTCCAGCAGGACAGGTGAGCCAGAGCAGGAAGCCGTTTCAAGGACCAG
ACAGGAGTGGGAGTCTGCTGGGCAGCAGGCCCCACACCCACGAGAGATTTTCAAGCAGAAGGAA
AGGGCAATGTCCACCACCTCTGTCACCAGCTCGCAGCCGGGCAAGCTGAGGAGCCCCTTCCTGC
AGAAGCAACTCACTCAACCAGAAACCTCCTACGGCCGAGAGCCCACAGCTCCTGTCTCCCGGCC
TGCAGCAGGTGTCTGTGAGGAGCCAGCGCCTAGCACTCTGTCTTCTGCCCAGACAGAAGAAGAA
CCTACATATGAAGTACCCCCAGAGCAGGACACCCTCTATGAGGAACCACCACTGGTACAGCAGC
AAGGGGCTGGCTCCGAACACATTGACAACTACATGCAGAGCCAGGGCTTCAGTGGACAAGGGCT
GTGCGCCCGGGCCTTGTATGACTACCAGGCAGCTGATGACACCGAGATCTCCTTTGACCCTGAG
AACCTAATCACAGGCATCGAGGTGATTGACGAAGGCTGGTGGCGAGGCTATGGGCCTGACGGCC
ACTTTGGCATGTTTCCTGCCAACTACGTGGAGCTCATAGAGTGAGGCCGAGACCTGGCGTCCTT
CTCCACCACAAGTGGATTCCTTGTCGCCTAAGGAGGAGGCCAAAGAATTAATATTTGGCACTCT
TCCAGGAATGGGACTTGAGTGAGGACAAGACTTCCTCTGCCTTGAGTGCTCCTGTTACCCCAGA
TGTAGCAGTGTCCCACTGCCCCCCGCCCCCCCAAATGCTTACCGCAGCCTCTAGGCCCTCTCCA
GCCTTACACTTGACCCCAGTGGGGATGGCATATTGAGCCAAGGTGAACCAGTGACCAGCTCTGA
TGACCTCTGTCCAGGGACAGCAGCACTGAGACGTTGGACTCAGAGCAGGCATATCTGGGGCCAC
AGTGTACTCTTGCCTTTCTTTCTGGGTGGCTTCTAAGGGTGGTAGCTGCAGCTGTTTAGAAAGG
CCCTTGGGAATTGTGAACTTAAAAGAGAATTGCTTTTAGCAAAATCTTGACCAAAGTCAGACTA
GCCCGTGAGTTTTGAGACAGCAGGGATGTTTTCTCACAGGAGGCTTCTCCACCTTGTTTCTCTC
CGTGTCTGCTGTGGAAGGAGGGATGGGACGACCAAGCTTCCATCTCTGGGAATGTGCACATTCA
AAGACGTCATGTGGTTCATCTATTGCGTGCTATACCCTGGCTCAGCCCATCCATGTCTGATAAA
CGAATCTAAGCAGTGCGGTGAGGCCCACAGCCCATCTGCCCCGCTTGTGACCTGAATGGGGGAG
AAATCCAAGCTTAGGCTCTGTATTTGCATCGTACCTGAGTGTGTACATGTGTGTGTTCACATAT
GTGCCCTCAGACTCTGTTTAGCCTCCTACAGGAAGTATAAGTGAGCAGACATGATGGTGCATGC
CTGCAATCTCAGCATCACAGGGAGGCAGAGGCAGGTGGATCCCTGAGTTCAAGGCCATGAGCCT
AGCCTGGTGTTCACAGTTCCTGGACAGCCGGGGTTAACTGGTGTATAAATGATATAACTGATGT
C

hide sequence

RefSeq Acc Id:

NM_001146309 ⟹ NP_001139781

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	5,738,483 - 5,750,980 (+)	NCBI
GRCm38	11	5,788,483 - 5,800,980 (+)	ENTREZGENE
MGSCv37	11	5,688,486 - 5,700,983 (+)	RGD
Celera	11	6,278,834 - 6,291,141 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

GGGGCGGGGCTTCCGGCCGTCACTGGAGGCCGGCAGAAAGCTGAAGCTGCTGCATCGCGGGGAC
CGTGGGGCGTGCCATGGCGGTGAACCTGAGCCGGAACGGGCCGGCGCTGCAGGAGGCCTACGTG
CGCGTAGTCACCGAGAAATCCCCGACCGACTGGGCTCTTTTTACCTATGAAGGCAACAGCAATG
ACATCCGTGTGGCTGGCACAGGAGAGGGAGGCCTGGAGGAGCTGGTGGAAGAGCTCAACAGCGG
GAAGGTGATGTACGCCTTCTGCAGGGTGAAGGACCCCAACTCCGGCCTGCCCAAGTTTGTCCTC
ATCAACTGGACAGGAGAGGGTGTGAATGATGTGCGGAAAGGAGCATGTGCCAACCACGTCAGCA
CCATGGCCAACTTCCTGAAGGGTGCCCACGTGACCATCAATGCCCGGGCCGAGGAGGATGTGGA
GCCTGAGTGCATCATGGAGAAGGTTGCCAAGGCCTCTGGGGCCAACTACAGCTTCCATAAGGAA
AGCACCTCCTTCCAGGATGTAGGGCCGCAGGCCCCAGTGGGCTCTGTGTACCAGAAGACCAATG
CCATATCTGAGATCAAGAGAGTCGGCAAGGATAACTTCTGGGCCAAAGCTGAGAAGGAAGAAGA
GAACCGCCGCCTGGAGGAGAAGCGGCGTGCCGAAGAGGAGCGGCAGCGGTTGGAGGAGGAGCGA
CGAGAGCGGGAGCTGCAGGAGGCTGCCCGACGTGAGCAGCGCTACCAGGAACAGCACAGATCAG
CTGGAGCCCCGAGGACAGGTGAGCCAGAGCAGGAAGCCGTTTCAAGGACCAGACAGGAGTGGGA
GTCTGCTGGGCAGCAGGCCCCACACCCACGAGAGATTTTCAAGCAGAAGGAAAGGGCAATGTCC
ACCACCTCTGTCACCAGCTCGCAGCCGGGCAAGCTGAGGAGCCCCTTCCTGCAGAAGCAACTCA
CTCAACCAGAAACCTCCTACGGCCGAGAGCCCACAGCTCCTGTCTCCCGGCCTGCAGCAGGTGT
CTGTGAGGAGCCAGCGCCTAGCACTCTGTCTTCTGCCCAGACAGAAGAAGAACCTACATATGAA
GTACCCCCAGAGCAGGACACCCTCTATGAGGAACCACCACTGGTACAGCAGCAAGGGGCTGGCT
CCGAACACATTGACAACTACATGCAGAGCCAGGGCTTCAGTGGACAAGGGCTGTGCGCCCGGGC
CTTGTATGACTACCAGGCAGCTGATGACACCGAGATCTCCTTTGACCCTGAGAACCTAATCACA
GGCATCGAGGTGATTGACGAAGGCTGGTGGCGAGGCTATGGGCCTGACGGCCACTTTGGCATGT
TTCCTGCCAACTACGTGGAGCTCATAGAGTGAGGCCGAGACCTGGCGTCCTTCTCCACCACAAG
TGGATTCCTTGTCGCCTAAGGAGGAGGCCAAAGAATTAATATTTGGCACTCTTCCAGGAATGGG
ACTTGAGTGAGGACAAGACTTCCTCTGCCTTGAGTGCTCCTGTTACCCCAGATGTAGCAGTGTC
CCACTGCCCCCCGCCCCCCCAAATGCTTACCGCAGCCTCTAGGCCCTCTCCAGCCTTACACTTG
ACCCCAGTGGGGATGGCATATTGAGCCAAGGTGAACCAGTGACCAGCTCTGATGACCTCTGTCC
AGGGACAGCAGCACTGAGACGTTGGACTCAGAGCAGGCATATCTGGGGCCACAGTGTACTCTTG
CCTTTCTTTCTGGGTGGCTTCTAAGGGTGGTAGCTGCAGCTGTTTAGAAAGGCCCTTGGGAATT
GTGAACTTAAAAGAGAATTGCTTTTAGCAAAATCTTGACCAAAGTCAGACTAGCCCGTGAGTTT
TGAGACAGCAGGGATGTTTTCTCACAGGAGGCTTCTCCACCTTGTTTCTCTCCGTGTCTGCTGT
GGAAGGAGGGATGGGACGACCAAGCTTCCATCTCTGGGAATGTGCACATTCAAAGACGTCATGT
GGTTCATCTATTGCGTGCTATACCCTGGCTCAGCCCATCCATGTCTGATAAACGAATCTAAGCA
GTGCGGTGAGGCCCACAGCCCATCTGCCCCGCTTGTGACCTGAATGGGGGAGAAATCCAAGCTT
AGGCTCTGTATTTGCATCGTACCTGAGTGTGTACATGTGTGTGTTCACATATGTGCCCTCAGAC
TCTGTTTAGCCTCCTACAGGAAGTATAAGTGAGCAGACATGATGGTGCATGCCTGCAATCTCAG
CATCACAGGGAGGCAGAGGCAGGTGGATCCCTGAGTTCAAGGCCATGAGCCTAGCCTGGTGTTC
ACAGTTCCTGGACAGCCGGGGTTAACTGGTGTATAAATGATATAACTGATGTC

hide sequence

RefSeq Acc Id:

NM_013810 ⟹ NP_038838

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	5,738,483 - 5,750,980 (+)	NCBI
GRCm38	11	5,788,483 - 5,800,980 (+)	ENTREZGENE
MGSCv37	11	5,688,486 - 5,700,983 (+)	RGD
Celera	11	6,278,834 - 6,291,141 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

GGGGCGGGGCTTCCGGCCGTCACTGGAGGCCGGCAGAAAGCTGAAGCTGCTGCATCGCGGGGAC
CGTGGGGCGTGCCATGGCGGTGAACCTGAGCCGGAACGGGCCGGCGCTGCAGGAGGCCTACGTG
CGCGTAGTCACCGAGAAATCCCCGACCGACTGGGCTCTTTTTACCTATGAAGGCAACAGCAATG
ACATCCGTGTGGCTGGCACAGGAGAGGGAGGCCTGGAGGAGCTGGTGGAAGAGCTCAACAGCGG
GAAGGTGATGTACGCCTTCTGCAGGGTGAAGGACCCCAACTCCGGCCTGCCCAAGTTTGTCCTC
ATCAACTGGACAGGAGAGGGTGTGAATGATGTGCGGAAAGGAGCATGTGCCAACCACGTCAGCA
CCATGGCCAACTTCCTGAAGGGTGCCCACGTGACCATCAATGCCCGGGCCGAGGAGGATGTGGA
GCCTGAGTGCATCATGGAGAAGGTTGCCAAGGCCTCTGGGGCCAACTACAGCTTCCATAAGGAA
AGCACCTCCTTCCAGGATGTAGGGCCGCAGGCCCCAGTGGGCTCTGTGTACCAGAAGACCAATG
CCATATCTGAGATCAAGAGAGTCGGCAAGGATAACTTCTGGGCCAAAGCTGAGAAGGAAGAAGA
GAACCGCCGCCTGGAGGAGAAGCGGCGTGCCGAAGAGGAGCGGCAGCGGTTGGAGGAGGAGCGA
CGAGAGCGGGAGCTGCAGGAGGCTGCCCGACGTGAGCAGCGCTACCAGGAACAGCACAGATCAG
CTGGAGCCCCGAGCAGGACAGGTGAGCCAGAGCAGGAAGCCGTTTCAAGGACCAGACAGGAGTG
GGAGTCTGCTGGGCAGCAGGCCCCACACCCACGAGAGATTTTCAAGCAGAAGGAAAGGGCAATG
TCCACCACCTCTGTCACCAGCTCGCAGCCGGGCAAGCTGAGGAGCCCCTTCCTGCAGAAGCAAC
TCACTCAACCAGAAACCTCCTACGGCCGAGAGCCCACAGCTCCTGTCTCCCGGCCTGCAGCAGG
TGTCTGTGAGGAGCCAGCGCCTAGCACTCTGTCTTCTGCCCAGACAGAAGAAGAACCTACATAT
GAAGTACCCCCAGAGCAGGACACCCTCTATGAGGAACCACCACTGGTACAGCAGCAAGGGGCTG
GCTCCGAACACATTGACAACTACATGCAGAGCCAGGGCTTCAGTGGACAAGGGCTGTGCGCCCG
GGCCTTGTATGACTACCAGGCAGCTGATGACACCGAGATCTCCTTTGACCCTGAGAACCTAATC
ACAGGCATCGAGGTGATTGACGAAGGCTGGTGGCGAGGCTATGGGCCTGACGGCCACTTTGGCA
TGTTTCCTGCCAACTACGTGGAGCTCATAGAGTGAGGCCGAGACCTGGCGTCCTTCTCCACCAC
AAGTGGATTCCTTGTCGCCTAAGGAGGAGGCCAAAGAATTAATATTTGGCACTCTTCCAGGAAT
GGGACTTGAGTGAGGACAAGACTTCCTCTGCCTTGAGTGCTCCTGTTACCCCAGATGTAGCAGT
GTCCCACTGCCCCCCGCCCCCCCAAATGCTTACCGCAGCCTCTAGGCCCTCTCCAGCCTTACAC
TTGACCCCAGTGGGGATGGCATATTGAGCCAAGGTGAACCAGTGACCAGCTCTGATGACCTCTG
TCCAGGGACAGCAGCACTGAGACGTTGGACTCAGAGCAGGCATATCTGGGGCCACAGTGTACTC
TTGCCTTTCTTTCTGGGTGGCTTCTAAGGGTGGTAGCTGCAGCTGTTTAGAAAGGCCCTTGGGA
ATTGTGAACTTAAAAGAGAATTGCTTTTAGCAAAATCTTGACCAAAGTCAGACTAGCCCGTGAG
TTTTGAGACAGCAGGGATGTTTTCTCACAGGAGGCTTCTCCACCTTGTTTCTCTCCGTGTCTGC
TGTGGAAGGAGGGATGGGACGACCAAGCTTCCATCTCTGGGAATGTGCACATTCAAAGACGTCA
TGTGGTTCATCTATTGCGTGCTATACCCTGGCTCAGCCCATCCATGTCTGATAAACGAATCTAA
GCAGTGCGGTGAGGCCCACAGCCCATCTGCCCCGCTTGTGACCTGAATGGGGGAGAAATCCAAG
CTTAGGCTCTGTATTTGCATCGTACCTGAGTGTGTACATGTGTGTGTTCACATATGTGCCCTCA
GACTCTGTTTAGCCTCCTACAGGAAGTATAAGTGAGCAGACATGATGGTGCATGCCTGCAATCT
CAGCATCACAGGGAGGCAGAGGCAGGTGGATCCCTGAGTTCAAGGCCATGAGCCTAGCCTGGTG
TTCACAGTTCCTGGACAGCCGGGGTTAACTGGTGTATAAATGATATAACTGATGTC

hide sequence

RefSeq Acc Id:

XM_036156280 ⟹ XP_036012173

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	5,730,233 - 5,750,976 (+)	NCBI

Sequence:

show sequence

CCTAATATCAACAGCAATGGCAGCATTTGCCTGGACATCCTGAGGTCACAGTGGTCCCCAGCAC
TGACTGTGTCTAAAGGGCTTCTCTGCCTAGCCCTCGCCATCCTGGAACTTGCGCTGTACACCGG
GCTAGGCTGGGGTTGAAGGCGTAGCCATCATGTCCGACTATCAGATGAAATTTCCGAGGCGCCT
GCGCGCATACAGCTTGCTCTTAAACAAAATACATTAACTAATGAGAGACGAACCAGCGTGAAGC
TCTAAATCGAGCCCACGCCCTGCAGATGCGGACGAACGAGGACCTACGGGCAGGCCCGCCTCTC
GTGGATCTTCATTCACCAGCACCCCGCCTCAACTTTACCCTCAGCCTAGCTCGCCTTCTCTCCA
CTTCCGCTTCCGGCCTCTTGGGCGCGGCTTCTGCACGTCAGAGGCGAGGCTTCCGGCCTCCGGG
GCGGGGCTTCCGGCCGTCACTGGAGGCCGGCAGAAAGCTGAAGCTGCTGCATCGCGGGGACCGT
GGGGCGTGCCATGGCGGTGAACCTGAGCCGGAACGGGCCGGCGCTGCAGGAGGCCTACGTGCGC
GTAGTCACCGAGAAATCCCCGACCGACTGGGCTCTTTTTACCTATGAAGGCAACAGCAATGACA
TCCGTGTGGCTGGCACAGGAGAGGGAGGCCTGGAGGAGCTGGTGGAAGAGCTCAACAGCGGGAA
GGTGATGTACGCCTTCTGCAGGGTGAAGGACCCCAACTCCGGCCTGCCCAAGTTTGTCCTCATC
AACTGGACAGGAGAGGGTGTGAATGATGTGCGGAAAGGAGCATGTGCCAACCACGTCAGCACCA
TGGCCAACTTCCTGAAGGGTGCCCACGTGACCATCAATGCCCGGGCCGAGGAGGATGTGGAGCC
TGAGTGCATCATGGAGAAGGTTGCCAAGGCCTCTGGGGCCAACTACAGCTTCCATAAGGAAAGC
ACCTCCTTCCAGGATGTAGGGCCGCAGGCCCCAGTGGGCTCTGTGTACCAGAAGACCAATGCCA
TATCTGAGATCAAGAGAGTCGGCAAGGATAACTTCTGGGCCAAAGCTGAGAAGGAAGAAGAGAA
CCGCCGCCTGGAGGAGAAGCGGCGTGCCGAAGAGGAGCGGCAGCGGTTGGAGGAGGAGCGACGA
GAGCGGGAGCTGCAGGAGGCTGCCCGACGTGAGCAGCGCTACCAGGAACAGCACAGATCAGCTG
GAGCCCCGAGCCCTTCCAGCAGGACAGGTGAGCCAGAGCAGGAAGCCGTTTCAAGGACCAGACA
GGAGTGGGAGTCTGCTGGGCAGCAGGCCCCACACCCACGAGAGATTTTCAAGCAGAAGGAAAGG
GCAATGTCCACCACCTCTGTCACCAGCTCGCAGCCGGGCAAGCTGAGGAGCCCCTTCCTGCAGA
AGCAACTCACTCAACCAGAAACCTCCTACGGCCGAGAGCCCACAGCTCCTGTCTCCCGGCCTGC
AGCAGGTGTCTGTGAGGAGCCAGCGCCTAGCACTCTGTCTTCTGCCCAGACAGAAGAAGAACCT
ACATATGAAGTACCCCCAGAGCAGGACACCCTCTATGAGGAACCACCACTGGTACAGCAGCAAG
GGGCTGGCTCCGAACACATTGACAACTACATGCAGAGCCAGGGCTTCAGTGGACAAGGGCTGTG
CGCCCGGGCCTTGTATGACTACCAGGCAGCTGATGACACCGAGATCTCCTTTGACCCTGAGAAC
CTAATCACAGGCATCGAGGTGATTGACGAAGGCTGGTGGCGAGGCTATGGGCCTGACGGCCACT
TTGGCATGTTTCCTGCCAACTACGTGGAGCTCATAGAGTGAGGCCGAGACCTGGCGTCCTTCTC
CACCACAAGTGGATTCCTTGTCGCCTAAGGAGGAGGCCAAAGAATTAATATTTGGCACTCTTCC
AGGAATGGGACTTGAGTGAGGACAAGACTTCCTCTGCCTTGAGTGCTCCTGTTACCCCAGATGT
AGCAGTGTCCCACTGCCCCCCGCCCCCCCAAATGCTTACCGCAGCCTCTAGGCCCTCTCCAGCC
TTACACTTGACCCCAGTGGGGATGGCATATTGAGCCAAGGTGAACCAGTGACCAGCTCTGATGA
CCTCTGTCCAGGGACAGCAGCACTGAGACGTTGGACTCAGAGCAGGCATATCTGGGGCCACAGT
GTACTCTTGCCTTTCTTTCTGGGTGGCTTCTAAGGGTGGTAGCTGCAGCTGTTTAGAAAGGCCC
TTGGGAATTGTGAACTTAAAAGAGAATTGCTTTTAGCAAAATCTTGACCAAAGTCAGACTAGCC
CGTGAGTTTTGAGACAGCAGGGATGTTTTCTCACAGGAGGCTTCTCCACCTTGTTTCTCTCCGT
GTCTGCTGTGGAAGGAGGGATGGGACGACCAAGCTTCCATCTCTGGGAATGTGCACATTCAAAG
ACGTCATGTGGTTCATCTATTGCGTGCTATACCCTGGCTCAGCCCATCCATGTCTGATAAACGA
ATCTAAGCAGTGCGGTGAGGCCCACAGCCCATCTGCCCCGCTTGTGACCTGAATGGGGGAGAAA
TCCAAGCTTAGGCTCTGTATTTGCATCGTACCTGAGTGTGTACATGTGTGTGTTCACATATGTG
CCCTCAGACTCTGTTTAGCCTCCTACAGGAAGTATAAGTGAGCAGACATGATGGTGCATGCCTG
CAATCTCAGCATCACAGGGAGGCAGAGGCAGGTGGATCCCTGAGTTCAAGGCCATGAGCCTAGC
CTGGTGTTCACAGTTCCTGGACAGCCGGGGTTAACTGGTGTATAAATGATATAACTGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001139780	(Get FASTA)	NCBI Sequence Viewer
	NP_001139781	(Get FASTA)	NCBI Sequence Viewer
	NP_038838	(Get FASTA)	NCBI Sequence Viewer
	XP_036012173	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52640	(Get FASTA)	NCBI Sequence Viewer
	AAH46430	(Get FASTA)	NCBI Sequence Viewer
	AAM28340	(Get FASTA)	NCBI Sequence Viewer
	BAC32592	(Get FASTA)	NCBI Sequence Viewer
	BAC35528	(Get FASTA)	NCBI Sequence Viewer
	BAC37118	(Get FASTA)	NCBI Sequence Viewer
	BAE22028	(Get FASTA)	NCBI Sequence Viewer
	BAE22160	(Get FASTA)	NCBI Sequence Viewer
	BAE24466	(Get FASTA)	NCBI Sequence Viewer
	BAE25201	(Get FASTA)	NCBI Sequence Viewer
	BAE27532	(Get FASTA)	NCBI Sequence Viewer
	BAE30108	(Get FASTA)	NCBI Sequence Viewer
	BAE31033	(Get FASTA)	NCBI Sequence Viewer
	BAE31953	(Get FASTA)	NCBI Sequence Viewer
	BAE35535	(Get FASTA)	NCBI Sequence Viewer
	BAE40714	(Get FASTA)	NCBI Sequence Viewer
	BAE43024	(Get FASTA)	NCBI Sequence Viewer
	EDL40554	(Get FASTA)	NCBI Sequence Viewer
	EDL40555	(Get FASTA)	NCBI Sequence Viewer
	EDL40556	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000020769
	ENSMUSP00000020769.8
	ENSMUSP00000099992
	ENSMUSP00000099992.5
	ENSMUSP00000105471
	ENSMUSP00000105471.2
GenBank Protein	Q62418	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_038838 ⟸ NM_013810
- Peptide Label:	isoform 2
- UniProtKB:	Q62418 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAVNLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEELVEELNSGKVMY AFCRVKDPNSGLPKFVLINWTGEGVNDVRKGACANHVSTMANFLKGAHVTINARAEEDVEPECI MEKVAKASGANYSFHKESTSFQDVGPQAPVGSVYQKTNAISEIKRVGKDNFWAKAEKEEENRRL EEKRRAEEERQRLEEERRERELQEAARREQRYQEQHRSAGAPSRTGEPEQEAVSRTRQEWESAG QQAPHPREIFKQKERAMSTTSVTSSQPGKLRSPFLQKQLTQPETSYGREPTAPVSRPAAGVCEE PAPSTLSSAQTEEEPTYEVPPEQDTLYEEPPLVQQQGAGSEHIDNYMQSQGFSGQGLCARALYD YQAADDTEISFDPENLITGIEVIDEGWWRGYGPDGHFGMFPANYVELIE hide sequence

RefSeq Acc Id:	NP_001139780 ⟸ NM_001146308
- Peptide Label:	isoform 1
- UniProtKB:	Q80WP1 (UniProtKB/Swiss-Prot), Q5NCI7 (UniProtKB/Swiss-Prot), Q5NCI6 (UniProtKB/Swiss-Prot), Q5NCI5 (UniProtKB/Swiss-Prot), Q3UZ33 (UniProtKB/Swiss-Prot), Q3U8I5 (UniProtKB/Swiss-Prot), Q3U5X3 (UniProtKB/Swiss-Prot), Q3TG34 (UniProtKB/Swiss-Prot), Q8BH56 (UniProtKB/Swiss-Prot), Q62418 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAVNLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEELVEELNSGKVMY AFCRVKDPNSGLPKFVLINWTGEGVNDVRKGACANHVSTMANFLKGAHVTINARAEEDVEPECI MEKVAKASGANYSFHKESTSFQDVGPQAPVGSVYQKTNAISEIKRVGKDNFWAKAEKEEENRRL EEKRRAEEERQRLEEERRERELQEAARREQRYQEQHRSAGAPSPSSRTGEPEQEAVSRTRQEWE SAGQQAPHPREIFKQKERAMSTTSVTSSQPGKLRSPFLQKQLTQPETSYGREPTAPVSRPAAGV CEEPAPSTLSSAQTEEEPTYEVPPEQDTLYEEPPLVQQQGAGSEHIDNYMQSQGFSGQGLCARA LYDYQAADDTEISFDPENLITGIEVIDEGWWRGYGPDGHFGMFPANYVELIE hide sequence

RefSeq Acc Id:	NP_001139781 ⟸ NM_001146309
- Peptide Label:	isoform 3
- UniProtKB:	Q62418 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAVNLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEELVEELNSGKVMY AFCRVKDPNSGLPKFVLINWTGEGVNDVRKGACANHVSTMANFLKGAHVTINARAEEDVEPECI MEKVAKASGANYSFHKESTSFQDVGPQAPVGSVYQKTNAISEIKRVGKDNFWAKAEKEEENRRL EEKRRAEEERQRLEEERRERELQEAARREQRYQEQHRSAGAPRTGEPEQEAVSRTRQEWESAGQ QAPHPREIFKQKERAMSTTSVTSSQPGKLRSPFLQKQLTQPETSYGREPTAPVSRPAAGVCEEP APSTLSSAQTEEEPTYEVPPEQDTLYEEPPLVQQQGAGSEHIDNYMQSQGFSGQGLCARALYDY QAADDTEISFDPENLITGIEVIDEGWWRGYGPDGHFGMFPANYVELIE hide sequence

Ensembl Acc Id:

ENSMUSP00000020769 ⟸ ENSMUST00000020769

Ensembl Acc Id:

ENSMUSP00000105471 ⟸ ENSMUST00000109845

Ensembl Acc Id:

ENSMUSP00000099992 ⟸ ENSMUST00000102928

RefSeq Acc Id:	XP_036012173 ⟸ XM_036156280
- Peptide Label:	isoform X1
- UniProtKB:	Q80WP1 (UniProtKB/Swiss-Prot), Q62418 (UniProtKB/Swiss-Prot), Q5NCI7 (UniProtKB/Swiss-Prot), Q5NCI6 (UniProtKB/Swiss-Prot), Q5NCI5 (UniProtKB/Swiss-Prot), Q3UZ33 (UniProtKB/Swiss-Prot), Q3U8I5 (UniProtKB/Swiss-Prot), Q3U5X3 (UniProtKB/Swiss-Prot), Q3TG34 (UniProtKB/Swiss-Prot), Q8BH56 (UniProtKB/Swiss-Prot)

Protein Domains

ADF-H SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62418-F1-model_v2	AlphaFold	Q62418	1-436	view protein structure

Promoters

RGD ID:

6820699

Promoter ID:

MM_KWN:6314

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_001146308, NM_001146309, NM_013810

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	5,688,184 - 5,688,684 (+)	MPROMDB

RGD ID:

6846826

Promoter ID:

MM_ACW:6643

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_2Hour, BoneMarrow_4Hour, Brain

Transcripts:

DBNL.FSEP07, DBNL.ISEP07

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	5,696,811 - 5,697,311 (+)	MPROMDB

RGD ID:

8673860

Promoter ID:

EPDNEW_M14960

Type:

initiation region

Name:

Dbnl_1

Description:

Mus musculus drebrin-like , transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	5,788,517 - 5,788,577	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:700006	AgrOrtholog
Ensembl Genes	ENSMUSG00000020476	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000020769	ENTREZGENE
	ENSMUST00000020769.14	UniProtKB/Swiss-Prot
	ENSMUST00000102928	ENTREZGENE
	ENSMUST00000102928.5	UniProtKB/Swiss-Prot
	ENSMUST00000109845	ENTREZGENE
	ENSMUST00000109845.8	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.20.10	UniProtKB/Swiss-Prot
	SH3 Domains	UniProtKB/Swiss-Prot
InterPro	ADF-H	UniProtKB/Swiss-Prot
	ADF-H/Gelsolin-like_dom_sf	UniProtKB/Swiss-Prot
	Drebrin-like_SH3	UniProtKB/Swiss-Prot
	SH3-like_dom_sf	UniProtKB/Swiss-Prot
	SH3_domain	UniProtKB/Swiss-Prot
KEGG Report	mmu:13169	UniProtKB/Swiss-Prot
MGD	MGI:700006	ENTREZGENE
NCBI Gene	13169	ENTREZGENE
PANTHER	CORTACTIN AND DREBRIN	UniProtKB/Swiss-Prot
	PTHR10829:SF12	UniProtKB/Swiss-Prot
Pfam	Cofilin_ADF	UniProtKB/Swiss-Prot
	SH3_9	UniProtKB/Swiss-Prot
PhenoGen	Dbnl	PhenoGen
PROSITE	ADF_H	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
SMART	ADF	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
Superfamily-SCOP	Actin depolymerizing proteins	UniProtKB/Swiss-Prot
	SSF50044	UniProtKB/Swiss-Prot
UniProt	DBNL_MOUSE	UniProtKB/Swiss-Prot
	Q3TG34	ENTREZGENE
	Q3U5X3	ENTREZGENE
	Q3U8I5	ENTREZGENE
	Q3UZ33	ENTREZGENE
	Q5NCI5	ENTREZGENE
	Q5NCI6	ENTREZGENE
	Q5NCI7	ENTREZGENE
	Q62418	ENTREZGENE
	Q80WP1	ENTREZGENE
	Q8BH56	ENTREZGENE
UniProt Secondary	Q3TG34	UniProtKB/Swiss-Prot
	Q3U5X3	UniProtKB/Swiss-Prot
	Q3U8I5	UniProtKB/Swiss-Prot
	Q3UZ33	UniProtKB/Swiss-Prot
	Q5NCI5	UniProtKB/Swiss-Prot
	Q5NCI6	UniProtKB/Swiss-Prot
	Q5NCI7	UniProtKB/Swiss-Prot
	Q80WP1	UniProtKB/Swiss-Prot
	Q8BH56	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype