Efna5 (ephrin A5) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Efna5 (ephrin A5) Mus musculus
Analyze
Symbol: Efna5
Name: ephrin A5
RGD ID: 732052
MGI Page MGI
Description: Enables chemorepellent activity; ephrin receptor binding activity; and neurotrophin TRKB receptor binding activity. Involved in several processes, including ephrin receptor signaling pathway; positive regulation of nervous system development; and synaptic membrane adhesion. Acts upstream of or within cellular response to follicle-stimulating hormone stimulus; cellular response to forskolin; and retinal ganglion cell axon guidance. Located in adherens junction; basement membrane; and plasma membrane. Is active in GABA-ergic synapse. Is expressed in several structures, including alimentary system; embryo ectoderm; limb; nervous system; and sensory organ. Used to study anencephaly. Orthologous to human EFNA5 (ephrin A5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AL; AL-1; AV158822; EFL-; EFL-5; Ep; EPH-related receptor tyrosine kinase ligand 7; Ephr; ephrin-A5; Epl7; LERK; LERK-7; R; RAGS
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391762,909,949 - 63,188,431 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1762,911,179 - 63,188,312 (-)EnsemblGRCm39 Ensembl
GRCm381762,602,957 - 62,881,317 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1762,604,184 - 62,881,317 (-)EnsemblGRCm38mm10GRCm38
MGSCv371762,952,306 - 63,230,666 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361762,290,210 - 62,566,779 (-)NCBIMGSCv36mm8
Celera1766,941,186 - 67,218,870 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1732.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (EXP)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP,ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
choline  (EXP)
cocaine  (ISO)
Cuprizon  (ISO)
decabromodiphenyl ether  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (EXP)
folic acid  (EXP)
fulvestrant  (ISO)
furosemide  (ISO)
gentamycin  (ISO)
glyphosate  (ISO)
indole-3-methanol  (ISO)
L-methionine  (EXP)
lipopolysaccharide  (ISO)
melphalan  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
PD 0325901  (ISO)
permethrin  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
rimonabant  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
troglitazone  (EXP)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. FGFR1 is independently required in both developing mid- and hindbrain for sustained response to isthmic signals. Trokovic R, etal., EMBO J 2003 Apr 15;22(8):1811-23.
Additional References at PubMed
PMID:7671812   PMID:8661153   PMID:8755474   PMID:8889548   PMID:8903354   PMID:8954746   PMID:9053851   PMID:9247260   PMID:9247335   PMID:9267020   PMID:9491985   PMID:9614241  
PMID:9883724   PMID:9988220   PMID:10349636   PMID:10490025   PMID:10495276   PMID:10559410   PMID:10719886   PMID:10774725   PMID:10781950   PMID:10899175   PMID:10908626   PMID:10922068  
PMID:10952903   PMID:11042159   PMID:11076861   PMID:11089974   PMID:11217851   PMID:11222144   PMID:11439183   PMID:11567058   PMID:11703926   PMID:11748150   PMID:11807023   PMID:11830579  
PMID:11860487   PMID:12124402   PMID:12196586   PMID:12367504   PMID:12417660   PMID:12421703   PMID:12477932   PMID:12528186   PMID:12561075   PMID:12571102   PMID:12619132   PMID:12654290  
PMID:12666197   PMID:12684176   PMID:12895420   PMID:12914696   PMID:14585969   PMID:14681479   PMID:14749425   PMID:15107857   PMID:15163631   PMID:15172686   PMID:15258590   PMID:15489334  
PMID:15517401   PMID:15527895   PMID:15820684   PMID:15902206   PMID:15924339   PMID:15996548   PMID:16025107   PMID:16141072   PMID:16141073   PMID:16301174   PMID:16301175   PMID:16446123  
PMID:16491080   PMID:16571633   PMID:16602821   PMID:16690216   PMID:16902088   PMID:17022942   PMID:17039519   PMID:17167078   PMID:17304517   PMID:17442747   PMID:17448994   PMID:17470284  
PMID:17522309   PMID:17707797   PMID:17952132   PMID:18094231   PMID:18304481   PMID:18323671   PMID:18463505   PMID:18480159   PMID:18619851   PMID:18632942   PMID:18662335   PMID:18694724  
PMID:18755772   PMID:18799693   PMID:18830404   PMID:18945909   PMID:18948590   PMID:18957218   PMID:19036963   PMID:19111533   PMID:19247962   PMID:19279136   PMID:19402755   PMID:19521500  
PMID:19542359   PMID:19576892   PMID:19607792   PMID:19759535   PMID:19769959   PMID:19827157   PMID:20014408   PMID:20112066   PMID:20384808   PMID:20474079   PMID:20738842   PMID:20824214  
PMID:21060110   PMID:21060113   PMID:21192082   PMID:21465626   PMID:21490208   PMID:21628570   PMID:21677750   PMID:21791286   PMID:21873635   PMID:22000108   PMID:22021100   PMID:22065784  
PMID:22140528   PMID:22243746   PMID:22275477   PMID:22279234   PMID:22304922   PMID:22492355   PMID:22496572   PMID:22837401   PMID:22923088   PMID:22954718   PMID:23242526   PMID:23385583  
PMID:23401654   PMID:23425387   PMID:23475368   PMID:23657875   PMID:24036135   PMID:24262147   PMID:24360543   PMID:24427155   PMID:24457350   PMID:24550361   PMID:24707048   PMID:24803655  
PMID:24952961   PMID:25200515   PMID:25243788   PMID:25264256   PMID:25367067   PMID:25451192   PMID:25480914   PMID:25502292   PMID:25649160   PMID:25710467   PMID:25746458   PMID:26345456  
PMID:26452243   PMID:26490861   PMID:26509897   PMID:26643403   PMID:26666565   PMID:26672804   PMID:26674965   PMID:26777211   PMID:26839344   PMID:27100196   PMID:27344203   PMID:27535576  
PMID:27578777   PMID:27626380   PMID:28197551   PMID:28350297   PMID:28558017   PMID:28614915   PMID:29031500   PMID:29464193   PMID:29619874   PMID:29643395   PMID:29800803   PMID:30482614  
PMID:31082736   PMID:31300041   PMID:31577955   PMID:31597102   PMID:32314958   PMID:32518258   PMID:33102589   PMID:33181182   PMID:34235739   PMID:34321999   PMID:34854885   PMID:34899394  
PMID:34978559   PMID:35462405   PMID:36369193   PMID:37524711   PMID:37530910   PMID:38355793   PMID:38546215   PMID:38843837   PMID:39348458   PMID:39466050  


Genomics

Comparative Map Data
Efna5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391762,909,949 - 63,188,431 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1762,911,179 - 63,188,312 (-)EnsemblGRCm39 Ensembl
GRCm381762,602,957 - 62,881,317 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1762,604,184 - 62,881,317 (-)EnsemblGRCm38mm10GRCm38
MGSCv371762,952,306 - 63,230,666 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361762,290,210 - 62,566,779 (-)NCBIMGSCv36mm8
Celera1766,941,186 - 67,218,870 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1732.57NCBI
EFNA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385107,376,894 - 107,670,937 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5107,376,894 - 107,670,937 (-)EnsemblGRCh38hg38GRCh38
GRCh375106,712,595 - 107,006,638 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365106,744,250 - 107,034,495 (-)NCBINCBI36Build 36hg18NCBI36
Build 345106,744,249 - 107,034,495NCBI
Celera5102,652,515 - 102,946,033 (-)NCBICelera
Cytogenetic Map5q21.3NCBI
HuRef5101,885,499 - 102,179,416 (-)NCBIHuRef
CHM1_15106,145,383 - 106,439,350 (-)NCBICHM1_1
T2T-CHM13v2.05107,879,857 - 108,173,778 (-)NCBIT2T-CHM13v2.0
Efna5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89109,763,786 - 110,042,396 (-)NCBIGRCr8
mRatBN7.29102,316,753 - 102,595,480 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9102,320,295 - 102,597,413 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9110,731,253 - 111,005,043 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09115,846,837 - 116,120,820 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09114,197,132 - 114,470,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09110,054,002 - 110,329,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9110,057,155 - 110,225,486 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09109,624,143 - 109,898,215 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49101,227,615 - 101,532,696 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19101,437,094 - 101,742,176 (-)NCBI
Celera999,743,743 - 100,016,279 (-)NCBICelera
Cytogenetic Map9q37NCBI
Efna5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554186,920,919 - 7,185,478 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554186,919,270 - 7,188,561 (+)NCBIChiLan1.0ChiLan1.0
EFNA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24102,656,917 - 102,958,630 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15100,810,566 - 101,112,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05102,732,268 - 103,026,746 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15108,548,927 - 108,842,729 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5108,548,927 - 108,598,942 (-)Ensemblpanpan1.1panPan2
EFNA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.134,272,138 - 4,546,527 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl34,272,518 - 4,542,049 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha35,666,868 - 5,947,210 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.034,163,164 - 4,443,229 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl34,169,390 - 4,439,740 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.134,102,672 - 4,382,928 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.034,131,173 - 4,411,046 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.034,274,587 - 4,554,692 (+)NCBIUU_Cfam_GSD_1.0
Efna5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213159,344,414 - 159,394,038 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365312,217,368 - 2,300,794 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365312,217,467 - 2,267,265 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFNA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2112,534,949 - 112,815,827 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12112,533,124 - 112,821,293 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22117,052,889 - 117,095,595 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFNA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12310,823,243 - 11,115,175 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2310,823,261 - 10,873,666 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660363,139,584 - 3,432,471 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efna5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474325,341,132 - 25,611,564 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474325,336,851 - 25,611,698 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Efna5
9035 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2243
Count of miRNA genes:738
Interacting mature miRNAs:959
Transcripts:ENSMUST00000076840, ENSMUST00000078839, ENSMUST00000163332
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
4142201Obrq15_mobesity resistance QTL 15 (mouse)Not determined5753444780885776Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
14700692Cihvtq1_mcoxsackieviral infection heart viral titre QTL 1 (mouse)175000702870006995Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174371089167806995Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse

Markers in Region
Efna5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381762,607,266 - 62,607,463UniSTSGRCm38
MGSCv371762,956,615 - 62,956,812UniSTSGRCm37
Celera1766,945,491 - 66,945,688UniSTS
Cytogenetic Map17E1.1UniSTS
cM Map1733.5UniSTS
D17Mit183  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381762,740,500 - 62,740,733UniSTSGRCm38
MGSCv371763,089,849 - 63,090,082UniSTSGRCm37
Celera1767,078,082 - 67,078,334UniSTS
Cytogenetic Map17E1.1UniSTS
cM Map1734.3UniSTS
Whitehead Genetic1729.5UniSTS
UniSTS:237676  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381762,862,734 - 62,863,036UniSTSGRCm38
MGSCv371763,212,083 - 63,212,385UniSTSGRCm37
Celera1767,200,405 - 67,200,707UniSTS
Cytogenetic Map17E1.1UniSTS
UniSTS:237678  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381762,605,359 - 62,605,461UniSTSGRCm38
MGSCv371762,954,708 - 62,954,810UniSTSGRCm37
Celera1766,943,584 - 66,943,686UniSTS
Cytogenetic Map17E1.1UniSTS
BE116204  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381762,604,804 - 62,604,971UniSTSGRCm38
MGSCv371762,954,153 - 62,954,320UniSTSGRCm37
Celera1766,943,029 - 66,943,196UniSTS
Cytogenetic Map17E1.1UniSTS
AV158822  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381762,603,095 - 62,603,191UniSTSGRCm38
MGSCv371762,952,444 - 62,952,540UniSTSGRCm37
Celera1766,941,324 - 66,941,420UniSTS
Cytogenetic Map17E1.1UniSTS
WI-15986  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381762,603,003 - 62,603,109UniSTSGRCm38
MGSCv371762,952,352 - 62,952,458UniSTSGRCm37
Celera1766,941,232 - 66,941,338UniSTS
Cytogenetic Map17E1.1UniSTS
UniSTS:485023  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381762,685,766 - 62,686,887UniSTSGRCm38
MGSCv371763,035,115 - 63,036,236UniSTSGRCm37
Celera1767,024,004 - 67,025,125UniSTS
Cytogenetic Map17E1.1UniSTS
Efna5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17E1.1UniSTS
Efna5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17E1.1UniSTS
cM Map1733.5UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000076840   ⟹   ENSMUSP00000076115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1762,911,179 - 63,188,312 (-)Ensembl
GRCm38.p6 Ensembl1762,604,184 - 62,881,317 (-)Ensembl
Ensembl Acc Id: ENSMUST00000078839   ⟹   ENSMUSP00000077883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1762,914,314 - 63,188,139 (-)Ensembl
GRCm38.p6 Ensembl1762,607,319 - 62,881,144 (-)Ensembl
RefSeq Acc Id: NM_001413234   ⟹   NP_001400163
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391762,909,949 - 63,187,871 (-)NCBI
RefSeq Acc Id: NM_010109   ⟹   NP_034239
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391762,909,949 - 63,188,431 (-)NCBI
GRCm381762,602,957 - 62,881,317 (-)ENTREZGENE
MGSCv371762,952,306 - 63,230,666 (-)RGD
Celera1766,941,186 - 67,218,870 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_207654   ⟹   NP_997537
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391762,909,949 - 63,188,431 (-)NCBI
GRCm381762,602,957 - 62,881,317 (-)ENTREZGENE
MGSCv371762,952,306 - 63,230,666 (-)RGD
Celera1766,941,186 - 67,218,870 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_034239   ⟸   NM_010109
- Peptide Label: isoform 2 precursor
- UniProtKB: O08543 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_997537   ⟸   NM_207654
- Peptide Label: isoform 1 precursor
- UniProtKB: O08544 (UniProtKB/Swiss-Prot),   O08543 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000076115   ⟸   ENSMUST00000076840
Ensembl Acc Id: ENSMUSP00000077883   ⟸   ENSMUST00000078839
RefSeq Acc Id: NP_001400163   ⟸   NM_001413234
- Peptide Label: isoform 3
Protein Domains
Ephrin RBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08543-F1-model_v2 AlphaFold O08543 1-228 view protein structure

Promoters
RGD ID:13676604
Promoter ID:EPDNEW_M22451
Type:initiation region
Name:Efna5_1
Description:Mus musculus ephrin A5 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381762,881,408 - 62,881,468EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107444 AgrOrtholog
Ensembl Genes ENSMUSG00000048915 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000076840 ENTREZGENE
  ENSMUST00000076840.12 UniProtKB/Swiss-Prot
  ENSMUST00000078839 ENTREZGENE
  ENSMUST00000078839.5 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.420 UniProtKB/Swiss-Prot
InterPro Cupredoxin UniProtKB/Swiss-Prot
  Ephrin UniProtKB/Swiss-Prot
  Ephrin-A_Ecto UniProtKB/Swiss-Prot
  Ephrin_CS UniProtKB/Swiss-Prot
  Ephrin_RBD UniProtKB/Swiss-Prot
KEGG Report mmu:13640 UniProtKB/Swiss-Prot
MGD MGI:107444 ENTREZGENE
NCBI Gene 13640 ENTREZGENE
PANTHER EPHRIN-A5 UniProtKB/Swiss-Prot
  PTHR11304 UniProtKB/Swiss-Prot
Pfam Ephrin UniProtKB/Swiss-Prot
PhenoGen Efna5 PhenoGen
PRINTS EPHRIN UniProtKB/Swiss-Prot
PROSITE EPHRIN_RBD_1 UniProtKB/Swiss-Prot
  EPHRIN_RBD_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49503 UniProtKB/Swiss-Prot
UniProt EFNA5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  O08544 ENTREZGENE
  Q8BQD3_MOUSE UniProtKB/TrEMBL
UniProt Secondary O08544 UniProtKB/Swiss-Prot