Fgf3 (fibroblast growth factor 3) - Rat Genome Database

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Gene: Fgf3 (fibroblast growth factor 3) Mus musculus
Analyze
Symbol: Fgf3
Name: fibroblast growth factor 3
RGD ID: 732330
MGI Page MGI
Description: Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Acts upstream of or within several processes, including inner ear morphogenesis; post-anal tail morphogenesis; and thymus development. Located in Golgi apparatus. Is expressed in several structures, including brain; branchial arch; egg cylinder; jaw; and sensory organ. Orthologous to human FGF3 (fibroblast growth factor 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fgf-3; Fgf5c; fibroblast growth factor 5c; HBGF-3; heparin-binding growth factor 3; In; Int; Int-2; INT-2 proto-oncogene protein; Int-P; proto-oncogene Int-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397144,392,349 - 144,397,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7144,391,820 - 144,398,173 (+)EnsemblGRCm39 Ensembl
GRCm387144,838,612 - 144,843,348 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7144,838,083 - 144,844,436 (+)EnsemblGRCm38mm10GRCm38
MGSCv377152,024,517 - 152,029,253 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367144,648,098 - 144,652,378 (+)NCBIMGSCv36mm8
Celera7144,602,541 - 144,607,277 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal caudal vertebrae morphology  (IAGP)
abnormal cochlea morphology  (IAGP)
abnormal cranial ganglia morphology  (IAGP)
abnormal ear development  (IAGP)
abnormal ear morphology  (IAGP)
abnormal embryo development  (IAGP)
abnormal embryo size  (IEA)
abnormal inner ear morphology  (IAGP)
abnormal inner ear vestibule morphology  (IAGP)
abnormal membranous labyrinth morphology  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal otic vesicle development  (IAGP)
abnormal presomitic mesoderm morphology  (IAGP)
abnormal scala media morphology  (IAGP)
abnormal scala vestibuli morphology  (IAGP)
abnormal semicircular canal morphology  (IAGP)
abnormal somite development  (IAGP)
abnormal tail morphology  (IAGP)
abnormal utricle morphology  (IAGP)
abnormal vestibular saccule morphology  (IAGP)
abnormal vestibulocochlear ganglion morphology  (IAGP)
absent common crus  (IAGP)
absent endolymphatic duct  (IAGP)
absent endolymphatic sac  (IAGP)
absent inner ear  (IAGP)
absent limbs  (IAGP)
absent otic vesicle  (IAGP)
absent pinna reflex  (IAGP)
absent posterior semicircular canal  (IAGP)
absent superior semicircular canal  (IAGP)
absent vestibulocochlear ganglion  (IAGP)
caudal vertebral fusion  (IAGP)
circling  (IAGP)
cochlear ganglion hypoplasia  (IAGP)
curly tail  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IEA)
decreased caudal vertebrae number  (IAGP)
decreased cochlea coiling  (IAGP)
decreased embryo size  (IAGP)
decreased startle reflex  (IAGP)
dilated cochlea  (IAGP)
dilated scala media  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
enlarged lymph nodes  (IEA)
head tilt  (IAGP)
hyperactivity  (IAGP)
impaired righting response  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
kinked tail  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
no spontaneous movement  (IEA)
postnatal lethality  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
short endolymphatic duct  (IAGP)
short rostral-caudal axis  (IAGP)
short tail  (IAGP)
small otic vesicle  (IAGP)
thick tail  (IAGP)
unresponsive to tactile stimuli  (IEA)
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Tissue remodeling in the acute otitis media mouse model. Sautter NB, etal., Int J Pediatr Otorhinolaryngol. 2011 Nov;75(11):1368-71. doi: 10.1016/j.ijporl.2011.07.026. Epub 2011 Sep 1.
Additional References at PubMed
PMID:1317463   PMID:1335281   PMID:1349842   PMID:1376141   PMID:1460423   PMID:1480129   PMID:1530875   PMID:1535334   PMID:1543906   PMID:1543912   PMID:1572647   PMID:1618140  
PMID:1638089   PMID:1679745   PMID:1679753   PMID:1680807   PMID:1686571   PMID:1690126   PMID:1709450   PMID:1794058   PMID:1794310   PMID:1964688   PMID:2120706   PMID:2157060  
PMID:2185890   PMID:2264930   PMID:2377456   PMID:2406607   PMID:2429320   PMID:2536846   PMID:2548184   PMID:2680421   PMID:2740210   PMID:2841106   PMID:2878090   PMID:3013624  
PMID:3060118   PMID:3146546   PMID:3194019   PMID:3293998   PMID:3416832   PMID:3468297   PMID:3574458   PMID:6321961   PMID:6325949   PMID:6327073   PMID:7487932   PMID:7513297  
PMID:7571419   PMID:7591288   PMID:7635047   PMID:7684245   PMID:7789270   PMID:7873885   PMID:7892260   PMID:7925026   PMID:7999362   PMID:8001822   PMID:8095010   PMID:8096811  
PMID:8100767   PMID:8104708   PMID:8186145   PMID:8223243   PMID:8224839   PMID:8287791   PMID:8380647   PMID:8386870   PMID:8390964   PMID:8393839   PMID:8479737   PMID:8499656  
PMID:8507976   PMID:8535974   PMID:8585128   PMID:8631508   PMID:8747923   PMID:8800419   PMID:8838320   PMID:8854873   PMID:8883961   PMID:8889548   PMID:8901049   PMID:8903730  
PMID:9286715   PMID:9375020   PMID:9385055   PMID:9566308   PMID:9598344   PMID:9626498   PMID:9640329   PMID:9753686   PMID:10192400   PMID:10349636   PMID:10354604   PMID:10421635  
PMID:10471511   PMID:10498685   PMID:10642790   PMID:10642791   PMID:10769235   PMID:10934262   PMID:11042159   PMID:11066089   PMID:11076861   PMID:11091071   PMID:11165488   PMID:11217851  
PMID:11331772   PMID:11335076   PMID:11412024   PMID:11489975   PMID:11504872   PMID:11528388   PMID:11532923   PMID:11566864   PMID:11731698   PMID:11782400   PMID:11812828   PMID:11880356  
PMID:11880361   PMID:11896623   PMID:11900978   PMID:12070080   PMID:12084721   PMID:12169667   PMID:12231626   PMID:12421715   PMID:12431380   PMID:12466851   PMID:12477932   PMID:12489159  
PMID:12502739   PMID:12514106   PMID:12666204   PMID:12748966   PMID:12810586   PMID:12874121   PMID:14623822   PMID:14681479   PMID:14695375   PMID:14751559   PMID:15071597   PMID:15082719  
PMID:15084464   PMID:15108308   PMID:15108315   PMID:15136142   PMID:15226823   PMID:15741321   PMID:15829521   PMID:15830353   PMID:15963767   PMID:16123981   PMID:16141072   PMID:16141073  
PMID:16172976   PMID:16263090   PMID:16452092   PMID:16452098   PMID:16806848   PMID:16818445   PMID:16890158   PMID:16900517   PMID:16916509   PMID:17000704   PMID:17121988   PMID:17196193  
PMID:17601531   PMID:17728342   PMID:17855431   PMID:17951031   PMID:17959802   PMID:17965051   PMID:18077585   PMID:18270576   PMID:18287559   PMID:18377888   PMID:18412219   PMID:18495817  
PMID:18703040   PMID:18835578   PMID:18942154   PMID:19027001   PMID:19476657   PMID:19540218   PMID:19544582   PMID:19619645   PMID:19631205   PMID:19906864   PMID:20018768   PMID:20040496  
PMID:20123092   PMID:20171206   PMID:20348033   PMID:20713518   PMID:20883684   PMID:20883686   PMID:21070765   PMID:21177346   PMID:21362415   PMID:21368122   PMID:21402782   PMID:21664901  
PMID:21731673   PMID:21858141   PMID:21873635   PMID:21876757   PMID:22182523   PMID:22235191   PMID:22629441   PMID:22682244   PMID:22819339   PMID:22912418   PMID:22930543   PMID:23041177  
PMID:23047985   PMID:23133671   PMID:23250216   PMID:23322300   PMID:23358455   PMID:23361844   PMID:23536097   PMID:24067353   PMID:24145799   PMID:24194600   PMID:24198358   PMID:24812002  
PMID:24859004   PMID:24952961   PMID:25624266   PMID:25691658   PMID:25721301   PMID:25916343   PMID:26160903   PMID:26341559   PMID:26487719   PMID:26511239   PMID:26550799   PMID:26661618  
PMID:26666435   PMID:26748348   PMID:27144312   PMID:27405641   PMID:27626380   PMID:27633990   PMID:27770432   PMID:28527696   PMID:28644741   PMID:28694256   PMID:28818950   PMID:29073177  
PMID:29140246   PMID:29168327   PMID:29180744   PMID:29437780   PMID:30504125   PMID:31412026   PMID:31609468   PMID:31988190   PMID:32243674   PMID:32561646   PMID:33329029   PMID:33505317  
PMID:33580754   PMID:33795231   PMID:34124068   PMID:34254395   PMID:34321664   PMID:34321999   PMID:34719815   PMID:34757798   PMID:34929174   PMID:35020897   PMID:35114852   PMID:35974052  
PMID:37341808   PMID:38355793  


Genomics

Comparative Map Data
Fgf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397144,392,349 - 144,397,085 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7144,391,820 - 144,398,173 (+)EnsemblGRCm39 Ensembl
GRCm387144,838,612 - 144,843,348 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7144,838,083 - 144,844,436 (+)EnsemblGRCm38mm10GRCm38
MGSCv377152,024,517 - 152,029,253 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367144,648,098 - 144,652,378 (+)NCBIMGSCv36mm8
Celera7144,602,541 - 144,607,277 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.85NCBI
FGF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381169,809,968 - 69,819,416 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1169,809,968 - 69,819,416 (-)EnsemblGRCh38hg38GRCh38
GRCh371169,624,736 - 69,634,184 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361169,333,917 - 69,343,129 (-)NCBINCBI36Build 36hg18NCBI36
Build 341169,333,916 - 69,343,129NCBI
Celera1166,921,757 - 66,931,244 (-)NCBICelera
Cytogenetic Map11q13.3NCBI
HuRef1165,917,066 - 65,926,354 (-)NCBIHuRef
CHM1_11169,507,656 - 69,517,018 (-)NCBICHM1_1
T2T-CHM13v2.01169,826,890 - 69,836,324 (-)NCBIT2T-CHM13v2.0
Fgf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81209,430,457 - 209,434,832 (+)NCBIGRCr8
mRatBN7.21200,001,162 - 200,005,539 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1200,001,261 - 200,005,187 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1208,384,758 - 208,388,679 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,468,695 - 215,472,617 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01208,142,888 - 208,146,810 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01218,003,018 - 218,006,942 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,003,018 - 218,006,942 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01224,872,403 - 224,876,327 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41205,269,480 - 205,273,404 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11205,422,932 - 205,426,857 (+)NCBI
Celera1197,559,343 - 197,563,267 (+)NCBICelera
Cytogenetic Map1q42NCBI
Fgf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542216,333,363 - 16,339,853 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542216,333,363 - 16,339,853 (+)NCBIChiLan1.0ChiLan1.0
FGF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2970,775,476 - 70,785,000 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11171,818,641 - 71,828,121 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01164,905,658 - 64,915,175 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11168,197,962 - 68,207,036 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1168,197,962 - 68,207,042 (-)Ensemblpanpan1.1panPan2
FGF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11848,382,819 - 48,388,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1848,383,222 - 48,389,009 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1846,990,863 - 46,998,466 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01849,057,796 - 49,065,400 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1849,057,796 - 49,065,400 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11848,504,675 - 48,512,248 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01848,091,070 - 48,098,649 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01848,836,772 - 48,844,382 (+)NCBIUU_Cfam_GSD_1.0
Fgf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049474,426,011 - 4,433,296 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936599868,634 - 875,464 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936599868,634 - 875,464 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl23,489,009 - 3,497,533 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.123,489,208 - 3,496,532 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.221,966,360 - 1,973,649 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FGF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114,746,195 - 4,755,654 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14,746,696 - 4,754,924 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038102,019,934 - 102,028,917 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476717,353,989 - 17,360,705 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476717,353,989 - 17,360,857 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fgf3
143 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:842
Count of miRNA genes:538
Interacting mature miRNAs:640
Transcripts:ENSMUST00000105898, ENSMUST00000155320
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301590Pbwg3_mpostnatal body weight growth 3 (mouse)Not determined7127311241144995196Mouse
1300566Sluc8_msusceptibility to lung cancer 8 (mouse)Not determined7127398151144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
14746988Manh63_mmandible shape 63 (mouse)7127735437144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse

Markers in Region
Fgf3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F5UniSTS
cM Map772.4UniSTS
cM Map772.4UniSTS
cM Map772.4UniSTS
cM Map772.4UniSTS
Y00848  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387144,843,832 - 144,843,915UniSTSGRCm38
MGSCv377152,029,737 - 152,029,820UniSTSGRCm37
Celera7144,607,761 - 144,607,844UniSTS
Cytogenetic Map7F5UniSTS
cM Map772.4UniSTS
Whitehead/MRC_RH71475.14UniSTS
D7Nds4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387144,844,414 - 144,844,577UniSTSGRCm38
MGSCv377152,030,319 - 152,030,482UniSTSGRCm37
Celera7144,608,343 - 144,608,506UniSTS
Cytogenetic Map7F5UniSTS
cM Map772.4UniSTS
Fgf3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F5UniSTS
Fgf3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F5UniSTS
Fgf3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F5UniSTS
cM Map772.4UniSTS
Fgf3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F5UniSTS
cM Map772.4UniSTS
Fgf3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F5UniSTS
cM Map772.4UniSTS
Fgf3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F5UniSTS
Y00848  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387144,844,183 - 144,844,372UniSTSGRCm38
MGSCv377152,030,088 - 152,030,277UniSTSGRCm37
Celera7144,608,112 - 144,608,301UniSTS
Cytogenetic Map7F5UniSTS
Whitehead/MRC_RH71491.86UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000105898   ⟹   ENSMUSP00000101518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7144,392,332 - 144,398,173 (+)Ensembl
GRCm38.p6 Ensembl7144,838,595 - 144,844,436 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155320   ⟹   ENSMUSP00000115205
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7144,391,820 - 144,396,456 (+)Ensembl
GRCm38.p6 Ensembl7144,838,083 - 144,842,719 (+)Ensembl
RefSeq Acc Id: NM_008007   ⟹   NP_032033
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397144,392,349 - 144,397,085 (+)NCBI
GRCm387144,838,612 - 144,843,348 (+)NCBI
MGSCv377152,024,517 - 152,029,253 (+)RGD
Celera7144,602,541 - 144,607,277 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032033   ⟸   NM_008007
- Peptide Label: precursor
- UniProtKB: Q61736 (UniProtKB/Swiss-Prot),   P05524 (UniProtKB/Swiss-Prot),   Q0VG15 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000101518   ⟸   ENSMUST00000105898
Ensembl Acc Id: ENSMUSP00000115205   ⟸   ENSMUST00000155320

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P05524-F1-model_v2 AlphaFold P05524 1-245 view protein structure

Promoters
RGD ID:8666291
Promoter ID:EPDNEW_M11177
Type:multiple initiation site
Name:Fgf3_1
Description:Mus musculus fibroblast growth factor 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387144,838,609 - 144,838,669EPDNEW
RGD ID:6841107
Promoter ID:MM_KWN:53444
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000105898,   OTTMUST00000076861
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367152,023,611 - 152,024,111 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95517 AgrOrtholog
Ensembl Genes ENSMUSG00000031074 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000105898 ENTREZGENE
Gene3D-CATH 2.80.10.50 UniProtKB/Swiss-Prot
InterPro Fibroblast_GF_fam UniProtKB/Swiss-Prot
  IL1/FGF UniProtKB/Swiss-Prot
MGD MGI:95517 ENTREZGENE
NCBI Gene 14174 ENTREZGENE
PANTHER PTHR11486 UniProtKB/Swiss-Prot
Pfam FGF UniProtKB/Swiss-Prot
PhenoGen Fgf3 PhenoGen
PRINTS HBGFFGF UniProtKB/Swiss-Prot
  IL1HBGF UniProtKB/Swiss-Prot
PROSITE HBGF_FGF UniProtKB/Swiss-Prot
SMART FGF UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50353 UniProtKB/Swiss-Prot
UniProt D3YWD4_MOUSE UniProtKB/TrEMBL
  FGF3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q0VG15 ENTREZGENE, UniProtKB/TrEMBL
  Q61736 ENTREZGENE
UniProt Secondary Q61736 UniProtKB/Swiss-Prot