Lfng (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Lfng (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Mus musculus
Analyze
Symbol: Lfng
Name: LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
RGD ID: 732418
MGI Page MGI
Description: Enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity. Involved in lymphocyte differentiation; negative regulation of Notch signaling pathway involved in somitogenesis; and somitogenesis. Acts upstream of or within several processes, including compartment pattern specification; positive regulation of Notch signaling pathway; and regulation of somitogenesis. Predicted to be located in Golgi membrane. Is expressed in several structures, including alimentary system; embryo ectoderm; embryo mesenchyme; genitourinary system; and inner ear. Human ortholog(s) of this gene implicated in spondylocostal dysostosis 3. Orthologous to human LFNG (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW061165; beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; lunatic fringe; O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395140,593,096 - 140,601,300 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5140,593,075 - 140,601,300 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385140,607,341 - 140,615,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5140,607,320 - 140,615,545 (+)Ensemblmm10GRCm38
MGSCv375141,083,295 - 141,091,499 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365140,859,841 - 140,866,960 (+)NCBIMGSCv36mm8
Celera5137,667,846 - 137,675,959 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map579.15NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (EXP,ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
butylated hydroxyanisole  (EXP)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP,ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dinophysistoxin 1  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
ethanol  (EXP)
fluoranthene  (EXP)
folic acid  (EXP)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (ISO)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
iron dichloride  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (EXP)
methapyrilene  (ISO)
methoxyacetic acid  (EXP)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
p-chloromercuribenzoic acid  (ISO)
pentanal  (ISO)
phenylmercury acetate  (ISO)
potassium chloride  (ISO)
progesterone  (ISO)
propanal  (ISO)
propionic acid  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (EXP,ISO)
sulforaphane  (ISO)
sulindac  (ISO)
testosterone  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Golgi apparatus  (IEA)
Golgi membrane  (IEA,TAS)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal axial skeleton morphology  (IAGP)
abnormal cervical vertebrae morphology  (IAGP)
abnormal cochlear outer hair cell morphology  (IAGP)
abnormal costovertebral joint morphology  (IAGP)
abnormal dorsal-ventral polarity of the somites  (IAGP)
abnormal embryo development  (IAGP)
abnormal embryonic hematopoiesis  (IAGP)
abnormal female meiosis  (IAGP)
abnormal female reproductive system morphology  (IAGP)
abnormal gametogenesis  (IAGP)
abnormal lumbar vertebrae morphology  (IAGP)
abnormal lung development  (IAGP)
abnormal lung vasculature morphology  (IAGP)
abnormal multifidus muscle morphology  (IAGP)
abnormal oocyte morphology  (IAGP)
abnormal ovarian follicle morphology  (IAGP)
abnormal ovarian folliculogenesis  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal retina vasculature morphology  (IAGP)
abnormal rib development  (IAGP)
abnormal rib morphology  (IAGP)
abnormal rostral-caudal axis patterning  (IAGP)
abnormal rostral-caudal patterning of the somites  (IAGP)
abnormal sacral vertebrae morphology  (IAGP)
abnormal sclerotome morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal somite development  (IAGP)
abnormal somite size  (IAGP)
abnormal sternocostal joint morphology  (IAGP)
abnormal thoracic cage morphology  (IAGP)
abnormal thoracic vertebrae morphology  (IAGP)
abnormal vertebrae development  (IAGP)
abnormal vertebrae morphology  (IAGP)
abnormal vertebral body development  (IAGP)
abnormal vertebral column morphology  (IAGP)
absent caudal vertebrae  (IAGP)
absent vertebral pedicles  (IAGP)
caudal body truncation  (IAGP)
decreased body length  (IAGP)
decreased caudal vertebrae number  (IAGP)
decreased cervical vertebrae number  (IAGP)
decreased cochlear inner hair cell number  (IAGP)
decreased lumbar vertebrae number  (IAGP)
decreased rib number  (IAGP)
decreased survivor rate  (IAGP)
embryonic lethality, incomplete penetrance  (IAGP)
female infertility  (IAGP)
fused dorsal root ganglion  (IAGP)
impaired lung alveolus development  (IAGP)
impaired ovarian folliculogenesis  (IAGP)
increased cochlear outer hair cell number  (IAGP)
increased rib number  (IAGP)
increased thoracic vertebrae number  (IAGP)
kinked tail  (IAGP)
male infertility  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
reduced fertility  (IEA)
rib bifurcation  (IAGP)
rib fusion  (IAGP)
short tail  (IAGP)
short vertebral column  (IAGP)
small ovary  (IAGP)
vertebral fusion  (IAGP)
vertebral transformation  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Cell and molecular biology of Notch. Fiuza UM and Arias AM, J Endocrinol. 2007 Sep;194(3):459-74.
2. A family of mammalian Fringe genes implicated in boundary determination and the Notch pathway. Johnston SH, etal., Development 1997 Jun;124(11):2245-54.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Lunatic fringe, FGF, and BMP regulate the Notch pathway during epithelial morphogenesis of teeth. Mustonen T, etal., Dev Biol 2002 Aug 15;248(2):281-93.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9207795   PMID:9547240   PMID:9662403   PMID:9690472   PMID:9690473   PMID:9740806   PMID:9804358   PMID:10021340   PMID:10196361   PMID:10225993   PMID:10330372  
PMID:10341080   PMID:10349636   PMID:10508694   PMID:10642790   PMID:10675782   PMID:10704388   PMID:10704873   PMID:10837254   PMID:10878608   PMID:10906448   PMID:11002339   PMID:11042159  
PMID:11044610   PMID:11076861   PMID:11124811   PMID:11133162   PMID:11134352   PMID:11262239   PMID:11511348   PMID:11520458   PMID:11562355   PMID:11641270   PMID:11747084   PMID:11923214  
PMID:11973278   PMID:12001066   PMID:12110168   PMID:12110169   PMID:12142028   PMID:12194867   PMID:12231626   PMID:12392169   PMID:12421720   PMID:12441287   PMID:12466851   PMID:12477932  
PMID:12591245   PMID:12617809   PMID:12620991   PMID:12636920   PMID:12670869   PMID:12676797   PMID:12697902   PMID:12730123   PMID:12783854   PMID:12913075   PMID:12925591   PMID:12971992  
PMID:14623822   PMID:14695375   PMID:14745966   PMID:14960276   PMID:14960495   PMID:15044845   PMID:15084464   PMID:15170214   PMID:15170697   PMID:15242798   PMID:15342729   PMID:15465493  
PMID:15469977   PMID:15511637   PMID:15545629   PMID:15574878   PMID:15591414   PMID:15652707   PMID:15659488   PMID:15731404   PMID:15822856   PMID:15829521   PMID:15846349   PMID:15902259  
PMID:16000382   PMID:16061358   PMID:16127714   PMID:16141072   PMID:16141073   PMID:16221665   PMID:16291790   PMID:16324690   PMID:16325169   PMID:16342160   PMID:16385447   PMID:16412699  
PMID:16436621   PMID:16452098   PMID:16516838   PMID:16524929   PMID:16602821   PMID:16699526   PMID:16728479   PMID:16806848   PMID:16914494   PMID:17013874   PMID:17095659   PMID:17141158  
PMID:17142733   PMID:17244351   PMID:17306789   PMID:17360776   PMID:17362910   PMID:17535249   PMID:17537796   PMID:17572911   PMID:17600782   PMID:17605079   PMID:17664336   PMID:17681139  
PMID:17855431   PMID:17937396   PMID:18045842   PMID:18157121   PMID:18234727   PMID:18257070   PMID:18287559   PMID:18429041   PMID:18550712   PMID:18563087   PMID:18579680   PMID:18579736  
PMID:18678597   PMID:18694942   PMID:18703040   PMID:18708576   PMID:18801836   PMID:19026002   PMID:19028689   PMID:19154719   PMID:19161597   PMID:19217325   PMID:19223466   PMID:19268448  
PMID:19440349   PMID:19476657   PMID:19479951   PMID:19524514   PMID:19540218   PMID:19590010   PMID:19701191   PMID:19779553   PMID:19782673   PMID:19882724   PMID:19897741   PMID:19913004  
PMID:19956724   PMID:20063299   PMID:20081190   PMID:20152827   PMID:20335362   PMID:20346937   PMID:20510365   PMID:20630950   PMID:20733081   PMID:20736290   PMID:20844195   PMID:20969845  
PMID:21068310   PMID:21097675   PMID:21173260   PMID:21203428   PMID:21256124   PMID:21300886   PMID:21302255   PMID:21368122   PMID:21402782   PMID:21420948   PMID:21562282   PMID:21632822  
PMID:21652651   PMID:21677750   PMID:21750544   PMID:21795391   PMID:21799763   PMID:21873635   PMID:21998026   PMID:22069191   PMID:22081605   PMID:22095884   PMID:22182523   PMID:22326607  
PMID:22484060   PMID:22554696   PMID:22624713   PMID:22629441   PMID:22808246   PMID:22954964   PMID:23041177   PMID:23072809   PMID:23362348   PMID:23477786   PMID:23666531   PMID:23671110  
PMID:23806616   PMID:23918393   PMID:24151332   PMID:24165510   PMID:24367028   PMID:24391519   PMID:24552588   PMID:24560643   PMID:24927569   PMID:25057208   PMID:25152336   PMID:25178196  
PMID:25248974   PMID:25624266   PMID:25652402   PMID:25715395   PMID:25808869   PMID:25813538   PMID:25856312   PMID:26279302   PMID:26305214   PMID:26407640   PMID:26410627   PMID:26496195  
PMID:26608918   PMID:26641715   PMID:26718008   PMID:26728556   PMID:26786414   PMID:26811377   PMID:27894818   PMID:27966429   PMID:28089369   PMID:28266911   PMID:28687930   PMID:28699891  
PMID:28710810   PMID:28893950   PMID:29139542   PMID:29193607   PMID:29474908   PMID:29629872   PMID:29712641   PMID:29769265   PMID:30008200   PMID:30061166   PMID:30188892   PMID:30661984  
PMID:30929920   PMID:31590629   PMID:31988190   PMID:32047912   PMID:32147304   PMID:32597756   PMID:33210601   PMID:33298461   PMID:33795231   PMID:34124068   PMID:34475389   PMID:34872929  
PMID:35429490   PMID:35451126   PMID:35686648   PMID:35815610   PMID:37188818   PMID:37369584   PMID:37494420   PMID:38669183   PMID:38834239   PMID:38924591   PMID:39315665   PMID:39407201  


Genomics

Comparative Map Data
Lfng
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395140,593,096 - 140,601,300 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5140,593,075 - 140,601,300 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385140,607,341 - 140,615,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5140,607,320 - 140,615,545 (+)Ensemblmm10GRCm38
MGSCv375141,083,295 - 141,091,499 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365140,859,841 - 140,866,960 (+)NCBIMGSCv36mm8
Celera5137,667,846 - 137,675,959 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map579.15NCBI
LFNG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3872,512,529 - 2,529,177 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl72,512,529 - 2,529,177 (+)Ensemblhg38GRCh38
GRCh3772,552,163 - 2,568,811 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3672,526,005 - 2,535,337 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3472,330,737 - 2,341,302NCBI
Celera72,521,470 - 2,538,114 (+)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef72,469,979 - 2,486,577 (+)NCBIHuRef
CHM1_172,551,728 - 2,568,392 (+)NCBICHM1_1
T2T-CHM13v2.072,625,971 - 2,642,596 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v272,600,032 - 2,616,654 (+)NCBI
Lfng
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81219,144,474 - 19,152,951 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1219,124,662 - 19,152,918 (-)EnsemblGRCr8
mRatBN7.21214,030,551 - 14,038,996 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1214,018,333 - 14,039,008 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1214,839,113 - 14,847,134 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,462,384 - 15,470,633 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,489,324 - 14,497,345 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,117,767 - 16,126,211 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,118,634 - 16,126,953 (-)Ensemblrn6Rnor6.0
Rnor_5.01218,113,805 - 18,123,172 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41214,497,704 - 14,505,723 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1215,790,243 - 15,798,262 (-)NCBICelera
RGSC_v3.11214,527,632 - 14,535,651 (-)NCBI
Cytogenetic Map12q11NCBI
Lfng
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546012,773,975 - 12,784,512 (-)Ensembl
ChiLan1.0NW_00495546012,773,975 - 12,784,512 (-)NCBIChiLan1.0ChiLan1.0
LFNG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v267,477,996 - 7,487,441 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1755,802,701 - 55,812,142 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v072,781,493 - 2,790,936 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.172,876,721 - 2,884,926 (+)NCBIPanPan1.1PanPan1.1panPan2
LFNG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1614,631,638 - 14,640,147 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl614,632,691 - 14,635,485 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha616,094,444 - 16,103,246 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0614,757,824 - 14,766,634 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl614,757,836 - 14,766,900 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1614,561,780 - 14,570,581 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0614,490,186 - 14,498,963 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0614,776,050 - 14,784,860 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lfng
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344142,760,468 - 142,768,231 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936823283,205 - 290,986 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936823283,207 - 290,970 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LFNG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl31,810,892 - 1,820,048 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.131,721,044 - 1,819,426 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.232,208,304 - 2,267,857 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LFNG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12819,084,527 - 19,092,305 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660902,679,194 - 2,686,982 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lfng
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,392,079 - 30,404,068 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474030,392,342 - 30,404,003 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

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Variants in Lfng
384 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:493
Count of miRNA genes:342
Interacting mature miRNAs:395
Transcripts:ENSMUST00000031555
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
13464143Bbaa2b_mB.burgdorferi-associated arthritis 2b (mouse)5133052969140709801Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
13504737Ifvrq5_minfluenza virus resistance QTL 5 (mouse)5139509801151658149Mouse
13504734Ifvrq4_minfluenza virus resistance QTL 4 (mouse)5139985755151658149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
13504735Ifvrq7_minfluenza virus resistance QTL 7 (mouse)5139509801151658149Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse

Markers in Region
AW061165  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385140,615,387 - 140,615,515UniSTSGRCm38
MGSCv375141,091,341 - 141,091,469UniSTSGRCm37
Celera5137,675,801 - 137,675,929UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
Whitehead/MRC_RH51686.49UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000031555   ⟹   ENSMUSP00000031555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5140,593,075 - 140,601,300 (+)Ensembl
GRCm38.p6 Ensembl5140,607,320 - 140,615,545 (+)Ensembl
Ensembl Acc Id: ENSMUST00000199848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5140,597,440 - 140,600,429 (+)Ensembl
GRCm38.p6 Ensembl5140,611,685 - 140,614,674 (+)Ensembl
Ensembl Acc Id: ENSMUST00000200626
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5140,597,264 - 140,599,087 (+)Ensembl
GRCm38.p6 Ensembl5140,611,509 - 140,613,332 (+)Ensembl
RefSeq Acc Id: NM_008494   ⟹   NP_032520
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395140,593,096 - 140,601,300 (+)NCBI
GRCm385140,607,341 - 140,615,545 (+)ENTREZGENE
MGSCv375141,083,295 - 141,091,499 (+)RGD
Celera5137,667,846 - 137,675,959 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032520   ⟸   NM_008494
- UniProtKB: Q8K3F1 (UniProtKB/Swiss-Prot),   Q3U659 (UniProtKB/Swiss-Prot),   Q9DC10 (UniProtKB/Swiss-Prot),   O09010 (UniProtKB/Swiss-Prot),   B2RRW2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000031555   ⟸   ENSMUST00000031555
Protein Domains
Fringe-like glycosyltransferase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O09010-F1-model_v2 AlphaFold O09010 1-378 view protein structure

Promoters
RGD ID:6888604
Promoter ID:EPDNEW_M7753
Type:multiple initiation site
Name:Lfng_1
Description:Mus musculus LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385140,607,343 - 140,607,403EPDNEW
RGD ID:6837790
Promoter ID:MM_KWN:44659
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_008494
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365141,083,029 - 141,083,529 (+)MPROMDB
RGD ID:6837792
Promoter ID:MM_KWN:44660
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC009AHV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365141,086,694 - 141,087,194 (+)MPROMDB
RGD ID:6848824
Promoter ID:MM_TRO:7893
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Spleen
Transcripts:MTR005137.5.2776.3
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365141,088,204 - 141,088,704 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1095413 AgrOrtholog
Ensembl Genes ENSMUSG00000029570 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000031555 ENTREZGENE
  ENSMUST00000031555.3 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.550.50 UniProtKB/Swiss-Prot
InterPro Fringe UniProtKB/Swiss-Prot
  Fringe-like UniProtKB/Swiss-Prot
KEGG Report mmu:16848 UniProtKB/Swiss-Prot
MGD MGI:1095413 ENTREZGENE
NCBI Gene 16848 ENTREZGENE
PANTHER FRINGE-RELATED UniProtKB/Swiss-Prot
Pfam Fringe UniProtKB/Swiss-Prot
PhenoGen Lfng PhenoGen
PIRSF B-acetylgalactosaminyltfrase UniProtKB/Swiss-Prot
UniProt B2RRW2 ENTREZGENE, UniProtKB/TrEMBL
  LFNG_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q08EF2_MOUSE UniProtKB/TrEMBL
  Q3U659 ENTREZGENE
  Q8K3F1 ENTREZGENE
  Q9DC10 ENTREZGENE
UniProt Secondary Q3U659 UniProtKB/Swiss-Prot
  Q8K3F1 UniProtKB/Swiss-Prot
  Q9DC10 UniProtKB/Swiss-Prot