Tcf12 (transcription factor 12) - Rat Genome Database

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Gene: Tcf12 (transcription factor 12) Mus musculus
Analyze
Symbol: Tcf12
Name: transcription factor 12
RGD ID: 731956
MGI Page MGI
Description: Enables E-box binding activity and protein heterodimerization activity. Involved in positive regulation of neuron differentiation. Acts upstream of or within positive regulation of DNA-templated transcription and positive regulation of gene expression. Part of transcription regulator complex. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; genitourinary system; and sensory organ. Human ortholog(s) of this gene implicated in craniosynostosis and hypogonadotropic hypogonadism. Orthologous to human TCF12 (transcription factor 12).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A130037E08Rik; AL; ALF1; bHLHb2; bHLHb20; class A helix-loop-helix transcription factor ME1; DNA-binding protein HTF4; E-box-binding protein; HEB; HEBA; HEBAlt; HTF-4; HTF4; ME1; RE; REB; RIKEN cDNA A130037E08 gene; TCF-12; transcription factor HTF-4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39971,751,534 - 72,019,611 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl971,749,970 - 72,019,153 (-)EnsemblGRCm39 Ensembl
GRCm38971,844,252 - 72,111,893 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl971,842,688 - 72,111,871 (-)EnsemblGRCm38mm10GRCm38
MGSCv37971,692,059 - 71,959,626 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36971,644,313 - 71,910,179 (-)NCBIMGSCv36mm8
Celera969,039,252 - 69,300,279 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
4-hydroperoxycyclophosphamide  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
cefaloridine  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
cytarabine  (ISO)
dimethylarsinous acid  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ellagic acid  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
gentamycin  (ISO)
geraniol  (ISO)
hydralazine  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
indirubin  (ISO)
irinotecan  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
methidathion  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (EXP)
N,N-diethyl-m-toluamide  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
permethrin  (ISO)
phenethyl isothiocyanate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
succimer  (EXP)
tetraphene  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
venlafaxine hydrochloride  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1321336   PMID:1922066   PMID:7791788   PMID:7842744   PMID:7984047   PMID:8001124   PMID:8261111   PMID:8649400   PMID:8759016   PMID:8833258   PMID:8861960   PMID:8948587  
PMID:8999959   PMID:9050988   PMID:9418957   PMID:9441766   PMID:10349636   PMID:10477603   PMID:10512203   PMID:10548422   PMID:10591541   PMID:10625627   PMID:10922068   PMID:10958665  
PMID:11042159   PMID:11076861   PMID:11217851   PMID:11562365   PMID:11784080   PMID:11937548   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12566462   PMID:12663500   PMID:14594209  
PMID:14610273   PMID:14681479   PMID:14681692   PMID:15018808   PMID:15189737   PMID:15193261   PMID:15226823   PMID:15351717   PMID:15840001   PMID:16141072   PMID:16141073   PMID:16214126  
PMID:16407974   PMID:16582099   PMID:16602821   PMID:16618939   PMID:16785505   PMID:16847330   PMID:16888011   PMID:16919269   PMID:17082585   PMID:17405739   PMID:17442955   PMID:17878293  
PMID:17967808   PMID:18093538   PMID:18214987   PMID:18287559   PMID:18384878   PMID:18557763   PMID:18799693   PMID:18854153   PMID:18958875   PMID:19204326   PMID:19741146   PMID:20059953  
PMID:20154672   PMID:20211142   PMID:20412781   PMID:20826759   PMID:21061441   PMID:21115673   PMID:21189289   PMID:21267068   PMID:21525287   PMID:21752929   PMID:21765815   PMID:21862448  
PMID:21873635   PMID:21972416   PMID:22425249   PMID:22585759   PMID:22674256   PMID:22696295   PMID:22988430   PMID:23354436   PMID:24123680   PMID:24379125   PMID:24470501   PMID:24952961  
PMID:25775035   PMID:27221705   PMID:27574032   PMID:27657450   PMID:28258196   PMID:28378742   PMID:28514688   PMID:28958789   PMID:29031500   PMID:29055695   PMID:29163030   PMID:29222418  
PMID:30217225   PMID:30375332   PMID:30420627   PMID:30578645   PMID:30622227   PMID:30770454   PMID:30898894   PMID:30936870   PMID:31201207   PMID:32098917   PMID:32179550   PMID:32266943  
PMID:32325033   PMID:32817168   PMID:33591268   PMID:33664480   PMID:33748999   PMID:34032268   PMID:34376651   PMID:34878091   PMID:35118353   PMID:35147187   PMID:35401501   PMID:36330928  
PMID:36352000  


Genomics

Comparative Map Data
Tcf12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39971,751,534 - 72,019,611 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl971,749,970 - 72,019,153 (-)EnsemblGRCm39 Ensembl
GRCm38971,844,252 - 72,111,893 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl971,842,688 - 72,111,871 (-)EnsemblGRCm38mm10GRCm38
MGSCv37971,692,059 - 71,959,626 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36971,644,313 - 71,910,179 (-)NCBIMGSCv36mm8
Celera969,039,252 - 69,300,279 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.85NCBI
TCF12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381556,918,090 - 57,291,310 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1556,918,623 - 57,299,281 (+)EnsemblGRCh38hg38GRCh38
GRCh371557,210,288 - 57,583,508 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361554,998,125 - 55,368,008 (+)NCBINCBI36Build 36hg18NCBI36
Build 341555,298,946 - 55,368,004NCBI
Celera1534,101,089 - 34,470,989 (+)NCBICelera
Cytogenetic Map15q21.3NCBI
HuRef1534,034,113 - 34,404,326 (+)NCBIHuRef
CHM1_11557,329,060 - 57,698,836 (+)NCBICHM1_1
T2T-CHM13v2.01554,721,353 - 55,094,637 (+)NCBIT2T-CHM13v2.0
Tcf12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2872,490,447 - 72,799,265 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl872,492,567 - 72,799,201 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx878,027,416 - 78,332,767 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0876,300,090 - 76,605,434 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0874,137,436 - 74,442,798 (-)NCBIRnor_WKY
Rnor_6.0878,343,634 - 78,657,738 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl878,345,754 - 78,655,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0874,423,476 - 74,735,375 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4876,311,327 - 76,498,091 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1876,330,380 - 76,517,143 (-)NCBI
Celera868,938,004 - 69,243,587 (+)NCBICelera
Cytogenetic Map8q24NCBI
Tcf12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545016,979,414 - 17,376,055 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545016,979,990 - 17,375,264 (-)NCBIChiLan1.0ChiLan1.0
TCF12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11554,200,383 - 54,570,440 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1554,202,862 - 54,570,440 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01535,885,421 - 36,257,632 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TCF12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13022,108,841 - 22,473,224 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3022,108,371 - 22,471,275 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3022,071,940 - 22,446,559 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03022,257,327 - 22,632,225 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3022,258,049 - 22,632,217 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13022,197,284 - 22,565,688 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03022,282,390 - 22,650,433 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03022,416,469 - 22,791,218 (+)NCBIUU_Cfam_GSD_1.0
Tcf12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640100,375,132 - 100,729,321 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647118,223,221 - 18,576,922 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCF12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1114,682,303 - 115,056,262 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11114,682,299 - 115,056,363 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21126,843,706 - 126,865,421 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCF12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12626,219,881 - 26,585,452 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2626,218,496 - 26,583,684 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048114,727,993 - 115,093,198 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcf12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478114,433,557 - 14,847,634 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5481
Count of miRNA genes:865
Interacting mature miRNAs:1144
Transcripts:ENSMUST00000034755, ENSMUST00000183404, ENSMUST00000183492, ENSMUST00000183594, ENSMUST00000183647, ENSMUST00000183784, ENSMUST00000183918, ENSMUST00000183992, ENSMUST00000184029, ENSMUST00000184072, ENSMUST00000184107, ENSMUST00000184196, ENSMUST00000184378, ENSMUST00000184416, ENSMUST00000184448, ENSMUST00000184523, ENSMUST00000184770, ENSMUST00000184783, ENSMUST00000184806, ENSMUST00000184867, ENSMUST00000185117
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96583105686577967Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse

Markers in Region
RH127049  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38972,012,413 - 72,012,615UniSTSGRCm38
MGSCv37971,860,220 - 71,860,422UniSTSGRCm37
Celera969,200,741 - 69,200,943UniSTS
Cytogenetic Map9DUniSTS
cM Map942.0UniSTS
Whitehead/MRC_RH9698.42UniSTS
UniSTS:236185  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38971,850,790 - 71,850,991UniSTSGRCm38
MGSCv37971,698,597 - 71,698,798UniSTSGRCm37
Celera969,046,008 - 69,046,513UniSTS
Celera969,046,312 - 69,046,513UniSTS
Cytogenetic Map9DUniSTS
cM Map942.0UniSTS
PMC133542P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38971,845,848 - 71,846,381UniSTSGRCm38
MGSCv37971,693,655 - 71,694,188UniSTSGRCm37
Celera969,041,074 - 69,041,607UniSTS
Cytogenetic Map9DUniSTS
cM Map942.0UniSTS
Tcf12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38971,846,237 - 71,846,415UniSTSGRCm38
MGSCv37971,694,044 - 71,694,222UniSTSGRCm37
Celera969,041,463 - 69,041,641UniSTS
Cytogenetic Map9DUniSTS
cM Map942.0UniSTS
Tcf12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9DUniSTS
Tcf12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9DUniSTS
Tcf12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9DUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001253862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001253863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001253864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001253865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC093483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ127642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY739497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ164494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M97635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M97636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U19863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X64840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034755   ⟹   ENSMUSP00000034755
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,751,550 - 72,019,103 (-)Ensembl
GRCm38.p6 Ensembl971,844,268 - 72,111,821 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183404   ⟹   ENSMUSP00000139365
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,749,970 - 72,019,129 (-)Ensembl
GRCm38.p6 Ensembl971,842,688 - 72,111,847 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183492   ⟹   ENSMUSP00000138939
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,791,025 - 72,019,054 (-)Ensembl
GRCm38.p6 Ensembl971,883,743 - 72,111,772 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183594   ⟹   ENSMUSP00000138952
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,792,497 - 72,019,074 (-)Ensembl
GRCm38.p6 Ensembl971,885,215 - 72,111,792 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183647   ⟹   ENSMUSP00000139139
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,790,404 - 71,907,756 (-)Ensembl
GRCm38.p6 Ensembl971,883,122 - 72,000,474 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183784
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,775,506 - 71,791,993 (-)Ensembl
GRCm38.p6 Ensembl971,868,224 - 71,884,711 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183918   ⟹   ENSMUSP00000138978
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,751,555 - 71,803,678 (-)Ensembl
GRCm38.p6 Ensembl971,844,273 - 71,896,396 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183992   ⟹   ENSMUSP00000139084
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,765,869 - 72,018,484 (-)Ensembl
GRCm38.p6 Ensembl971,858,587 - 72,111,202 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184029   ⟹   ENSMUSP00000138807
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,791,719 - 71,829,992 (-)Ensembl
GRCm38.p6 Ensembl971,884,437 - 71,922,710 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184072   ⟹   ENSMUSP00000139284
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,783,271 - 72,017,006 (-)Ensembl
GRCm38.p6 Ensembl971,875,989 - 72,109,724 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184107   ⟹   ENSMUSP00000139248
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,791,046 - 72,018,882 (-)Ensembl
GRCm38.p6 Ensembl971,883,764 - 72,111,600 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184196
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,849,727 - 72,019,129 (-)Ensembl
GRCm38.p6 Ensembl971,942,445 - 72,111,847 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184378   ⟹   ENSMUSP00000139268
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,783,271 - 71,803,267 (-)Ensembl
GRCm38.p6 Ensembl971,875,989 - 71,895,985 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184416   ⟹   ENSMUSP00000139008
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,790,014 - 71,907,758 (-)Ensembl
GRCm38.p6 Ensembl971,882,732 - 72,000,476 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184448   ⟹   ENSMUSP00000139334
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,757,173 - 71,803,371 (-)Ensembl
GRCm38.p6 Ensembl971,849,891 - 71,896,089 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184523   ⟹   ENSMUSP00000138832
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,757,176 - 72,019,094 (-)Ensembl
GRCm38.p6 Ensembl971,849,894 - 72,111,812 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184770
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,751,534 - 71,803,368 (-)Ensembl
GRCm38.p6 Ensembl971,844,252 - 71,896,086 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184783   ⟹   ENSMUSP00000139364
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,752,794 - 72,019,153 (-)Ensembl
GRCm38.p6 Ensembl971,845,512 - 72,111,871 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184806
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl972,013,421 - 72,017,763 (-)Ensembl
GRCm38.p6 Ensembl972,106,139 - 72,110,481 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184867   ⟹   ENSMUSP00000139233
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,751,559 - 72,019,089 (-)Ensembl
GRCm38.p6 Ensembl971,844,277 - 72,111,807 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185117   ⟹   ENSMUSP00000138925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl971,752,005 - 72,018,933 (-)Ensembl
GRCm38.p6 Ensembl971,844,723 - 72,111,651 (-)Ensembl
RefSeq Acc Id: NM_001253862   ⟹   NP_001240791
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,534 - 72,018,483 (-)NCBI
GRCm38971,844,252 - 72,111,201 (-)NCBI
Celera969,039,252 - 69,300,279 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001253863   ⟹   NP_001240792
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,534 - 71,803,378 (-)NCBI
GRCm38971,844,252 - 71,896,096 (-)NCBI
Celera969,039,252 - 69,300,279 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001253864   ⟹   NP_001240793
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,534 - 71,803,378 (-)NCBI
GRCm38971,844,252 - 71,896,096 (-)NCBI
Celera969,039,252 - 69,300,279 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001253865   ⟹   NP_001240794
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,534 - 72,019,101 (-)NCBI
GRCm38971,844,252 - 72,111,819 (-)ENTREZGENE
Celera969,039,252 - 69,300,279 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011544   ⟹   NP_035674
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,534 - 72,019,101 (-)NCBI
GRCm38971,844,252 - 72,111,819 (-)ENTREZGENE
MGSCv37971,692,059 - 71,959,626 (-)RGD
Celera969,039,252 - 69,300,279 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510994   ⟹   XP_006511057
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 72,018,858 (-)NCBI
GRCm38971,844,273 - 72,111,440 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510995   ⟹   XP_006511058
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 72,019,611 (-)NCBI
GRCm38971,844,273 - 72,111,893 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510996   ⟹   XP_006511059
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 72,019,611 (-)NCBI
GRCm38971,844,273 - 72,111,893 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510997   ⟹   XP_006511060
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 72,019,611 (-)NCBI
GRCm38971,844,273 - 72,111,893 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510998   ⟹   XP_006511061
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 72,019,611 (-)NCBI
GRCm38971,844,273 - 72,111,893 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510999   ⟹   XP_006511062
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 72,019,611 (-)NCBI
GRCm38971,844,273 - 72,111,893 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511000   ⟹   XP_006511063
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 72,019,611 (-)NCBI
GRCm38971,844,273 - 72,111,795 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511002   ⟹   XP_006511065
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 71,807,172 (-)NCBI
GRCm38971,844,273 - 71,899,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313270   ⟹   XP_017168759
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 72,019,611 (-)NCBI
GRCm38971,844,273 - 72,111,665 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244212   ⟹   XP_030100072
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 72,019,611 (-)NCBI
GRCm38971,844,273 - 72,111,665 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244213   ⟹   XP_030100073
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 71,807,172 (-)NCBI
GRCm38971,844,273 - 71,899,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244214   ⟹   XP_030100074
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 71,807,172 (-)NCBI
GRCm38971,844,273 - 71,899,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154817   ⟹   XP_036010710
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 71,807,172 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154818   ⟹   XP_036010711
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39971,751,555 - 72,019,611 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001240791 (Get FASTA)   NCBI Sequence Viewer  
  NP_001240792 (Get FASTA)   NCBI Sequence Viewer  
  NP_001240793 (Get FASTA)   NCBI Sequence Viewer  
  NP_001240794 (Get FASTA)   NCBI Sequence Viewer  
  NP_035674 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511057 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511058 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511059 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511060 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511061 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511062 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511063 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511065 (Get FASTA)   NCBI Sequence Viewer  
  XP_017168759 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100072 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100073 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100074 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010710 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010711 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH37097 (Get FASTA)   NCBI Sequence Viewer  
  BAC37263 (Get FASTA)   NCBI Sequence Viewer  
  BAE21953 (Get FASTA)   NCBI Sequence Viewer  
  BAE21989 (Get FASTA)   NCBI Sequence Viewer  
  BAE22510 (Get FASTA)   NCBI Sequence Viewer  
  BAE25324 (Get FASTA)   NCBI Sequence Viewer  
  BAE41376 (Get FASTA)   NCBI Sequence Viewer  
  CAA46052 (Get FASTA)   NCBI Sequence Viewer  
  EDL26234 (Get FASTA)   NCBI Sequence Viewer  
  EDL26235 (Get FASTA)   NCBI Sequence Viewer  
  EDL26236 (Get FASTA)   NCBI Sequence Viewer  
  EDL26237 (Get FASTA)   NCBI Sequence Viewer  
  Q61286 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_035674   ⟸   NM_011544
- Peptide Label: isoform 1
- UniProtKB: E9QPN4 (UniProtKB/Swiss-Prot),   Q61286 (UniProtKB/Swiss-Prot),   Q3TE72 (UniProtKB/TrEMBL),   Q3UZA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240794   ⟸   NM_001253865
- Peptide Label: isoform 5
- UniProtKB: Q61286 (UniProtKB/Swiss-Prot),   Q3UZA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240791   ⟸   NM_001253862
- Peptide Label: isoform 2
- UniProtKB: Q3UZ69 (UniProtKB/TrEMBL),   Q3UZA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240793   ⟸   NM_001253864
- Peptide Label: isoform 4
- UniProtKB: Q3UXQ3 (UniProtKB/TrEMBL),   Q3UZA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240792   ⟸   NM_001253863
- Peptide Label: isoform 3
- UniProtKB: Q3UXQ3 (UniProtKB/TrEMBL),   Q3UZA4 (UniProtKB/TrEMBL),   V9GX46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511057   ⟸   XM_006510994
- Peptide Label: isoform X1
- UniProtKB: E9QPN4 (UniProtKB/Swiss-Prot),   Q61286 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511065   ⟸   XM_006511002
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_006511061   ⟸   XM_006510998
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006511062   ⟸   XM_006510999
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006511060   ⟸   XM_006510997
- Peptide Label: isoform X4
- UniProtKB: Q61286 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511058   ⟸   XM_006510995
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006511059   ⟸   XM_006510996
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006511063   ⟸   XM_006511000
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017168759   ⟸   XM_017313270
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_030100072   ⟸   XM_030244212
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030100074   ⟸   XM_030244214
- Peptide Label: isoform X12
RefSeq Acc Id: XP_030100073   ⟸   XM_030244213
- Peptide Label: isoform X10
RefSeq Acc Id: ENSMUSP00000139284   ⟸   ENSMUST00000184072
RefSeq Acc Id: ENSMUSP00000138807   ⟸   ENSMUST00000184029
RefSeq Acc Id: ENSMUSP00000139248   ⟸   ENSMUST00000184107
RefSeq Acc Id: ENSMUSP00000139233   ⟸   ENSMUST00000184867
RefSeq Acc Id: ENSMUSP00000139008   ⟸   ENSMUST00000184416
RefSeq Acc Id: ENSMUSP00000139268   ⟸   ENSMUST00000184378
RefSeq Acc Id: ENSMUSP00000138832   ⟸   ENSMUST00000184523
RefSeq Acc Id: ENSMUSP00000139334   ⟸   ENSMUST00000184448
RefSeq Acc Id: ENSMUSP00000139364   ⟸   ENSMUST00000184783
RefSeq Acc Id: ENSMUSP00000139084   ⟸   ENSMUST00000183992
RefSeq Acc Id: ENSMUSP00000138978   ⟸   ENSMUST00000183918
RefSeq Acc Id: ENSMUSP00000138939   ⟸   ENSMUST00000183492
RefSeq Acc Id: ENSMUSP00000139139   ⟸   ENSMUST00000183647
RefSeq Acc Id: ENSMUSP00000138952   ⟸   ENSMUST00000183594
RefSeq Acc Id: ENSMUSP00000139365   ⟸   ENSMUST00000183404
RefSeq Acc Id: ENSMUSP00000034755   ⟸   ENSMUST00000034755
RefSeq Acc Id: ENSMUSP00000138925   ⟸   ENSMUST00000185117
RefSeq Acc Id: XP_036010711   ⟸   XM_036154818
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036010710   ⟸   XM_036154817
- Peptide Label: isoform X11
Protein Domains
bHLH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61286-F1-model_v2 AlphaFold Q61286 1-706 view protein structure

Promoters
RGD ID:6845235
Promoter ID:MM_KWN:58005
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   MEF_B6
Transcripts:UC009QPE.1,   UC009QPH.1,   UC009QPJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36971,743,816 - 71,744,427 (-)MPROMDB
RGD ID:8670124
Promoter ID:EPDNEW_M13092
Type:multiple initiation site
Name:Tcf12_2
Description:Mus musculus transcription factor 12 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13093  EPDNEW_M13094  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38971,896,086 - 71,896,146EPDNEW
RGD ID:6845238
Promoter ID:MM_KWN:58011
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000113549,   NM_011544,   UC009QPG.1,   UC009QPI.1,   UC009QPK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36971,958,906 - 71,960,012 (-)MPROMDB
RGD ID:8670126
Promoter ID:EPDNEW_M13093
Type:single initiation site
Name:Tcf12_3
Description:Mus musculus transcription factor 12 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13092  EPDNEW_M13094  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38971,996,305 - 71,996,365EPDNEW
RGD ID:8670128
Promoter ID:EPDNEW_M13094
Type:initiation region
Name:Tcf12_1
Description:Mus musculus transcription factor 12 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13092  EPDNEW_M13093  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38972,111,846 - 72,111,906EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101877 AgrOrtholog
Ensembl Genes ENSMUSG00000032228 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034755 ENTREZGENE
  ENSMUSP00000034755.7 UniProtKB/Swiss-Prot
  ENSMUSP00000138807.2 UniProtKB/TrEMBL
  ENSMUSP00000138832.2 UniProtKB/TrEMBL
  ENSMUSP00000138925.2 UniProtKB/Swiss-Prot
  ENSMUSP00000138939.2 UniProtKB/TrEMBL
  ENSMUSP00000138952.2 UniProtKB/TrEMBL
  ENSMUSP00000138978 ENTREZGENE
  ENSMUSP00000138978.2 UniProtKB/TrEMBL
  ENSMUSP00000139008.2 UniProtKB/TrEMBL
  ENSMUSP00000139084.2 UniProtKB/TrEMBL
  ENSMUSP00000139139.2 UniProtKB/TrEMBL
  ENSMUSP00000139233.2 UniProtKB/TrEMBL
  ENSMUSP00000139248.2 UniProtKB/TrEMBL
  ENSMUSP00000139268.2 UniProtKB/TrEMBL
  ENSMUSP00000139284.2 UniProtKB/TrEMBL
  ENSMUSP00000139334 ENTREZGENE
  ENSMUSP00000139334.2 UniProtKB/TrEMBL
  ENSMUSP00000139364.2 UniProtKB/Swiss-Prot
  ENSMUSP00000139365 ENTREZGENE
  ENSMUSP00000139365.2 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034755 ENTREZGENE
  ENSMUST00000034755.13 UniProtKB/Swiss-Prot
  ENSMUST00000183404 ENTREZGENE
  ENSMUST00000183404.8 UniProtKB/Swiss-Prot
  ENSMUST00000183492.8 UniProtKB/TrEMBL
  ENSMUST00000183594.2 UniProtKB/TrEMBL
  ENSMUST00000183647.8 UniProtKB/TrEMBL
  ENSMUST00000183918 ENTREZGENE
  ENSMUST00000183918.8 UniProtKB/TrEMBL
  ENSMUST00000183992.8 UniProtKB/TrEMBL
  ENSMUST00000184029.2 UniProtKB/TrEMBL
  ENSMUST00000184072.8 UniProtKB/TrEMBL
  ENSMUST00000184107.8 UniProtKB/TrEMBL
  ENSMUST00000184378.8 UniProtKB/TrEMBL
  ENSMUST00000184416.8 UniProtKB/TrEMBL
  ENSMUST00000184448 ENTREZGENE
  ENSMUST00000184448.8 UniProtKB/TrEMBL
  ENSMUST00000184523.8 UniProtKB/TrEMBL
  ENSMUST00000184783.8 UniProtKB/Swiss-Prot
  ENSMUST00000184867.8 UniProtKB/TrEMBL
  ENSMUST00000185117.8 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21406 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:101877 ENTREZGENE
NCBI Gene 21406 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR 12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tcf12 PhenoGen
PROSITE BHLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9QPN4 ENTREZGENE
  HTF4_MOUSE UniProtKB/Swiss-Prot
  Q3TE72 ENTREZGENE, UniProtKB/TrEMBL
  Q3UXQ3 ENTREZGENE, UniProtKB/TrEMBL
  Q3UZ69 ENTREZGENE, UniProtKB/TrEMBL
  Q3UZA4 ENTREZGENE, UniProtKB/TrEMBL
  Q61286 ENTREZGENE
  Q8BP24_MOUSE UniProtKB/TrEMBL
  Q8K1X3_MOUSE UniProtKB/TrEMBL
  V9GWS4_MOUSE UniProtKB/TrEMBL
  V9GWU2_MOUSE UniProtKB/TrEMBL
  V9GX18_MOUSE UniProtKB/TrEMBL
  V9GX29_MOUSE UniProtKB/TrEMBL
  V9GX46 ENTREZGENE, UniProtKB/TrEMBL
  V9GX66_MOUSE UniProtKB/TrEMBL
  V9GXC3_MOUSE UniProtKB/TrEMBL
  V9GXG5_MOUSE UniProtKB/TrEMBL
  V9GXM8_MOUSE UniProtKB/TrEMBL
  V9GXP0_MOUSE UniProtKB/TrEMBL
  V9GXQ6_MOUSE UniProtKB/TrEMBL
  V9GXR6_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9QPN4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Tcf12  transcription factor 12  A130037E08Rik  RIKEN cDNA A130037E08 gene  Data Merged 737654 PROVISIONAL