Parva (parvin, alpha) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Parva (parvin, alpha) Mus musculus
Analyze
Symbol: Parva
Name: parvin, alpha
RGD ID: 731888
MGI Page MGI
Description: Enables actin binding activity. Involved in several processes, including circulatory system development; smooth muscle cell chemotaxis; and substrate adhesion-dependent cell spreading. Acts upstream of or within cell adhesion. Located in several cellular components, including focal adhesion; lamellipodium; and nucleus. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human PARVA (parvin alpha).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2010012A22Rik; 5430400F08Rik; act; actopaxin; Actp; AI225929; alpha-parvin; AU042898; CH-IL; CH-ILKBP; Parvin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397112,027,102 - 112,190,899 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7112,026,712 - 112,190,899 (+)EnsemblGRCm39 Ensembl
GRCm387112,427,706 - 112,591,688 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7112,427,505 - 112,591,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv377119,571,220 - 119,735,202 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367112,218,887 - 112,382,869 (+)NCBIMGSCv36mm8
Celera7112,405,042 - 112,563,819 (+)NCBICelera
Cytogenetic Map7F1NCBI
cM Map758.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
butanal  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
choline  (EXP)
chromium(6+)  (EXP)
cisplatin  (EXP)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
genistein  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
methimazole  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenylephrine  (ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (EXP)
propiconazole  (ISO)
SB 431542  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
sulfadimethoxine  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
topotecan  (ISO)
troglitazone  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. ILK, PINCH and parvin: the tIPP of integrin signalling. Legate KR, etal., Nat Rev Mol Cell Biol. 2006 Jan;7(1):20-31.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Actopaxin, a new focal adhesion protein that binds paxillin LD motifs and actin and regulates cell adhesion. Nikolopoulos SN and Turner CE, J Cell Biol 2000 Dec 25;151(7):1435-48.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11171322   PMID:11331308   PMID:11722847   PMID:12432066   PMID:12477932   PMID:12490950   PMID:14610273   PMID:14681479  
PMID:15353548   PMID:15489334   PMID:15782199   PMID:15872073   PMID:16141072   PMID:16141073   PMID:16984773   PMID:18799693   PMID:19349584   PMID:19435803   PMID:19798050   PMID:19829382  
PMID:21677750   PMID:21873635   PMID:23236519   PMID:23612611   PMID:23658024   PMID:25925587   PMID:27019299   PMID:28546219   PMID:29162887   PMID:29567677   PMID:31748531   PMID:32163511  
PMID:32325033   PMID:35260418   PMID:35688156   PMID:37607905   PMID:38355793  


Genomics

Comparative Map Data
Parva
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397112,027,102 - 112,190,899 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7112,026,712 - 112,190,899 (+)EnsemblGRCm39 Ensembl
GRCm387112,427,706 - 112,591,688 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7112,427,505 - 112,591,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv377119,571,220 - 119,735,202 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367112,218,887 - 112,382,869 (+)NCBIMGSCv36mm8
Celera7112,405,042 - 112,563,819 (+)NCBICelera
Cytogenetic Map7F1NCBI
cM Map758.76NCBI
PARVA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381112,376,436 - 12,535,356 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1112,377,563 - 12,535,356 (+)EnsemblGRCh38hg38GRCh38
GRCh371112,399,118 - 12,556,903 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361112,355,722 - 12,507,986 (+)NCBINCBI36Build 36hg18NCBI36
Build 341112,355,678 - 12,508,919NCBI
Celera1112,524,458 - 12,676,606 (+)NCBICelera
Cytogenetic Map11p15.3NCBI
HuRef1112,075,562 - 12,234,995 (+)NCBIHuRef
CHM1_11112,397,901 - 12,555,768 (+)NCBICHM1_1
T2T-CHM13v2.01112,468,314 - 12,627,400 (+)NCBIT2T-CHM13v2.0
Parva
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,981,725 - 176,139,523 (+)NCBIGRCr8
mRatBN7.21166,547,142 - 166,704,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1166,547,132 - 166,704,950 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1174,881,953 - 175,040,801 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01182,067,965 - 182,226,830 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01174,767,911 - 174,922,672 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01177,249,302 - 177,408,160 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1177,249,226 - 177,408,205 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01184,227,712 - 184,383,031 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41170,232,441 - 170,387,843 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11170,352,374 - 170,507,777 (+)NCBI
Celera1164,422,597 - 164,576,541 (+)NCBICelera
Cytogenetic Map1q33NCBI
Parva
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541427,813,745 - 27,960,743 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541427,813,745 - 27,960,743 (+)NCBIChiLan1.0ChiLan1.0
PARVA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2914,820,723 - 14,975,758 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11114,785,176 - 14,943,318 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01112,544,232 - 12,701,517 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11112,237,446 - 12,394,986 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1112,237,446 - 12,387,584 (+)Ensemblpanpan1.1panPan2
PARVA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12135,382,447 - 35,536,791 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2135,382,462 - 35,536,776 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2134,919,902 - 35,050,892 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02136,260,512 - 36,428,746 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2136,261,661 - 36,428,744 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12135,521,317 - 35,688,912 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02135,697,872 - 35,865,269 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02135,985,531 - 36,152,922 (+)NCBIUU_Cfam_GSD_1.0
Parva
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494749,943,929 - 50,096,357 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365285,977,913 - 6,130,956 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365285,977,909 - 6,130,814 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PARVA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl246,839,485 - 47,028,963 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1246,839,081 - 47,028,102 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2250,265,945 - 50,333,565 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PARVA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1152,310,145 - 52,470,617 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl152,310,494 - 52,470,369 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038149,905,919 - 150,072,173 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Parva
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247664,391,010 - 4,544,842 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247664,390,952 - 4,544,550 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Parva
4684 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4107
Count of miRNA genes:943
Interacting mature miRNAs:1363
Transcripts:ENSMUST00000033030, ENSMUST00000106640, ENSMUST00000106643, ENSMUST00000123185, ENSMUST00000126047, ENSMUST00000139720
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
4141056Lskcn2_mLSK cell number 2 (mouse)Not determined108482996118693530Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
13524524Bodwtq6_mbody wweight QTL 6 (mouse)7107245693113055693Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
25394557Skmw64_mskeletal muscle weight 64, soleus (mouse)7108715780114592736Mouse
35673311Ari6_mantibody response to influenza 6, day 15, IgG2b (mouse)7108699207115099235Mouse

Markers in Region
RH136007  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387112,591,060 - 112,591,238UniSTSGRCm38
MGSCv377119,734,574 - 119,734,752UniSTSGRCm37
Celera7112,563,191 - 112,563,369UniSTS
Cytogenetic Map7F1UniSTS
RH129506  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387112,591,443 - 112,591,628UniSTSGRCm38
MGSCv377119,734,957 - 119,735,142UniSTSGRCm37
Celera7112,563,574 - 112,563,759UniSTS
Cytogenetic Map7F1UniSTS
RH130233  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387112,588,598 - 112,588,783UniSTSGRCm38
MGSCv377119,732,112 - 119,732,297UniSTSGRCm37
Celera7112,560,729 - 112,560,914UniSTS
Cytogenetic Map7F1UniSTS
Avpr1b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map18D3UniSTS
Cytogenetic MapXF1UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map13B2UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map7F2UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map10B5.1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map18B3UniSTS
cM Map1 UniSTS
AU042898  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387112,591,319 - 112,591,492UniSTSGRCm38
MGSCv377119,734,833 - 119,735,006UniSTSGRCm37
Celera7112,563,450 - 112,563,623UniSTS
Cytogenetic Map7F1UniSTS
Whitehead/MRC_RH71137.07UniSTS
RH125274  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387112,426,652 - 112,426,734UniSTSGRCm38
MGSCv377119,570,166 - 119,570,248UniSTSGRCm37
Celera7112,403,981 - 112,404,063UniSTS
Cytogenetic Map7F1UniSTS
Parva  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
cM Map7 UniSTS
UniSTS:235748  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387112,589,051 - 112,589,264UniSTSGRCm38
MGSCv377119,732,565 - 119,732,778UniSTSGRCm37
Celera7112,561,182 - 112,561,395UniSTS
Cytogenetic Map7F1UniSTS
px-31f3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B5UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map10A3-A4UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B5UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map10C3UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map10B5.1UniSTS
Cytogenetic Map18E4UniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map18D1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B3UniSTS
Cytogenetic Map12C2UniSTS
Cytogenetic Map13B2UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map18D3UniSTS
cM Map1060.0UniSTS
cM Map154.6UniSTS
cM Map439.4UniSTS
cM Map1170.0UniSTS
cM Map1336.0UniSTS
cM Map518.2UniSTS
cM Map1229.0UniSTS
cM MapX42.0UniSTS
cM Map1347.01UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_020606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB045321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF237774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF264766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000033030   ⟹   ENSMUSP00000033030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7112,026,913 - 112,190,899 (+)Ensembl
GRCm38.p6 Ensembl7112,427,706 - 112,591,692 (+)Ensembl
Ensembl Acc Id: ENSMUST00000106640   ⟹   ENSMUSP00000102251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7112,118,908 - 112,188,177 (+)Ensembl
GRCm38.p6 Ensembl7112,519,701 - 112,588,970 (+)Ensembl
Ensembl Acc Id: ENSMUST00000106643   ⟹   ENSMUSP00000102254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7112,026,712 - 112,188,836 (+)Ensembl
GRCm38.p6 Ensembl7112,427,505 - 112,589,629 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126047
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7112,168,457 - 112,178,866 (+)Ensembl
GRCm38.p6 Ensembl7112,569,250 - 112,579,659 (+)Ensembl
Ensembl Acc Id: ENSMUST00000139720   ⟹   ENSMUSP00000118587
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7112,027,112 - 112,152,136 (+)Ensembl
GRCm38.p6 Ensembl7112,427,905 - 112,552,929 (+)Ensembl
RefSeq Acc Id: NM_020606   ⟹   NP_065631
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397112,027,102 - 112,190,899 (+)NCBI
GRCm387112,427,706 - 112,591,688 (+)ENTREZGENE
MGSCv377119,571,220 - 119,735,202 (+)RGD
Celera7112,405,042 - 112,563,819 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006508050   ⟹   XP_006508113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397112,118,898 - 112,190,895 (+)NCBI
GRCm387112,519,691 - 112,591,688 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508051   ⟹   XP_006508114
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397112,027,112 - 112,190,895 (+)NCBI
GRCm387112,427,905 - 112,591,688 (+)NCBI
Sequence:
RefSeq Acc Id: NP_065631   ⟸   NM_020606
- UniProtKB: Q9JJ65 (UniProtKB/Swiss-Prot),   Q9EPC1 (UniProtKB/Swiss-Prot),   Q8C5R4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508114   ⟸   XM_006508051
- Peptide Label: isoform X2
- UniProtKB: Q8C5R4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508113   ⟸   XM_006508050
- Peptide Label: isoform X1
- UniProtKB: Q3UF75 (UniProtKB/TrEMBL),   Q8C5R4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000118587   ⟸   ENSMUST00000139720
Ensembl Acc Id: ENSMUSP00000033030   ⟸   ENSMUST00000033030
Ensembl Acc Id: ENSMUSP00000102251   ⟸   ENSMUST00000106640
Ensembl Acc Id: ENSMUSP00000102254   ⟸   ENSMUST00000106643
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EPC1-F1-model_v2 AlphaFold Q9EPC1 1-372 view protein structure

Promoters
RGD ID:8665259
Promoter ID:EPDNEW_M10660
Type:initiation region
Name:Parva_2
Description:Mus musculus parvin, alpha , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10661  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387112,427,660 - 112,427,720EPDNEW
RGD ID:8665261
Promoter ID:EPDNEW_M10661
Type:initiation region
Name:Parva_1
Description:Mus musculus parvin, alpha , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10660  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387112,427,905 - 112,427,965EPDNEW
RGD ID:6841708
Promoter ID:MM_KWN:52331
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   Brain,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000061108,   OTTMUST00000061110,   UC009JGS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367119,570,456 - 119,571,597 (+)MPROMDB
RGD ID:6841706
Promoter ID:MM_KWN:52335
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:OTTMUST00000061113
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367119,712,481 - 119,712,981 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1931144 AgrOrtholog
Ensembl Genes ENSMUSG00000030770 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033030 ENTREZGENE
  ENSMUST00000033030.14 UniProtKB/Swiss-Prot
  ENSMUST00000106640 ENTREZGENE
  ENSMUST00000106640.2 UniProtKB/TrEMBL
  ENSMUST00000106643.8 UniProtKB/Swiss-Prot
  ENSMUST00000139720.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Parvin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:57342 UniProtKB/Swiss-Prot
MGD MGI:1931144 ENTREZGENE
NCBI Gene 57342 ENTREZGENE
PANTHER ALPHA-PARVIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12114 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Parva PhenoGen
PIRSF Parvin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D6RHM9_MOUSE UniProtKB/TrEMBL
  PARVA_MOUSE UniProtKB/Swiss-Prot
  Q3UF75 ENTREZGENE, UniProtKB/TrEMBL
  Q8C5R4 ENTREZGENE, UniProtKB/TrEMBL
  Q9EPC1 ENTREZGENE
  Q9JJ65 ENTREZGENE
UniProt Secondary Q9JJ65 UniProtKB/Swiss-Prot