Gp1bb (glycoprotein Ib, beta polypeptide) - Rat Genome Database

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Gene: Gp1bb (glycoprotein Ib, beta polypeptide) Mus musculus
Analyze
Symbol: Gp1bb
Name: glycoprotein Ib, beta polypeptide
RGD ID: 732124
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Involved in blood coagulation and megakaryocyte development. Predicted to be located in plasma membrane. Predicted to be part of glycoprotein Ib-IX-V complex. Is expressed in central nervous system; heart; male reproductive gland or organ; retina; and yolk sac. Used to study Bernard-Soulier syndrome. Human ortholog(s) of this gene implicated in Bernard-Soulier syndrome. Orthologous to human GP1BB (glycoprotein Ib platelet subunit beta).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GP-Ib beta; GPIb-beta; GPIbB; platelet glycoprotein Ib beta chain
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,439,069 - 18,441,153 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,439,067 - 18,441,153 (-)EnsemblGRCm39 Ensembl
GRCm381618,620,319 - 18,622,403 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,620,317 - 18,622,403 (-)EnsemblGRCm38mm10GRCm38
MGSCv371618,620,412 - 18,622,496 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361618,533,882 - 18,535,966 (-)NCBIMGSCv36mm8
Celera1619,194,412 - 19,196,496 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The vascular biology of the glycoprotein Ib-IX-V complex. Berndt MC, etal., Thromb Haemost. 2001 Jul;86(1):178-88.
2. Patients with Bernard-Soulier syndrome and different severity of the bleeding phenotype. Boeckelmann D, etal., Blood Cells Mol Dis. 2017 Sep;67:69-74. doi: 10.1016/j.bcmd.2017.01.010. Epub 2017 Jan 22.
3. Missense mutations of the glycoprotein (GP) Ib beta gene impairing the GPIb alpha/beta disulfide linkage in a family with giant platelet disorder. Kunishima S, etal., Blood. 1997 Apr 1;89(7):2404-12.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Decreased thrombotic tendency in mouse models of the Bernard-Soulier syndrome. Strassel C, etal., Arterioscler Thromb Vasc Biol. 2007 Jan;27(1):241-7. Epub 2006 Nov 9.
12. Bernard-soulier syndrome with a homozygous 13 base pair deletion in the signal peptide-coding region of the platelet glycoprotein Ib(beta) gene. Watanabe R, etal., Blood Coagul Fibrinolysis. 2003 Jun;14(4):387-94.
Additional References at PubMed
PMID:8889548   PMID:9259114   PMID:9337409   PMID:9371744   PMID:9383280   PMID:9405660   PMID:9740669   PMID:9931461   PMID:10337614   PMID:10704284   PMID:10963672   PMID:11239417  
PMID:11709542   PMID:11816713   PMID:12466851   PMID:12477932   PMID:14614146   PMID:15213102   PMID:15778864   PMID:16602821   PMID:18187573   PMID:19377075   PMID:19808696   PMID:20457869  
PMID:20876651   PMID:21037087   PMID:22387002   PMID:22921202   PMID:23336709   PMID:24051142   PMID:24131868   PMID:24194600   PMID:26418893   PMID:27148783   PMID:27626380   PMID:28378742  
PMID:28943410   PMID:34732055   PMID:38355793  


Genomics

Comparative Map Data
Gp1bb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,439,069 - 18,441,153 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1618,439,067 - 18,441,153 (-)EnsemblGRCm39 Ensembl
GRCm381618,620,319 - 18,622,403 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,620,317 - 18,622,403 (-)EnsemblGRCm38mm10GRCm38
MGSCv371618,620,412 - 18,622,496 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361618,533,882 - 18,535,966 (-)NCBIMGSCv36mm8
Celera1619,194,412 - 19,196,496 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.53NCBI
GP1BB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,723,539 - 19,724,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,723,539 - 19,724,771 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,711,062 - 19,712,294 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,091,066 - 18,092,297 (+)NCBINCBI36Build 36hg18NCBI36
Build 342218,085,619 - 18,086,848NCBI
Celera223,563,179 - 3,564,410 (+)NCBICelera
Cytogenetic Map22q11.21ENTREZGENE
HuRef223,331,052 - 3,332,283 (+)NCBIHuRef
CHM1_12219,710,630 - 19,711,861 (+)NCBICHM1_1
T2T-CHM13v2.02220,100,330 - 20,101,562 (+)NCBIT2T-CHM13v2.0
Gp1bb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81195,882,561 - 95,883,738 (+)NCBIGRCr8
mRatBN7.21182,378,216 - 82,379,393 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,378,199 - 82,379,392 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1191,107,863 - 91,109,040 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01183,769,069 - 83,770,246 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01182,822,585 - 82,823,762 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01186,520,992 - 86,522,169 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,520,992 - 86,522,169 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01189,620,984 - 89,622,161 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,369,795 - 84,370,972 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11184,405,789 - 84,411,568 (+)NCBI
Celera1181,154,033 - 81,155,210 (+)NCBICelera
Cytogenetic Map11q23NCBI
Gp1bb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,359,664 - 18,360,979 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,359,664 - 18,360,979 (-)NCBIChiLan1.0ChiLan1.0
GP1BB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22329,351,021 - 29,352,346 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12231,898,748 - 31,900,073 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0222,485,350 - 2,486,688 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
GP1BB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12629,567,437 - 29,568,627 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2629,528,366 - 29,568,522 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2629,524,678 - 29,525,676 (-)NCBIDog10K_Boxer_Tasha
Gp1bb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118139,124,933 - 139,126,427 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,627,999 - 3,628,859 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,627,649 - 3,629,129 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GP1BB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,260,963 - 51,262,114 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11451,261,097 - 51,261,903 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,900,394 - 54,901,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GP1BB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,020,618 - 6,021,646 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666085904,704 - 906,255 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gp1bb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624747352,165 - 354,170 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624747352,129 - 354,173 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:336
Count of miRNA genes:262
Interacting mature miRNAs:279
Transcripts:ENSMUST00000051160, ENSMUST00000167388
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
15092082Igly9_mIgG glycosylation 9, GP17b (mouse)161477522320103513Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse

Markers in Region
UniSTS:237456  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381618,620,502 - 18,620,722UniSTSGRCm38
MGSCv371618,620,595 - 18,620,815UniSTSGRCm37
Celera1619,194,595 - 19,194,815UniSTS
Cytogenetic Map16A3UniSTS
cM Map1611.4UniSTS
Gp1bb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381618,621,901 - 18,622,061UniSTSGRCm38
MGSCv371618,621,994 - 18,622,154UniSTSGRCm37
Celera1619,195,994 - 19,196,154UniSTS
Cytogenetic Map16A3UniSTS
cM Map1611.4UniSTS
Gp1bb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381618,620,612 - 18,621,134UniSTSGRCm38
MGSCv371618,620,705 - 18,621,227UniSTSGRCm37
Celera1619,194,705 - 19,195,227UniSTS
Cytogenetic Map16A3UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000051160   ⟹   ENSMUSP00000059270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1618,439,069 - 18,441,153 (-)Ensembl
GRCm38.p6 Ensembl1618,620,319 - 18,622,403 (-)Ensembl
Ensembl Acc Id: ENSMUST00000167388   ⟹   ENSMUSP00000126292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1618,439,067 - 18,440,390 (-)Ensembl
GRCm38.p6 Ensembl1618,620,317 - 18,621,640 (-)Ensembl
RefSeq Acc Id: NM_001001999   ⟹   NP_001001999
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391618,439,069 - 18,441,153 (-)NCBI
GRCm381618,620,319 - 18,622,403 (-)ENTREZGENE
MGSCv371618,620,412 - 18,622,496 (-)RGD
Celera1619,194,412 - 19,196,496 (-)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_010327   ⟹   NP_034457
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391618,439,069 - 18,441,153 (-)NCBI
GRCm381618,620,319 - 18,622,403 (-)ENTREZGENE
MGSCv371618,620,412 - 18,622,496 (-)RGD
Celera1619,194,412 - 19,196,496 (-)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_001001999   ⟸   NM_001001999
- Peptide Label: isoform 1 precursor
- UniProtKB: B2RR03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_034457   ⟸   NM_010327
- Peptide Label: isoform 2 precursor
- UniProtKB: P56400 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000059270   ⟸   ENSMUST00000051160
Ensembl Acc Id: ENSMUSP00000126292   ⟸   ENSMUST00000167388
Protein Domains
LRRCT   LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P56400-F1-model_v2 AlphaFold P56400 1-206 view protein structure

Promoters
RGD ID:6827104
Promoter ID:MM_KWN:20402
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:NM_001001999,   NM_010327
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361618,621,436 - 18,623,287 (-)MPROMDB
RGD ID:8685686
Promoter ID:EPDNEW_M20874
Type:initiation region
Name:Gp1bb_1
Description:Mus musculus glycoprotein Ib, beta polypeptide , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20875  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381618,621,609 - 18,621,669EPDNEW
RGD ID:8685688
Promoter ID:EPDNEW_M20875
Type:initiation region
Name:Gp1bb_2
Description:Mus musculus glycoprotein Ib, beta polypeptide , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20874  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381618,622,444 - 18,622,504EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107852 AgrOrtholog
Ensembl Genes ENSMUSG00000050761 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000051160 ENTREZGENE
  ENSMUST00000051160.4 UniProtKB/TrEMBL
  ENSMUST00000167388 ENTREZGENE
  ENSMUST00000167388.3 UniProtKB/Swiss-Prot
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPIb-IX-V_Complex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14724 UniProtKB/Swiss-Prot
MGD MGI:107852 ENTREZGENE
NCBI Gene 14724 ENTREZGENE
PANTHER GLYCOPROTEIN IB BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLATELET GLYCOPROTEIN IB BETA CHAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gp1bb PhenoGen
SMART LRRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RR03 ENTREZGENE, UniProtKB/TrEMBL
  GP1BB_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE