P3h1 (prolyl 3-hydroxylase 1) - Rat Genome Database

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Gene: P3h1 (prolyl 3-hydroxylase 1) Mus musculus
Analyze
Symbol: P3h1
Name: prolyl 3-hydroxylase 1
RGD ID: 732133
MGI Page MGI
Description: Predicted to enable procollagen-proline 3-dioxygenase activity. Acts upstream of or within collagen fibril organization; negative regulation of cell growth; and regulation of ossification. Predicted to be located in basement membrane; cytoplasm; and nucleus. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including alimentary system; genitourinary system; limb mesenchyme; sensory organ; and skeleton. Used to study osteogenesis imperfecta type 8. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 8. Orthologous to human P3H1 (prolyl 3-hydroxylase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410024C15Rik; Gr; Gros1; growth suppressor 1; growth supressor 1; Lep; Lepre1; leprecan 1; leprecan-1; leucine- and proline-enriched proteoglycan 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394119,090,112 - 119,106,174 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4119,090,112 - 119,106,172 (+)EnsemblGRCm39 Ensembl
GRCm384119,232,915 - 119,248,977 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4119,232,915 - 119,248,975 (+)EnsemblGRCm38mm10GRCm38
MGSCv374118,905,520 - 118,921,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,730,878 - 118,746,299 (+)NCBIMGSCv36mm8
Celera4117,960,655 - 117,976,715 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map455.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Molecular characterization of a novel basement membrane-associated proteoglycan, leprecan. Wassenhove-McCarthy DJ and McCarthy KJ, J Biol Chem 1999 Aug 27;274(35):25004-17.
Additional References at PubMed
PMID:10349636   PMID:10951563   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15044469   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:18487197   PMID:18798549   PMID:19272164   PMID:19652424   PMID:20363744   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23186870   PMID:23861401   PMID:24043621   PMID:24194600  
PMID:24465224   PMID:24952082   PMID:26808442   PMID:30550785   PMID:32220631   PMID:37839992  


Genomics

Comparative Map Data
P3h1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394119,090,112 - 119,106,174 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4119,090,112 - 119,106,172 (+)EnsemblGRCm39 Ensembl
GRCm384119,232,915 - 119,248,977 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4119,232,915 - 119,248,975 (+)EnsemblGRCm38mm10GRCm38
MGSCv374118,905,520 - 118,921,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,730,878 - 118,746,299 (+)NCBIMGSCv36mm8
Celera4117,960,655 - 117,976,715 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map455.34NCBI
P3H1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38142,746,374 - 42,767,028 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl142,746,335 - 42,767,084 (-)EnsemblGRCh38hg38GRCh38
GRCh37143,212,045 - 43,232,699 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36142,984,633 - 43,005,270 (-)NCBINCBI36Build 36hg18NCBI36
Celera141,493,937 - 41,514,687 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,331,989 - 41,352,738 (-)NCBIHuRef
CHM1_1143,328,805 - 43,349,560 (-)NCBICHM1_1
T2T-CHM13v2.0142,616,864 - 42,637,518 (-)NCBIT2T-CHM13v2.0
P3h1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25132,841,868 - 132,856,664 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5132,841,928 - 132,856,659 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5135,569,568 - 135,584,262 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05137,326,032 - 137,340,722 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05137,346,618 - 137,361,308 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05138,279,597 - 138,294,280 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5138,279,506 - 138,294,262 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05142,091,640 - 142,106,916 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45139,816,323 - 139,831,409 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15139,821,548 - 139,836,635 (+)NCBI
Celera5131,367,576 - 131,382,262 (+)NCBICelera
Cytogenetic Map5q36NCBI
P3h1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,275,599 - 2,292,303 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,276,080 - 2,292,303 (-)NCBIChiLan1.0ChiLan1.0
P3H1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11183,187,228 - 183,206,973 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,046,128 - 42,065,718 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1143,423,579 - 43,443,443 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl143,423,900 - 43,443,336 (-)Ensemblpanpan1.1panPan2
P3H1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115603,436 - 621,839 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15603,329 - 621,568 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha15859,084 - 876,791 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.015685,742 - 703,402 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl15685,532 - 703,398 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.115595,219 - 612,872 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.015656,713 - 674,330 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.015671,787 - 689,446 (+)NCBIUU_Cfam_GSD_1.0
P3h1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,252,481 - 58,268,592 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,075,312 - 24,093,399 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647424,077,270 - 24,093,399 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
P3H1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6168,668,311 - 168,687,829 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16168,668,275 - 168,687,832 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26156,143,283 - 156,159,092 (+)NCBISscrofa10.2Sscrofa10.2susScr3
P3H1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12090,166,622 - 90,185,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2090,166,700 - 90,186,115 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603326,724,625 - 26,743,984 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
P3h1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248921,988,096 - 2,003,319 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248921,988,309 - 2,003,285 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in P3h1
499 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3198
Count of miRNA genes:731
Interacting mature miRNAs:954
Transcripts:ENSMUST00000030393, ENSMUST00000081606, ENSMUST00000102662, ENSMUST00000121111, ENSMUST00000123963, ENSMUST00000126056, ENSMUST00000127087, ENSMUST00000131875, ENSMUST00000134548, ENSMUST00000136278, ENSMUST00000142361, ENSMUST00000153940
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101574601123127211Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4110857197125893793Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115030777129465915Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301996Mmtg2_mmodifier of mammary tumor growth 2 (mouse)Not determined4116270979124055180Mouse
4141330Iva1_misovaleric acid smelling 1 (mouse)Not determined117071971120723203Mouse
12904006Cfq1_mconditioned fear QTL 1 (mouse)4117177646120107755Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
12903992Opfaq6_mopen field activity QTL 6 (mouse)4119064995121366497Mouse

Markers in Region
Lepre1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv374118,920,506 - 118,920,901UniSTSGRCm37
Celera4117,975,639 - 117,976,034UniSTS
cM Map4 UniSTS
Lepre1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384119,247,901 - 119,248,296UniSTSGRCm38
MGSCv374118,920,506 - 118,920,901UniSTSGRCm37
Celera4117,975,639 - 117,976,034UniSTS
Cytogenetic Map4D1UniSTS
cM Map4 UniSTS
Lepre1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001042411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_149723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF165163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF165164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB617770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY240019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO040878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX563255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000030393   ⟹   ENSMUSP00000030393
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,090,136 - 119,106,172 (+)Ensembl
GRCm38.p6 Ensembl4119,232,939 - 119,248,975 (+)Ensembl
RefSeq Acc Id: ENSMUST00000081606   ⟹   ENSMUSP00000080312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,091,029 - 119,106,170 (+)Ensembl
GRCm38.p6 Ensembl4119,233,832 - 119,248,973 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102662   ⟹   ENSMUSP00000099723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,090,143 - 119,106,169 (+)Ensembl
GRCm38.p6 Ensembl4119,232,946 - 119,248,972 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121111   ⟹   ENSMUSP00000112504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,090,112 - 119,106,169 (+)Ensembl
GRCm38.p6 Ensembl4119,232,915 - 119,248,972 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,095,139 - 119,101,346 (+)Ensembl
GRCm38.p6 Ensembl4119,237,942 - 119,244,149 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126056
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,090,997 - 119,094,129 (+)Ensembl
GRCm38.p6 Ensembl4119,233,800 - 119,236,932 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,104,059 - 119,105,251 (+)Ensembl
GRCm38.p6 Ensembl4119,246,862 - 119,248,054 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131875
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,092,541 - 119,098,692 (+)Ensembl
GRCm38.p6 Ensembl4119,235,344 - 119,241,495 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,103,836 - 119,105,569 (+)Ensembl
GRCm38.p6 Ensembl4119,246,639 - 119,248,372 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136278   ⟹   ENSMUSP00000119695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,090,151 - 119,105,566 (+)Ensembl
GRCm38.p6 Ensembl4119,232,954 - 119,248,369 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142361
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,102,217 - 119,105,330 (+)Ensembl
GRCm38.p6 Ensembl4119,245,020 - 119,248,133 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4119,090,143 - 119,105,564 (+)Ensembl
GRCm38.p6 Ensembl4119,232,946 - 119,248,367 (+)Ensembl
RefSeq Acc Id: NM_001042411   ⟹   NP_001035874
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394119,091,026 - 119,106,174 (+)NCBI
GRCm384119,233,829 - 119,248,977 (+)NCBI
MGSCv374118,905,520 - 118,921,582 (+)RGD
Celera4117,960,655 - 117,976,715 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001286148   ⟹   NP_001273077
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394119,090,112 - 119,106,174 (+)NCBI
GRCm384119,232,915 - 119,248,977 (+)NCBI
Celera4117,960,655 - 117,976,715 (+)NCBI
Sequence:
RefSeq Acc Id: NM_019782   ⟹   NP_062756
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394119,090,112 - 119,106,174 (+)NCBI
GRCm384119,232,915 - 119,248,977 (+)NCBI
MGSCv374118,905,520 - 118,921,582 (+)RGD
Celera4117,960,655 - 117,976,715 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_019783   ⟹   NP_062757
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394119,090,112 - 119,106,174 (+)NCBI
GRCm384119,232,915 - 119,248,977 (+)NCBI
MGSCv374118,905,520 - 118,921,582 (+)RGD
Celera4117,960,655 - 117,976,715 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_149723
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394119,090,112 - 119,106,174 (+)NCBI
GRCm384119,232,915 - 119,248,977 (+)NCBI
Sequence:
RefSeq Acc Id: NP_062757   ⟸   NM_019783
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9QZT6 (UniProtKB/Swiss-Prot),   Q9CWK5 (UniProtKB/Swiss-Prot),   Q8CFL3 (UniProtKB/Swiss-Prot),   Q8BSV2 (UniProtKB/Swiss-Prot),   Q3TWX8 (UniProtKB/Swiss-Prot),   A6PW85 (UniProtKB/Swiss-Prot),   A2A7Q4 (UniProtKB/Swiss-Prot),   Q9QZT7 (UniProtKB/Swiss-Prot),   Q3V1T4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_062756   ⟸   NM_019782
- Peptide Label: isoform 1 precursor
- UniProtKB: A2A7Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001035874   ⟸   NM_001042411
- Peptide Label: isoform 3
- UniProtKB: Q3V1T4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273077   ⟸   NM_001286148
- Peptide Label: isoform 4 precursor
- UniProtKB: A6PW84 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000112504   ⟸   ENSMUST00000121111
RefSeq Acc Id: ENSMUSP00000080312   ⟸   ENSMUST00000081606
RefSeq Acc Id: ENSMUSP00000030393   ⟸   ENSMUST00000030393
RefSeq Acc Id: ENSMUSP00000119695   ⟸   ENSMUST00000136278
RefSeq Acc Id: ENSMUSP00000099723   ⟸   ENSMUST00000102662
Protein Domains
Fe2OG dioxygenase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3V1T4-F1-model_v2 AlphaFold Q3V1T4 1-739 view protein structure

Promoters
RGD ID:6836236
Promoter ID:MM_KWN:39349
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000106336,   ENSMUST00000121111,   NM_001042411,   NM_019783,   OTTMUST00000020331,   OTTMUST00000020332,   OTTMUST00000020333,   OTTMUST00000020334,   OTTMUST00000020881,   OTTMUST00000020882,   OTTMUST00000020883,   OTTMUST00000020885
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364118,905,256 - 118,906,872 (-)MPROMDB
RGD ID:6835565
Promoter ID:MM_KWN:39353
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000020887,   OTTMUST00000020888
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364118,918,316 - 118,918,816 (+)MPROMDB
RGD ID:6884444
Promoter ID:EPDNEW_M5673
Type:initiation region
Name:P3h1_1
Description:Mus musculus prolyl 3-hydroxylase 1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384119,232,930 - 119,232,990EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1888921 AgrOrtholog
Ensembl Genes ENSMUSG00000028641 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030393 ENTREZGENE
  ENSMUST00000030393.13 UniProtKB/TrEMBL
  ENSMUST00000081606 ENTREZGENE
  ENSMUST00000081606.7 UniProtKB/Swiss-Prot
  ENSMUST00000102662 ENTREZGENE
  ENSMUST00000102662.11 UniProtKB/TrEMBL
  ENSMUST00000121111 ENTREZGENE
  ENSMUST00000121111.9 UniProtKB/Swiss-Prot
  ENSMUST00000136278.8 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  q2cbj1_9rhob like domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Oxoglu/Fe-dep_dioxygenase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P3H UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pro_4_hyd_alph UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pro_4_hyd_alph_FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56401 UniProtKB/Swiss-Prot
MGD MGI:1888921 ENTREZGENE
NCBI Gene 56401 ENTREZGENE
PANTHER PROLYL 3-HYDROXYLASE 1-LIKE PROTEIN UniProtKB/TrEMBL
  PROTEIN LYSINE HYDROXYLATION COMPLEX COMPONENT UniProtKB/TrEMBL
  PTHR14049 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14049:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 2OG-FeII_Oxy_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen P3h1 PhenoGen
PROSITE ER_TARGET UniProtKB/Swiss-Prot
  FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART P4Hc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A7Q4 ENTREZGENE
  A2A7Q5 ENTREZGENE, UniProtKB/TrEMBL
  A6PW84 ENTREZGENE, UniProtKB/TrEMBL
  A6PW85 ENTREZGENE
  F2Z499_MOUSE UniProtKB/TrEMBL
  P3H1_MOUSE UniProtKB/Swiss-Prot
  Q3TWX8 ENTREZGENE
  Q3V1T4 ENTREZGENE
  Q8BSV2 ENTREZGENE
  Q8CFL3 ENTREZGENE
  Q9CWK5 ENTREZGENE
  Q9QZT6 ENTREZGENE
  Q9QZT7 ENTREZGENE
UniProt Secondary A2A7Q4 UniProtKB/Swiss-Prot
  A6PW85 UniProtKB/Swiss-Prot
  Q3TWX8 UniProtKB/Swiss-Prot
  Q8BSV2 UniProtKB/Swiss-Prot
  Q8CFL3 UniProtKB/Swiss-Prot
  Q9CWK5 UniProtKB/Swiss-Prot
  Q9QZT6 UniProtKB/Swiss-Prot
  Q9QZT7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-12-30 P3h1  prolyl 3-hydroxylase 1  Lepre1  leprecan 1  Symbol and/or name change 5135510 APPROVED