Atp6v0c (ATPase, H+ transporting, lysosomal V0 subunit C) - Rat Genome Database

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Gene: Atp6v0c (ATPase, H+ transporting, lysosomal V0 subunit C) Mus musculus
Analyze
Symbol: Atp6v0c
Name: ATPase, H+ transporting, lysosomal V0 subunit C
RGD ID: 731893
MGI Page MGI
Description: Predicted to enable P-type proton-exporting transporter activity and ubiquitin protein ligase binding activity. Involved in synaptic vesicle lumen acidification. Part of proton-transporting V-type ATPase complex. Is expressed in several structures, including alimentary system; blastocyst; genitourinary system; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in early-onset epilepsy 3 and thyroid gland carcinoma. Orthologous to human ATP6V0C (ATPase H+ transporting V0 subunit c).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A; At; Atp; Atp6; Atp6c; Atp6c2; Atp6l; ATPase, H+ transporting, lysosomal (vacuolar proton pump) 16 kDa; ATPase, H+ transporting, lysosomal 16kD, V0 subunit C; ATPase, H+ transporting, lysosomal 2; Atpl; Atpl-rs1; H(+)-ATPase (mvp); PL; PL16; pro; V-ATPase 16 kDa proteolipid subunit; V-ATPase 16 kDa proteolipid subunit c; V-type proton ATPase 16 kDa proteolipid subunit; V-type proton ATPase 16 kDa proteolipid subunit c; vacuolar proton pump 16 kDa proteolipid subunit; vacuolar proton pump 16 kDa proteolipid subunit c; VATL; Vma3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,382,839 - 24,388,652 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,382,840 - 24,388,676 (-)EnsemblGRCm39 Ensembl
GRCm381724,163,865 - 24,169,678 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,163,866 - 24,169,702 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,300,833 - 24,306,374 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,891,488 - 23,897,029 (-)NCBIMGSCv36mm8
Celera1724,669,200 - 24,674,661 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-azacytidine  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bucladesine  (ISO)
butan-1-ol  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
carbon nanotube  (EXP)
carmustine  (ISO)
choline  (EXP)
clobetasol  (EXP)
dichlorine  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (EXP)
fumonisin B1  (EXP)
gentamycin  (ISO)
hexadecanoic acid  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
Licochalcone B  (ISO)
Maduramicin  (ISO)
maneb  (EXP)
medroxyprogesterone acetate  (ISO)
miconazole  (EXP)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
phenylpropanolamine  (EXP)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
reactive oxygen species  (EXP)
rotenone  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
testosterone  (ISO)
titanium dioxide  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vinclozolin  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. PFKFB2 Promoter Hypomethylation as Recurrence Predictive Marker in Well-Differentiated Thyroid Carcinomas. Camargo Barros-Filho M, etal., Int J Mol Sci. 2019 Mar 16;20(6). pii: ijms20061334. doi: 10.3390/ijms20061334.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1828149   PMID:8741845   PMID:9600738   PMID:10349636   PMID:10556625   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11112332   PMID:11172053   PMID:11441017   PMID:11595166  
PMID:12133826   PMID:12374761   PMID:12438748   PMID:12477932   PMID:12904583   PMID:12947086   PMID:12963731   PMID:14610273   PMID:14681479   PMID:15747579   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:17497178   PMID:18799693   PMID:20093472   PMID:21267068   PMID:21873635   PMID:22496890   PMID:24166050   PMID:24457600   PMID:24803591   PMID:28793259  
PMID:31471894   PMID:33760820   PMID:34588579   PMID:36293380   PMID:36808153   PMID:37142655   PMID:37758766   PMID:38481802  


Genomics

Comparative Map Data
Atp6v0c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,382,839 - 24,388,652 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,382,840 - 24,388,676 (-)EnsemblGRCm39 Ensembl
GRCm381724,163,865 - 24,169,678 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,163,866 - 24,169,702 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,300,833 - 24,306,374 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,891,488 - 23,897,029 (-)NCBIMGSCv36mm8
Celera1724,669,200 - 24,674,661 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.29NCBI
ATP6V0C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,513,726 - 2,520,218 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,513,952 - 2,520,218 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,563,727 - 2,570,219 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,503,954 - 2,510,220 (+)NCBINCBI36Build 36hg18NCBI36
Build 34162,503,953 - 2,510,219NCBI
Celera162,755,525 - 2,785,155 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,489,699 - 2,496,194 (+)NCBIHuRef
CHM1_1162,563,664 - 2,570,161 (+)NCBICHM1_1
T2T-CHM13v2.0162,535,856 - 2,542,340 (+)NCBIT2T-CHM13v2.0
Atp6v0c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,700,764 - 13,707,147 (-)NCBIGRCr8
mRatBN7.21013,196,204 - 13,202,580 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,196,204 - 13,201,500 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,941,023 - 17,946,085 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,429,860 - 17,434,922 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,928,324 - 12,933,402 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,537,031 - 13,543,407 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,537,033 - 13,542,077 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,352,991 - 13,359,367 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,415,671 - 13,420,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,415,670 - 13,420,715 (-)NCBI
Celera1012,882,252 - 12,887,296 (-)NCBICelera
Cytogenetic Map10q12NCBI
Atp6v0c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,791,795 - 14,798,066 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,791,795 - 14,798,066 (-)NCBIChiLan1.0ChiLan1.0
ATP6V0C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2183,015,432 - 3,021,889 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,796,438 - 6,802,895 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,370,460 - 1,376,775 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,613,096 - 2,619,204 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,613,096 - 2,619,204 (+)Ensemblpanpan1.1panPan2
ATP6V0C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,519,869 - 38,525,217 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,520,765 - 38,525,062 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,758,250 - 39,763,598 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,829,102 - 38,834,450 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,829,102 - 38,834,443 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,514,259 - 38,519,609 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,486,868 - 38,492,219 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,962,951 - 38,968,303 (-)NCBIUU_Cfam_GSD_1.0
Atp6v0c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,167,247 - 105,173,070 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366941,536,393 - 1,542,218 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1339,532,707 - 39,538,704 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,700,733 - 42,706,549 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,387,891 - 2,394,111 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,387,812 - 2,394,180 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606828,630,936 - 28,637,307 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824267,102 - 272,893 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824267,102 - 272,893 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp6v0c
229 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1100
Count of miRNA genes:423
Interacting mature miRNAs:475
Transcripts:ENSMUST00000024932, ENSMUST00000098862, ENSMUST00000148541, ENSMUST00000150647, ENSMUST00000151061, ENSMUST00000156061
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1219832925076769Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
12910769Rtmq1_mrenal tumor modifier QTL 1 (mouse)172290003625721472Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse

Markers in Region
Atp6l  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17A3.3UniSTS
cM Map72.0UniSTS
Atp6c3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B1UniSTS
Cytogenetic Map17A3.3UniSTS
cM Map614.5UniSTS
cM Map72.0UniSTS
cM Map620.5UniSTS
Atp6l  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map6B1UniSTS
cM Map72.0UniSTS
cM Map17 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB059662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF356008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB873227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP769833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY140472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY245103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M64298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U13842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000024932   ⟹   ENSMUSP00000024932
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,382,840 - 24,388,435 (-)Ensembl
GRCm38.p6 Ensembl1724,163,866 - 24,169,461 (-)Ensembl
Ensembl Acc Id: ENSMUST00000098862   ⟹   ENSMUSP00000111059
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,383,127 - 24,388,651 (-)Ensembl
GRCm38.p6 Ensembl1724,164,153 - 24,169,677 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148541   ⟹   ENSMUSP00000121464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,383,394 - 24,388,622 (-)Ensembl
GRCm38.p6 Ensembl1724,164,420 - 24,169,648 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,383,516 - 24,388,676 (-)Ensembl
GRCm38.p6 Ensembl1724,164,542 - 24,169,702 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151061
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,382,840 - 24,386,003 (-)Ensembl
GRCm38.p6 Ensembl1724,163,866 - 24,167,029 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156061
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,383,512 - 24,388,040 (-)Ensembl
GRCm38.p6 Ensembl1724,164,538 - 24,169,066 (-)Ensembl
RefSeq Acc Id: NM_001361531   ⟹   NP_001348460
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,382,839 - 24,388,652 (-)NCBI
GRCm381724,163,865 - 24,169,678 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361532   ⟹   NP_001348461
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,382,839 - 24,388,652 (-)NCBI
GRCm381724,163,865 - 24,169,678 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361533   ⟹   NP_001348462
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,382,839 - 24,388,652 (-)NCBI
GRCm381724,163,865 - 24,169,678 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361534   ⟹   NP_001348463
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,382,839 - 24,388,424 (-)NCBI
GRCm381724,163,865 - 24,169,450 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361535   ⟹   NP_001348464
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,382,839 - 24,387,783 (-)NCBI
GRCm381724,163,865 - 24,168,809 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009729   ⟹   NP_033859
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,382,839 - 24,388,424 (-)NCBI
GRCm381724,163,865 - 24,169,450 (-)NCBI
MGSCv371724,300,833 - 24,306,374 (-)RGD
Celera1724,669,200 - 24,674,661 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_033859   ⟸   NM_009729
- Peptide Label: isoform b
- UniProtKB: Q3TD69 (UniProtKB/Swiss-Prot),   P63082 (UniProtKB/Swiss-Prot),   A3KML5 (UniProtKB/TrEMBL),   Q3UK60 (UniProtKB/TrEMBL),   Q4KL27 (UniProtKB/TrEMBL),   Q5XK06 (UniProtKB/TrEMBL),   Q8C1D9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001348462   ⟸   NM_001361533
- Peptide Label: isoform c
- UniProtKB: Q3UK60 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348461   ⟸   NM_001361532
- Peptide Label: isoform b
- UniProtKB: Q3TD69 (UniProtKB/Swiss-Prot),   P63082 (UniProtKB/Swiss-Prot),   A3KML5 (UniProtKB/TrEMBL),   Q3UK60 (UniProtKB/TrEMBL),   Q4KL27 (UniProtKB/TrEMBL),   Q5XK06 (UniProtKB/TrEMBL),   Q8C1D9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348460   ⟸   NM_001361531
- Peptide Label: isoform a
RefSeq Acc Id: NP_001348463   ⟸   NM_001361534
- Peptide Label: isoform c
- UniProtKB: Q3UK60 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001348464   ⟸   NM_001361535
- Peptide Label: isoform c
- UniProtKB: Q3UK60 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000111059   ⟸   ENSMUST00000098862
Ensembl Acc Id: ENSMUSP00000121464   ⟸   ENSMUST00000148541
Ensembl Acc Id: ENSMUSP00000024932   ⟸   ENSMUST00000024932
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P63082-F1-model_v2 AlphaFold P63082 1-155 view protein structure

Promoters
RGD ID:13674996
Promoter ID:EPDNEW_M21647
Type:initiation region
Name:Atp6v0c_1
Description:Mus musculus ATPase, H+ transporting, lysosomal V0 subunit C, transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381724,169,418 - 24,169,478EPDNEW
RGD ID:6847348
Promoter ID:MM_ACW:22000
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Lung,   Spleen
Transcripts:ATP6V0C.ESEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361724,301,711 - 24,302,211 (-)MPROMDB
RGD ID:6827840
Promoter ID:MM_KWN:22494
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B6
Transcripts:OTTMUST00000058235
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361724,303,676 - 24,304,937 (-)MPROMDB
RGD ID:6828151
Promoter ID:MM_KWN:22495
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:BC126881_1_GM15487,   ENSMUST00000098862,   OTTMUST00000058234,   OTTMUST00000058237,   OTTMUST00000058238,   OTTMUST00000058239
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361724,305,686 - 24,306,837 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88116 AgrOrtholog
Ensembl Genes ENSMUSG00000024121 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000024932 ENTREZGENE
  ENSMUST00000024932.12 UniProtKB/Swiss-Prot
  ENSMUST00000098862 ENTREZGENE
  ENSMUST00000098862.9 UniProtKB/Swiss-Prot
  ENSMUST00000148541.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.610 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATPase_proteolipid_c-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_proteolipid_csu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_proteolipid_su_C_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F/V-ATP_Csub_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11984 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88116 ENTREZGENE
NCBI Gene Atp6v0c ENTREZGENE
PANTHER V-TYPE PROTON ATPASE 16 KDA PROTEOLIPID SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ATP-synt_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp6v0c PhenoGen
PRINTS VACATPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF81333 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A3KML5 ENTREZGENE, UniProtKB/TrEMBL
  E9Q9C5_MOUSE UniProtKB/TrEMBL
  P63082 ENTREZGENE
  Q3TD69 ENTREZGENE
  Q3UK60 ENTREZGENE, UniProtKB/TrEMBL
  Q4KL27 ENTREZGENE
  Q5XK06 ENTREZGENE
  Q80YP7_MOUSE UniProtKB/TrEMBL
  Q8C1D9 ENTREZGENE, UniProtKB/TrEMBL
  VATL_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P23967 UniProtKB/Swiss-Prot
  Q3TD69 UniProtKB/Swiss-Prot
  Q4KL27 UniProtKB/TrEMBL
  Q5XK06 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Atp6v0c  ATPase, H+ transporting, lysosomal V0 subunit C  Atp6c2  ATPase, H+ transporting, lysosomal 2  Symbol and/or name change 5135510 APPROVED
2024-08-21 Atp6c2  ATPase, H+ transporting, lysosomal 2  Atp6v0c  ATPase, H+ transporting, lysosomal V0 subunit C  Symbol and/or name change 5135510 APPROVED