Fyn (Fyn proto-oncogene) - Rat Genome Database

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Gene: Fyn (Fyn proto-oncogene) Mus musculus
Analyze
Symbol: Fyn
Name: Fyn proto-oncogene
RGD ID: 731930
MGI Page MGI
Description: Enables several functions, including cytoskeletal protein binding activity; protein tyrosine kinase activity; and transmembrane transporter binding activity. Involved in several processes, including negative regulation of dendritic spine maintenance; positive regulation of protein targeting to membrane; and positive regulation of tyrosine phosphorylation of STAT protein. Acts upstream of or within several processes, including activated T cell proliferation; negative regulation of protein metabolic process; and nervous system development. Located in several cellular components, including actin filament; membrane raft; and postsynaptic density. Is active in Schaffer collateral - CA1 synapse. Is expressed in several structures, including alimentary system; central nervous system; cranial nerve; genitourinary system; and sensory organ. Used to study skin disease and skin squamous cell carcinoma. Human ortholog(s) of this gene implicated in Alzheimer's disease and schizophrenia. Orthologous to human FYN (FYN proto-oncogene, Src family tyrosine kinase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI448320; AW552119; MGC115870; p59-Fyn; proto-oncogene c-Fyn; proto-oncogene tyrosine-protein kinase Fyn; Src Kinase p59; tyrosine-protein kinase Fyn
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391039,245,735 - 39,441,377 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1039,244,851 - 39,441,377 (+)EnsemblGRCm39 Ensembl
GRCm381039,369,743 - 39,565,381 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1039,368,855 - 39,565,381 (+)EnsemblGRCm38mm10GRCm38
MGSCv371039,089,605 - 39,285,187 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361039,059,502 - 39,254,797 (+)NCBIMGSCv36mm8
Celera1040,254,667 - 40,450,960 (+)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1020.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(R,R,R)-alpha-tocopherol  (ISO)
(S)-nicotine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-arachidonoylglycerol  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-methylcholanthrene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
alachlor  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antigen  (EXP)
antimycin A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP,ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylparaben  (ISO)
caffeine  (EXP)
calcium dichloride  (ISO)
captan  (EXP)
carmustine  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cytarabine  (ISO)
D-gluconic acid  (ISO)
DDE  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dieldrin  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzacamene  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP,ISO)
etoposide  (EXP,ISO)
folpet  (EXP)
fulvestrant  (ISO)
gentamycin  (ISO)
glutathione  (ISO)
haloperidol  (EXP)
inulin  (EXP)
L-ascorbic acid  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
linuron  (ISO)
lithium chloride  (ISO)
LY294002  (EXP)
methamphetamine  (EXP)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
methylseleninic acid  (ISO)
mitomycin C  (ISO)
mitoxantrone  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-methyl-D-aspartic acid  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosodimethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nicotine  (ISO)
O-methyleugenol  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenylarsine oxide  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
piroxicam  (ISO)
ponatinib  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
prochloraz  (ISO)
procymidone  (ISO)
propanal  (ISO)
puerarin  (EXP,ISO)
resveratrol  (ISO)
rotenone  (ISO)
Salinomycin  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
Soman  (ISO)
succimer  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
tebufenpyrad  (ISO)
testosterone  (ISO)
titanium dioxide  (EXP)
tolonium chloride  (EXP)
topotecan  (ISO)
tremolite asbestos  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
Triptolide  (ISO)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activated T cell proliferation  (IMP)
adaptive immune response  (IEA)
cell differentiation  (IBA)
cell surface receptor signaling pathway  (IDA)
cellular response to amyloid-beta  (ISO)
cellular response to glycine  (ISO)
cellular response to growth factor stimulus  (ISO)
cellular response to hydrogen peroxide  (ISO)
cellular response to L-glutamate  (ISO)
cellular response to peptide hormone stimulus  (ISO)
cellular response to platelet-derived growth factor stimulus  (IDA)
cellular response to transforming growth factor beta stimulus  (IGI)
dendrite morphogenesis  (IMP)
detection of mechanical stimulus involved in sensory perception of pain  (IMP)
forebrain development  (IGI,IMP)
heart process  (IGI,ISO)
I-kappaB kinase/NF-kappaB signaling  (IGI)
immune system process  (IEA)
innate immune response  (IBA)
intracellular signal transduction  (ISO)
modulation of chemical synaptic transmission  (IDA,IMP)
myelination  (TAS)
negative regulation of dendritic spine maintenance  (IGI)
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand  (ISO)
negative regulation of gene expression  (IMP)
negative regulation of hydrogen peroxide biosynthetic process  (ISO)
negative regulation of neuron apoptotic process  (ISO)
negative regulation of protein catabolic process  (IMP)
negative regulation of protein ubiquitination  (IDA)
neuron migration  (IGI,IMP)
neuron projection development  (IGI)
obsolete negative regulation of oxidative stress-induced cell death  (ISO)
peptidyl-tyrosine phosphorylation  (IDA,IMP,ISO)
phosphorylation  (IEA)
positive regulation of cysteine-type endopeptidase activity  (ISO)
positive regulation of I-kappaB kinase/NF-kappaB signaling  (IGI)
positive regulation of neuron death  (IGI)
positive regulation of neuron projection development  (IGI)
positive regulation of phosphatidylinositol 3-kinase signaling  (ISO)
positive regulation of protein localization to nucleus  (IDA,IMP)
positive regulation of protein targeting to membrane  (IGI)
positive regulation of tyrosine phosphorylation of STAT protein  (IMP)
protein autophosphorylation  (IDA,ISO)
protein catabolic process  (IMP)
protein phosphorylation  (IBA,IMP)
protein ubiquitination  (IDA)
regulation of calcium ion import across plasma membrane  (IGI)
regulation of cell shape  (IDA)
regulation of glutamate receptor signaling pathway  (IGI)
regulation of peptidyl-tyrosine phosphorylation  (IGI)
response to amyloid-beta  (IGI)
response to ethanol  (IGI)
response to singlet oxygen  (ISO)
response to xenobiotic stimulus  (ISO)
T cell receptor signaling pathway  (IBA,ISO)
transmembrane receptor protein tyrosine kinase signaling pathway  (IBA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal alpha-beta intraepithelial T cell morphology  (IAGP)
abnormal B cell differentiation  (IAGP)
abnormal CD4-positive, alpha-beta T cell physiology  (IAGP)
abnormal chemokine level  (IAGP)
abnormal cytokine secretion  (IAGP)
abnormal dentate gyrus morphology  (IAGP)
abnormal ectoplasmic specialization morphology  (IAGP)
abnormal eosinophil physiology  (IAGP)
abnormal excitatory postsynaptic potential  (IAGP)
abnormal hippocampus layer morphology  (IAGP)
abnormal hippocampus morphology  (IAGP)
abnormal hippocampus pyramidal cell layer  (IAGP)
abnormal hippocampus pyramidal cell morphology  (IAGP)
abnormal hypothalamus morphology  (IAGP)
abnormal immune cell physiology  (IAGP)
abnormal interleukin secretion  (IAGP)
abnormal interleukin-4 secretion  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal locomotor circadian rhythm  (IAGP)
abnormal macrophage physiology  (IAGP)
abnormal maternal nurturing  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal myelination  (IAGP)
abnormal NK cell physiology  (IAGP)
abnormal NK T cell number  (IAGP)
abnormal nursing  (IAGP)
abnormal olfaction  (IAGP)
abnormal olfactory bulb morphology  (IAGP)
abnormal optic nerve morphology  (IAGP)
abnormal pro-B cell differentiation  (IAGP)
abnormal pup retrieval  (IAGP)
abnormal regulatory T cell physiology  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal renal tubule morphology  (IAGP)
abnormal seminiferous tubule morphology  (IAGP)
abnormal somatosensory cortex morphology  (IAGP)
abnormal spatial learning  (IAGP)
abnormal sperm capacitation  (IAGP)
abnormal sperm connecting piece morphology  (IAGP)
abnormal sperm head morphology  (IAGP)
abnormal sperm motility  (IAGP)
abnormal spermatogenesis  (IAGP)
abnormal spermiogenesis  (IAGP)
abnormal startle reflex  (IAGP)
abnormal stratification in cerebral cortex  (IAGP)
abnormal suckling behavior  (IAGP)
abnormal T cell activation  (IAGP)
abnormal T cell clonal deletion  (IAGP)
abnormal T cell differentiation  (IAGP)
abnormal T cell physiology  (IAGP)
abnormal T cell proliferation  (IAGP)
abnormal thymocyte activation  (IAGP)
absent CD4-positive, alpha-beta T cells  (IAGP)
absent CD8-positive, alpha-beta T cells  (IAGP)
absent T cells  (IAGP)
arrested B cell differentiation  (IAGP)
arrested T cell differentiation  (IAGP)
audiogenic seizures  (IAGP)
cortical renal glomerulopathies  (IAGP)
decreased B cell number  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased corpus callosum size  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased epididymis weight  (IAGP)
decreased fertilization frequency  (IAGP)
decreased gamma-delta intraepithelial T cell number  (IAGP)
decreased gamma-delta T cell number  (IAGP)
decreased IgE level  (IAGP)
decreased immature B cell number  (IAGP)
decreased interferon-gamma secretion  (IAGP)
decreased interleukin-2 secretion  (IAGP)
decreased pre-B cell number  (IAGP)
decreased regulatory T cell number  (IAGP)
decreased T cell number  (IAGP)
decreased T cell proliferation  (IAGP)
decreased testis weight  (IAGP)
decreased thymocyte number  (IAGP)
ectopic hippocampus pyramidal cells  (IAGP)
enhanced behavioral response to alcohol  (IAGP)
enhanced passive avoidance behavior  (IAGP)
enlarged lymph nodes  (IAGP)
enlarged spleen  (IAGP)
extramedullary hematopoiesis  (IAGP)
glomerulosclerosis  (IAGP)
impaired acrosome reaction  (IAGP)
impaired sperm penetration of zona pellucida  (IAGP)
increased dopamine level  (IAGP)
increased fear-related response  (IAGP)
increased hippocampus pyramidal cell number  (IAGP)
increased IgG2a level  (IAGP)
increased IgM level  (IAGP)
increased interleukin-5 secretion  (IAGP)
increased regulatory T cell number  (IAGP)
increased sensitivity to xenobiotic induced morbidity/mortality  (IAGP)
increased serotonin level  (IAGP)
increased spleen white pulp amount  (IAGP)
increased susceptibility to experimental autoimmune uveoretinitis  (IAGP)
increased susceptibility to type I hypersensitivity reaction  (IAGP)
increased T cell number  (IAGP)
increased tumor necrosis factor secretion  (IAGP)
increased urine protein level  (IAGP)
myeloid hyperplasia  (IAGP)
oligozoospermia  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, complete penetrance  (IEA)
prolonged circadian behavior period  (IAGP)
reduced female fertility  (IAGP)
reduced long term potentiation  (IAGP)
ruffled hair  (IAGP)
small kidney  (IAGP)
small seminiferous tubules  (IAGP)
teratozoospermia  (IAGP)
thymus cortex atrophy  (IAGP)
thymus hypoplasia  (IAGP)
tonic seizures  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Prostaglandin E2 modulation of p59fyn tyrosine kinase in T lymphocytes during sepsis. Choudhry MA, etal., J Immunol. 1998 Jan 15;160(2):929-35.
2. Role of NFAT and AP-1 in PGE2-mediated T cell suppression in burn injury. Choudhry MA, etal., Shock. 2002 Sep;18(3):212-6.
3. Four novel members of the connexin family of gap junction proteins. Molecular cloning, expression, and chromosome mapping. Haefliger JA, etal., J Biol Chem 1992 Jan 25;267(3):2057-64.
4. Altered p59Fyn kinase expression accompanies disease progression in Alzheimer's disease: implications for its functional role. Ho GJ, etal., Neurobiol Aging 2005 May;26(5):625-35.
5. Vascular endothelial growth factor receptor-2: structure, function, intracellular signalling and therapeutic inhibition. Holmes K, etal., Cell Signal. 2007 Oct;19(10):2003-12. Epub 2007 Jun 12.
6. Phosphorylation of tau by fyn: implications for Alzheimer's disease. Lee G, etal., J Neurosci 2004 Mar 3;24(9):2304-12.
7. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
8. MGDs mouse GO annotations MGD data from the GO Consortium
9. MGD IEA MGD IEA
10. Expression of Fyn, a non-receptor tyrosine kinase in prefrontal cortex from patients with schizophrenia and its correlation with clinical onset. Ohnuma T, etal., Brain Res Mol Brain Res 2003 Apr 10;112(1-2):90-4.
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
14. PKC-interacting proteins: from function to pharmacology. Poole AW, etal., Trends Pharmacol Sci. 2004 Oct;25(10):528-35.
15. Mouse MP Annotation Import Pipeline RGD automated import pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Reelin and brain development. Tissir F and Goffinet AM, Nat Rev Neurosci. 2003 Jun;4(6):496-505.
19. Kainate-induced seizures alter protein composition and N-methyl-D-aspartate receptor function of rat forebrain postsynaptic densities. Wyneken U, etal., Neuroscience. 2001;102(1):65-74.
20. A role for Fyn tyrosine kinase in the suckling behaviour of neonatal mice. Yagi T, etal., Nature 1993 Dec 23-30;366(6457):742-5.
Additional References at PubMed
PMID:1337939   PMID:1361685   PMID:1387588   PMID:1409582   PMID:1427822   PMID:1516132   PMID:1975791   PMID:2015626   PMID:2404338   PMID:2488273   PMID:3099169   PMID:7493751  
PMID:7499280   PMID:7509042   PMID:7536925   PMID:7544314   PMID:7557381   PMID:7617039   PMID:7650487   PMID:7705639   PMID:7723633   PMID:7730365   PMID:7799925   PMID:7877449  
PMID:7884321   PMID:7916323   PMID:7958873   PMID:7962063   PMID:7980442   PMID:8007959   PMID:8034026   PMID:8058305   PMID:8175795   PMID:8196616   PMID:8226859   PMID:8235598  
PMID:8247536   PMID:8402898   PMID:8413237   PMID:8441403   PMID:8535092   PMID:8551236   PMID:8562954   PMID:8570184   PMID:8605874   PMID:8631859   PMID:8635998   PMID:8641568  
PMID:8643689   PMID:8655574   PMID:8700547   PMID:8738145   PMID:8812055   PMID:8861907   PMID:8864276   PMID:8889548   PMID:8904782   PMID:8934569   PMID:8934570   PMID:8943574  
PMID:8981455   PMID:8983085   PMID:9009273   PMID:9045930   PMID:9062339   PMID:9079653   PMID:9114065   PMID:9115297   PMID:9151674   PMID:9177270   PMID:9185665   PMID:9201723  
PMID:9210408   PMID:9276618   PMID:9278347   PMID:9294143   PMID:9294206   PMID:9315092   PMID:9381182   PMID:9396778   PMID:9425184   PMID:9507006   PMID:9535845   PMID:9605142  
PMID:9653087   PMID:9655502   PMID:9658338   PMID:9712716   PMID:9774338   PMID:9890970   PMID:9892651   PMID:9895129   PMID:9973382   PMID:9987012   PMID:10051318   PMID:10077576  
PMID:10087297   PMID:10228160   PMID:10349636   PMID:10453000   PMID:10464165   PMID:10489260   PMID:10510341   PMID:10523617   PMID:10557075   PMID:10575223   PMID:10612399   PMID:10635317  
PMID:10675790   PMID:10684862   PMID:10713104   PMID:10739664   PMID:10802341   PMID:10829070   PMID:10844001   PMID:10869499   PMID:10872802   PMID:10922068   PMID:10935514   PMID:11005864  
PMID:11007902   PMID:11024032   PMID:11027535   PMID:11034371   PMID:11042159   PMID:11076861   PMID:11093170   PMID:11106751   PMID:11110698   PMID:11114734   PMID:11130076   PMID:11160194  
PMID:11166177   PMID:11175854   PMID:11180952   PMID:11217851   PMID:11245687   PMID:11287076   PMID:11306441   PMID:11312300   PMID:11423094   PMID:11468287   PMID:11477403   PMID:11489976  
PMID:11676481   PMID:11707774   PMID:11711534   PMID:11751285   PMID:11826099   PMID:11834300   PMID:11870621   PMID:12077322   PMID:12089510   PMID:12218089   PMID:12218114   PMID:12239221  
PMID:12359721   PMID:12372285   PMID:12374739   PMID:12399115   PMID:12466851   PMID:12471123   PMID:12477932   PMID:12526739   PMID:12526740   PMID:12538589   PMID:12545173   PMID:12545174  
PMID:12563261   PMID:12668668   PMID:12681493   PMID:12732664   PMID:12808452   PMID:12921535   PMID:13129922   PMID:13129934   PMID:14559149   PMID:14610273   PMID:14645715   PMID:14651920  
PMID:14681479   PMID:14685278   PMID:14707117   PMID:14757743   PMID:14761972   PMID:15034040   PMID:15049519   PMID:15073522   PMID:15102471   PMID:15128794   PMID:15140940   PMID:15154672  
PMID:15210764   PMID:15220932   PMID:15240808   PMID:15297464   PMID:15465914   PMID:15477350   PMID:15485773   PMID:15486073   PMID:15489334   PMID:15494732   PMID:15494734   PMID:15519685  
PMID:15528192   PMID:15537652   PMID:15539155   PMID:15539156   PMID:15542585   PMID:15548669   PMID:15549774   PMID:15623578   PMID:15634346   PMID:15711562   PMID:15713745   PMID:15716419  
PMID:15735648   PMID:15738056   PMID:15782199   PMID:15813945   PMID:15814670   PMID:15851519   PMID:15902435   PMID:15998796   PMID:15998803   PMID:16101815   PMID:16115884   PMID:16141072  
PMID:16141073   PMID:16162939   PMID:16190898   PMID:16262245   PMID:16272308   PMID:16301670   PMID:16316995   PMID:16337776   PMID:16339032   PMID:16339530   PMID:16407246   PMID:16425036  
PMID:16427614   PMID:16438943   PMID:16442778   PMID:16456001   PMID:16529723   PMID:16540575   PMID:16547257   PMID:16585062   PMID:16602821   PMID:16628251   PMID:16687575   PMID:16709819  
PMID:16723512   PMID:16751367   PMID:16754717   PMID:16765915   PMID:16777849   PMID:16841086   PMID:16847311   PMID:16859680   PMID:16880206   PMID:16882656   PMID:16899217   PMID:16908977  
PMID:16966330   PMID:16966372   PMID:16979591   PMID:17045972   PMID:17046829   PMID:17202343   PMID:17210649   PMID:17213284   PMID:17241158   PMID:17277164   PMID:17290413   PMID:17392475  
PMID:17394141   PMID:17449027   PMID:17460065   PMID:17475794   PMID:17488639   PMID:17521824   PMID:17579091   PMID:17599905   PMID:17623670   PMID:17623777   PMID:17675483   PMID:17845201  
PMID:17875741   PMID:17878361   PMID:17923684   PMID:18031696   PMID:18046458   PMID:18089558   PMID:18095272   PMID:18096814   PMID:18194650   PMID:18255094   PMID:18301737   PMID:18339867  
PMID:18354028   PMID:18403215   PMID:18430780   PMID:18442792   PMID:18482989   PMID:18490510   PMID:18499741   PMID:18550847   PMID:18559949   PMID:18579586   PMID:18632659   PMID:18636972  
PMID:18647647   PMID:18660530   PMID:18684920   PMID:18691323   PMID:18832694   PMID:18854310   PMID:18922801   PMID:18948260   PMID:19000718   PMID:19016778   PMID:19118543   PMID:19141671  
PMID:19294646   PMID:19304944   PMID:19362019   PMID:19363790   PMID:19403835   PMID:19420001   PMID:19439358   PMID:19587372   PMID:19668367   PMID:19734451   PMID:19776009   PMID:19776266  
PMID:19812040   PMID:19888448   PMID:19900187   PMID:19904769   PMID:19917692   PMID:19917775   PMID:19956733   PMID:20004975   PMID:20038804   PMID:20043875   PMID:20080640   PMID:20101614  
PMID:20126650   PMID:20142099   PMID:20176789   PMID:20200355   PMID:20233604   PMID:20304029   PMID:20335178   PMID:20346773   PMID:20372074   PMID:20398064   PMID:20495068   PMID:20506281  
PMID:20544909   PMID:20571036   PMID:20591331   PMID:20606012   PMID:20655099   PMID:20668219   PMID:20685990   PMID:20717919   PMID:20814235   PMID:20841362   PMID:20850416   PMID:20978343  
PMID:21054385   PMID:21088116   PMID:21097520   PMID:21098033   PMID:21228179   PMID:21267068   PMID:21339332   PMID:21427288   PMID:21464326   PMID:21534960   PMID:21592972   PMID:21630272  
PMID:21653832   PMID:21677750   PMID:21692989   PMID:21705469   PMID:21741124   PMID:21757751   PMID:21829547   PMID:21871204   PMID:21872217   PMID:21873635   PMID:21881001   PMID:21915273  
PMID:21918125   PMID:21946561   PMID:22057277   PMID:22189847   PMID:22386537   PMID:22387224   PMID:22393150   PMID:22437915   PMID:22450804   PMID:22539787   PMID:22564682   PMID:22663768  
PMID:22683124   PMID:22685302   PMID:22745922   PMID:22794259   PMID:22820466   PMID:22971575   PMID:23012656   PMID:23127881   PMID:23169819   PMID:23284724   PMID:23321073   PMID:23427257  
PMID:23430111   PMID:23438599   PMID:23593269   PMID:23602477   PMID:23616926   PMID:23967147   PMID:24036998   PMID:24045941   PMID:24210661   PMID:24312371   PMID:24312422   PMID:24399295  
PMID:24440149   PMID:24627473   PMID:24788409   PMID:24912779   PMID:24952961   PMID:25053806   PMID:25080486   PMID:25106729   PMID:25157091   PMID:25157176   PMID:25251774   PMID:25340851  
PMID:25354453   PMID:25417160   PMID:25558816   PMID:25877924   PMID:25951993   PMID:25967238   PMID:26157004   PMID:26235615   PMID:26291522   PMID:26365631   PMID:26449489   PMID:26459603  
PMID:26552706   PMID:26686094   PMID:26801084   PMID:26808221   PMID:26881253   PMID:26892111   PMID:26901312   PMID:26989177   PMID:27146985   PMID:27183589   PMID:27457929   PMID:27469439  
PMID:27474268   PMID:27525436   PMID:27616741   PMID:27859601   PMID:27913425   PMID:28096359   PMID:28363782   PMID:28368000   PMID:28440917   PMID:28533542   PMID:28539383   PMID:28586109  
PMID:28598420   PMID:28637841   PMID:28811476   PMID:28818835   PMID:28822039   PMID:28840468   PMID:28864542   PMID:29180007   PMID:29197620   PMID:29353218   PMID:29361558   PMID:29661967  
PMID:29974666   PMID:30252956   PMID:30658076   PMID:31036561   PMID:31237563   PMID:31452242   PMID:31461442   PMID:31534047   PMID:31609430   PMID:31757864   PMID:31924792   PMID:31950181  
PMID:31994829   PMID:32290105   PMID:32565338   PMID:32665013   PMID:32814048   PMID:32857879   PMID:32862025   PMID:32863204   PMID:32873638   PMID:33363455   PMID:33380425   PMID:33449368  
PMID:33995031   PMID:34105991   PMID:35353146   PMID:35710078   PMID:36016954  


Genomics

Comparative Map Data
Fyn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391039,245,735 - 39,441,377 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1039,244,851 - 39,441,377 (+)EnsemblGRCm39 Ensembl
GRCm381039,369,743 - 39,565,381 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1039,368,855 - 39,565,381 (+)EnsemblGRCm38mm10GRCm38
MGSCv371039,089,605 - 39,285,187 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361039,059,502 - 39,254,797 (+)NCBIMGSCv36mm8
Celera1040,254,667 - 40,450,960 (+)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1020.51NCBI
FYN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386111,660,332 - 111,873,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6111,660,332 - 111,873,452 (-)EnsemblGRCh38hg38GRCh38
GRCh376111,981,535 - 112,194,655 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366112,089,178 - 112,301,320 (-)NCBINCBI36Build 36hg18NCBI36
Build 346112,089,179 - 112,186,978NCBI
Celera6112,729,071 - 112,941,209 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6109,554,123 - 109,767,060 (-)NCBIHuRef
CHM1_16112,244,349 - 112,457,405 (-)NCBICHM1_1
T2T-CHM13v2.06112,843,350 - 113,056,537 (-)NCBIT2T-CHM13v2.0
Fyn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22042,767,733 - 42,960,903 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2042,766,369 - 42,959,911 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2044,517,354 - 44,708,655 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02044,176,580 - 44,367,880 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02044,909,156 - 45,110,016 (+)NCBIRnor_WKY
Rnor_6.02044,436,354 - 44,630,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2044,436,403 - 44,630,317 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02046,160,734 - 46,353,456 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42043,501,853 - 43,695,567 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12043,524,863 - 43,718,578 (+)NCBI
Celera2043,482,980 - 43,675,123 (+)NCBICelera
Cytogenetic Map20q12NCBI
Fyn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541136,401,842 - 36,512,054 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541136,403,156 - 36,597,660 (-)NCBIChiLan1.0ChiLan1.0
FYN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan16129,561,361 - 129,775,239 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06109,469,750 - 109,684,086 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16113,545,944 - 113,732,893 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6113,545,944 - 113,604,451 (-)Ensemblpanpan1.1panPan2
FYN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11268,105,060 - 68,316,630 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1268,075,184 - 68,316,541 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1267,924,675 - 68,136,151 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01268,986,784 - 69,198,525 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1268,987,778 - 69,174,188 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11268,338,226 - 68,549,311 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01268,184,783 - 68,396,306 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01268,510,644 - 68,722,405 (-)NCBIUU_Cfam_GSD_1.0
Fyn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946103,155,533 - 103,356,140 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936679387,387 - 443,880 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936679388,500 - 588,518 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FYN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl177,585,439 - 77,810,581 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1177,584,675 - 77,810,605 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,249,062 - 87,253,260 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2187,146,809 - 87,191,215 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1p13NCBI
FYN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11361,988,265 - 62,218,756 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1362,159,874 - 62,219,672 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604034,319,593 - 34,528,593 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fyn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624933389,627 - 456,520 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624933248,298 - 456,933 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fyn
6934 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4607
Count of miRNA genes:712
Interacting mature miRNAs:909
Transcripts:ENSMUST00000063091, ENSMUST00000099967, ENSMUST00000123205, ENSMUST00000126486, ENSMUST00000135242, ENSMUST00000136659, ENSMUST00000146287, ENSMUST00000148152, ENSMUST00000157009
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
10755518Chol16_mcholesterol 16 (mouse)101891504352915043Mouse
1302160Mbis2_mMycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)Not determined102028318556031223Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102159119268091639Mouse
26884394Humsd3_mhumerus midshaft diameter 3, 10 week (mouse)102237589951076096Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
4142209Psrs1_mpsoriasis susceptibility 1 (mouse)Not determined102689026446720483Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102972040363720483Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103097449964974630Mouse
1357558Bmch4_mbone mechanical trait 4 (mouse)Not determined103157713665577284Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103377599670835830Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse

Markers in Region
AW552119  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381039,564,883 - 39,564,977UniSTSGRCm38
MGSCv371039,284,689 - 39,284,783UniSTSGRCm37
Celera1040,450,462 - 40,450,556UniSTS
Cytogenetic Map10B1UniSTS
cM Map1025.0UniSTS
18.MMHAP85FRF9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381039,421,139 - 39,421,304UniSTSGRCm38
MGSCv371039,140,945 - 39,141,110UniSTSGRCm37
Celera1040,306,068 - 40,306,233UniSTS
Cytogenetic Map10B1UniSTS
cM Map1025.0UniSTS
AI448320  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381039,565,003 - 39,565,113UniSTSGRCm38
MGSCv371039,284,809 - 39,284,919UniSTSGRCm37
Celera1040,450,582 - 40,450,692UniSTS
Cytogenetic Map10B1UniSTS
cM Map1025.0UniSTS
Fyn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B1UniSTS
cM Map1025.0UniSTS
PMC317175P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381039,512,557 - 39,512,805UniSTSGRCm38
MGSCv371039,232,363 - 39,232,611UniSTSGRCm37
Celera1040,398,118 - 40,398,366UniSTS
Cytogenetic Map10B1UniSTS
cM Map1025.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001122892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001122893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE952821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF662030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ179147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ714273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U70324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000063091   ⟹   ENSMUSP00000057707
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1039,245,760 - 39,441,377 (+)Ensembl
GRCm38.p6 Ensembl1039,369,764 - 39,565,381 (+)Ensembl
RefSeq Acc Id: ENSMUST00000099967   ⟹   ENSMUSP00000097547
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1039,245,794 - 39,441,368 (+)Ensembl
GRCm38.p6 Ensembl1039,369,798 - 39,565,372 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123205
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1039,409,266 - 39,427,420 (+)Ensembl
GRCm38.p6 Ensembl1039,533,270 - 39,551,424 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126486   ⟹   ENSMUSP00000115233
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1039,245,799 - 39,440,419 (+)Ensembl
GRCm38.p6 Ensembl1039,369,803 - 39,564,423 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135242   ⟹   ENSMUSP00000117111
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1039,330,801 - 39,440,351 (+)Ensembl
GRCm38.p6 Ensembl1039,454,805 - 39,564,355 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136659   ⟹   ENSMUSP00000118131
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1039,387,735 - 39,440,418 (+)Ensembl
GRCm38.p6 Ensembl1039,511,739 - 39,564,422 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146287   ⟹   ENSMUSP00000114188
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1039,330,911 - 39,440,351 (+)Ensembl
GRCm38.p6 Ensembl1039,454,915 - 39,564,355 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148152   ⟹   ENSMUSP00000123445
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1039,244,851 - 39,391,664 (+)Ensembl
GRCm38.p6 Ensembl1039,368,855 - 39,515,668 (+)Ensembl
RefSeq Acc Id: ENSMUST00000157009   ⟹   ENSMUSP00000117837
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1039,296,005 - 39,387,855 (+)Ensembl
GRCm38.p6 Ensembl1039,420,009 - 39,511,859 (+)Ensembl
RefSeq Acc Id: NM_001122892   ⟹   NP_001116364
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,795 - 39,441,377 (+)NCBI
GRCm381039,369,799 - 39,565,381 (+)NCBI
MGSCv371039,089,605 - 39,285,187 (+)RGD
Celera1040,254,667 - 40,450,960 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001122893   ⟹   NP_001116365
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,795 - 39,441,377 (+)NCBI
GRCm381039,369,799 - 39,565,381 (+)NCBI
MGSCv371039,089,605 - 39,285,187 (+)RGD
Celera1040,254,667 - 40,450,960 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_008054   ⟹   NP_032080
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,795 - 39,441,377 (+)NCBI
GRCm381039,369,799 - 39,565,381 (+)NCBI
MGSCv371039,089,605 - 39,285,187 (+)RGD
Celera1040,254,667 - 40,450,960 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006512539   ⟹   XP_006512602
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,290,577 - 39,441,157 (+)NCBI
GRCm381039,417,101 - 39,565,161 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512540   ⟹   XP_006512603
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,750 - 39,441,157 (+)NCBI
GRCm381039,369,743 - 39,565,161 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011243117   ⟹   XP_011241419
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,750 - 39,441,157 (+)NCBI
GRCm381039,369,743 - 39,565,161 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244881   ⟹   XP_030100741
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,290,577 - 39,441,157 (+)NCBI
GRCm381039,417,101 - 39,565,161 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155603   ⟹   XP_036011496
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,750 - 39,441,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155604   ⟹   XP_036011497
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,247,390 - 39,441,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155605   ⟹   XP_036011498
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,327,522 - 39,441,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155606   ⟹   XP_036011499
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,750 - 39,441,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155607   ⟹   XP_036011500
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,750 - 39,441,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155608   ⟹   XP_036011501
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,247,390 - 39,441,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155609   ⟹   XP_036011502
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,247,378 - 39,441,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155610   ⟹   XP_036011503
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,750 - 39,441,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155611   ⟹   XP_036011504
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,327,488 - 39,441,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155612   ⟹   XP_036011505
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,750 - 39,441,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155613   ⟹   XP_036011506
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,750 - 39,441,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155614   ⟹   XP_036011507
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391039,245,735 - 39,441,157 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001116364 (Get FASTA)   NCBI Sequence Viewer  
  NP_001116365 (Get FASTA)   NCBI Sequence Viewer  
  NP_032080 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512602 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512603 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241419 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100741 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011496 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011497 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011498 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011499 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011500 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011501 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011502 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011503 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011504 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011505 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011506 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011507 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37644 (Get FASTA)   NCBI Sequence Viewer  
  AAB09568 (Get FASTA)   NCBI Sequence Viewer  
  AAH32149 (Get FASTA)   NCBI Sequence Viewer  
  AAH92217 (Get FASTA)   NCBI Sequence Viewer  
  BAE33766 (Get FASTA)   NCBI Sequence Viewer  
  BAE42585 (Get FASTA)   NCBI Sequence Viewer  
  EDL04921 (Get FASTA)   NCBI Sequence Viewer  
  EDL04922 (Get FASTA)   NCBI Sequence Viewer  
  EDL04923 (Get FASTA)   NCBI Sequence Viewer  
  EDL04924 (Get FASTA)   NCBI Sequence Viewer  
  P39688 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_032080   ⟸   NM_008054
- Peptide Label: isoform b
- UniProtKB: P39688 (UniProtKB/Swiss-Prot),   A0A6P5QI23 (UniProtKB/TrEMBL),   A0A8C6G707 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001116364   ⟸   NM_001122892
- Peptide Label: isoform b
- UniProtKB: P39688 (UniProtKB/Swiss-Prot),   A0A6P5QI23 (UniProtKB/TrEMBL),   A0A8C6G707 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001116365   ⟸   NM_001122893
- Peptide Label: isoform a
- UniProtKB: Q8K2A3 (UniProtKB/Swiss-Prot),   P39688 (UniProtKB/Swiss-Prot),   A0A6P5QGG6 (UniProtKB/TrEMBL),   A0A8C6G6C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512603   ⟸   XM_006512540
- Peptide Label: isoform X3
- UniProtKB: Q8K2A3 (UniProtKB/Swiss-Prot),   P39688 (UniProtKB/Swiss-Prot),   A0A6P5QGG6 (UniProtKB/TrEMBL),   A0A8C6G6C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512602   ⟸   XM_006512539
- Peptide Label: isoform X3
- UniProtKB: Q8K2A3 (UniProtKB/Swiss-Prot),   P39688 (UniProtKB/Swiss-Prot),   A0A6P5QGG6 (UniProtKB/TrEMBL),   A0A8C6G6C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241419   ⟸   XM_011243117
- Peptide Label: isoform X3
- UniProtKB: Q8K2A3 (UniProtKB/Swiss-Prot),   P39688 (UniProtKB/Swiss-Prot),   A0A6P5QGG6 (UniProtKB/TrEMBL),   A0A8C6G6C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030100741   ⟸   XM_030244881
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000097547   ⟸   ENSMUST00000099967
RefSeq Acc Id: ENSMUSP00000115233   ⟸   ENSMUST00000126486
RefSeq Acc Id: ENSMUSP00000114188   ⟸   ENSMUST00000146287
RefSeq Acc Id: ENSMUSP00000117111   ⟸   ENSMUST00000135242
RefSeq Acc Id: ENSMUSP00000123445   ⟸   ENSMUST00000148152
RefSeq Acc Id: ENSMUSP00000117837   ⟸   ENSMUST00000157009
RefSeq Acc Id: ENSMUSP00000057707   ⟸   ENSMUST00000063091
RefSeq Acc Id: ENSMUSP00000118131   ⟸   ENSMUST00000136659
RefSeq Acc Id: XP_036011507   ⟸   XM_036155614
- Peptide Label: isoform X6
- UniProtKB: A0A8C6G637 (UniProtKB/TrEMBL),   D3YZ57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036011500   ⟸   XM_036155607
- Peptide Label: isoform X3
- UniProtKB: Q8K2A3 (UniProtKB/Swiss-Prot),   A0A6P5QGG6 (UniProtKB/TrEMBL),   A0A8C6G6C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036011503   ⟸   XM_036155610
- Peptide Label: isoform X4
- UniProtKB: A0A6P5QI23 (UniProtKB/TrEMBL),   A0A8C6G707 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036011496   ⟸   XM_036155603
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036011499   ⟸   XM_036155606
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036011506   ⟸   XM_036155613
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036011505   ⟸   XM_036155612
- Peptide Label: isoform X4
- UniProtKB: A0A6P5QI23 (UniProtKB/TrEMBL),   A0A8C6G707 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036011502   ⟸   XM_036155609
- Peptide Label: isoform X3
- UniProtKB: Q8K2A3 (UniProtKB/Swiss-Prot),   A0A6P5QGG6 (UniProtKB/TrEMBL),   A0A8C6G6C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036011497   ⟸   XM_036155604
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036011501   ⟸   XM_036155608
- Peptide Label: isoform X3
- UniProtKB: Q8K2A3 (UniProtKB/Swiss-Prot),   A0A6P5QGG6 (UniProtKB/TrEMBL),   A0A8C6G6C0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036011504   ⟸   XM_036155611
- Peptide Label: isoform X4
- UniProtKB: A0A6P5QI23 (UniProtKB/TrEMBL),   A0A8C6G707 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036011498   ⟸   XM_036155605
- Peptide Label: isoform X1
Protein Domains
Protein kinase   SH2   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P39688-F1-model_v2 AlphaFold P39688 1-537 view protein structure

Promoters
RGD ID:6819509
Promoter ID:MM_KWN:3926
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:LINCRNA_103,   NM_001122892,   OTTMUST00000086386,   OTTMUST00000086387,   UC007EVZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361039,089,279 - 39,089,779 (-)MPROMDB
RGD ID:6819301
Promoter ID:MM_KWN:3930
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain
Transcripts:OTTMUST00000086393
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361039,230,561 - 39,231,777 (+)MPROMDB
RGD ID:6819299
Promoter ID:MM_KWN:3931
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000086394
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361039,252,026 - 39,252,526 (+)MPROMDB
RGD ID:8671808
Promoter ID:EPDNEW_M13935
Type:initiation region
Name:Fyn_1
Description:Mus musculus Fyn proto-oncogene , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13936  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381039,369,796 - 39,369,856EPDNEW
RGD ID:8671812
Promoter ID:EPDNEW_M13936
Type:single initiation site
Name:Fyn_2
Description:Mus musculus Fyn proto-oncogene , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13935  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381039,462,934 - 39,462,994EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95602 AgrOrtholog
Ensembl Genes ENSMUSG00000019843 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000057707 ENTREZGENE
  ENSMUSP00000057707.7 UniProtKB/Swiss-Prot
  ENSMUSP00000097547 ENTREZGENE
  ENSMUSP00000097547.4 UniProtKB/Swiss-Prot
  ENSMUSP00000114188.2 UniProtKB/Swiss-Prot
  ENSMUSP00000115233 ENTREZGENE
  ENSMUSP00000115233.2 UniProtKB/Swiss-Prot
  ENSMUSP00000117111 ENTREZGENE
  ENSMUSP00000117111.2 UniProtKB/Swiss-Prot
  ENSMUSP00000117837.2 UniProtKB/TrEMBL
  ENSMUSP00000118131 ENTREZGENE
  ENSMUSP00000118131.2 UniProtKB/TrEMBL
  ENSMUSP00000123445.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000063091 ENTREZGENE
  ENSMUST00000063091.13 UniProtKB/Swiss-Prot
  ENSMUST00000099967 ENTREZGENE
  ENSMUST00000099967.10 UniProtKB/Swiss-Prot
  ENSMUST00000126486 ENTREZGENE
  ENSMUST00000126486.8 UniProtKB/Swiss-Prot
  ENSMUST00000135242 ENTREZGENE
  ENSMUST00000135242.8 UniProtKB/Swiss-Prot
  ENSMUST00000136659 ENTREZGENE
  ENSMUST00000136659.2 UniProtKB/TrEMBL
  ENSMUST00000146287.8 UniProtKB/Swiss-Prot
  ENSMUST00000148152.8 UniProtKB/TrEMBL
  ENSMUST00000157009.8 UniProtKB/TrEMBL
Gene3D-CATH 3.30.505.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Fyn/Yrk_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14360 UniProtKB/Swiss-Prot
MGD MGI:95602 ENTREZGENE
NCBI Gene 14360 ENTREZGENE
PANTHER TYROSINE-PROTEIN KINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYROSINE-PROTEIN KINASE FYN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pkinase_Tyr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fyn PhenoGen
PRINTS SH2DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYRKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TyrKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55550 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A6P5QGG6 ENTREZGENE
  A0A6P5QI23 ENTREZGENE
  A0A8C6G637 ENTREZGENE
  A0A8C6G6C0 ENTREZGENE
  A0A8C6G707 ENTREZGENE
  D3YVZ0_MOUSE UniProtKB/TrEMBL
  D3YZ57 ENTREZGENE, UniProtKB/TrEMBL
  D3YZA2_MOUSE UniProtKB/TrEMBL
  FYN_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8K2A3 ENTREZGENE
UniProt Secondary Q3TAT3 UniProtKB/Swiss-Prot
  Q3U0T5 UniProtKB/Swiss-Prot
  Q8K2A3 UniProtKB/Swiss-Prot