Slc15a3 (solute carrier family 15, member 3)

Advanced Search (OLGA)

Gene: Slc15a3 (solute carrier family 15, member 3) Mus musculus

Analyze

Symbol:

Slc15a3

Name:

solute carrier family 15, member 3

RGD ID:

731836

MGI Page

MGI

Description:

Enables peptidoglycan transmembrane transporter activity. Involved in peptidoglycan transport and positive regulation of nucleotide-binding activity oligomerization domain containing 2 signaling pathway. Located in endosome membrane and lysosomal membrane. Is expressed in several structures, including brain; gut; hemolymphoid system; liver lobe; and testis. Orthologous to human SLC15A3 (solute carrier family 15 member 3).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cAMP inducible gene 1; cAMP-inducible gene 1 protein; Ci; cI-; cI-1; Ci1; peptide transporter 3; peptide/histidine transporter 2; solute carrier family 15 member 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	10,819,908 - 10,835,279 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	10,817,091 - 10,836,726 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	10,842,544 - 10,857,915 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	10,839,727 - 10,859,362 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	10,917,034 - 10,932,405 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	10,909,589 - 10,924,948 (+)	NCBI		MGSCv36	mm8
Celera	19	11,535,605 - 11,550,983 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	7.23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

intellectual disability (ISO)

leukocyte adhesion deficiency 3 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

1-naphthyl isothiocyanate (ISO)

17beta-estradiol (ISO)

17beta-estradiol 3-benzoate (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (EXP)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzene (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

bisphenol F (ISO)

carbon nanotube (EXP)

cefaloridine (ISO)

chloroprene (EXP,ISO)

chlorpyrifos (EXP)

Cuprizon (ISO)

Dibutyl phosphate (ISO)

dioxygen (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethanol (EXP)

genistein (EXP)

gentamycin (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

indole-3-methanol (ISO)

lipopolysaccharide (ISO)

N-nitrosodimethylamine (ISO)

nickel atom (ISO)

oxaliplatin (ISO)

oxycodone (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (EXP)

perfluorooctane-1-sulfonic acid (EXP)

pravastatin (EXP,ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (EXP)

Soman (ISO)

streptozocin (ISO)

succimer (EXP)

tamoxifen (EXP)

temozolomide (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (ISO)

toluene (ISO)

topotecan (ISO)

trichloroethene (ISO)

trimellitic anhydride (EXP)

triphenyl phosphate (ISO)

triptonide (EXP)

valproic acid (ISO)

vinclozolin (ISO)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

dipeptide import across plasma membrane (IBA,ISO)

immune system process (IEA)

innate immune response (IEA)

oligopeptide transport (IEA)

peptide transport (IEA)

peptidoglycan transport (IDA)

positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway (IDA)

protein transport (IEA)

transmembrane transport (IEA)

Cellular Component

endosome (IEA)

endosome membrane (IDA)

intracellular membrane-bounded organelle (ISO)

lysosomal membrane (IBA,IDA,ISO)

lysosome (IEA)

membrane (IEA)

Molecular Function

dipeptide transmembrane transporter activity (IBA,ISO)

peptidoglycan transmembrane transporter activity (IDA)

protein binding (ISO)

symporter activity (IEA)

transmembrane transporter activity (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal myeloid dendritic cell morphology (IAGP)

decreased mean corpuscular volume (IEA)

decreased red blood cell distribution width (IEA)

increased circulating serum albumin level (IEA)

increased monocyte cell number (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11004510	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:21267068	PMID:21677750	PMID:21873635
PMID:24194600	PMID:24695226	PMID:27553280	PMID:27626380	PMID:32325033	PMID:35349343	PMID:38355793	PMID:38374230

Genomics

Comparative Map Data

Slc15a3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	10,819,908 - 10,835,279 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	10,817,091 - 10,836,726 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	10,842,544 - 10,857,915 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	10,839,727 - 10,859,362 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	10,917,034 - 10,932,405 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	10,909,589 - 10,924,948 (+)	NCBI		MGSCv36	mm8
Celera	19	11,535,605 - 11,550,983 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	7.23	NCBI

SLC15A3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	60,937,084 - 60,952,176 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	60,937,060 - 60,952,653 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	60,704,556 - 60,719,648 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	60,461,134 - 60,475,833 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	60,461,135 - 60,475,833	NCBI
Celera	11	58,065,442 - 58,080,124 (-)	NCBI		Celera
Cytogenetic Map	11	q12.2	NCBI
HuRef	11	57,050,724 - 57,065,416 (-)	NCBI		HuRef
CHM1_1	11	60,570,855 - 60,585,488 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	60,888,231 - 60,903,306 (-)	NCBI		T2T-CHM13v2.0

Slc15a3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	216,906,836 - 216,932,046 (+)	NCBI		GRCr8
mRatBN7.2	1	207,492,365 - 207,507,158 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	207,492,365 - 207,507,157 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	215,867,205 - 215,881,996 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	222,927,770 - 222,942,588 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	215,621,593 - 215,636,384 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	226,896,387 - 226,912,644 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	226,897,625 - 226,912,708 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	233,963,402 - 233,978,193 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	213,341,322 - 213,356,103 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	213,499,751 - 213,514,532 (+)	NCBI
Celera	1	204,984,950 - 204,999,742 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Slc15a3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955511	5,574,840 - 5,582,307 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955511	5,574,686 - 5,582,992 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC15A3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	62,106,337 - 62,121,515 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	63,150,381 - 63,165,578 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	56,200,278 - 56,215,451 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	59,640,834 - 59,655,144 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	59,640,970 - 59,655,535 (-)	Ensembl	panpan1.1		panPan2

SLC15A3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	55,354,987 - 55,363,672 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	53,928,148 - 53,936,956 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	56,403,606 - 56,412,382 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	18	55,460,980 - 55,469,748 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	55,082,563 - 55,091,327 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	55,963,727 - 55,972,508 (+)	NCBI		UU_Cfam_GSD_1.0

Slc15a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	11,871,196 - 11,883,099 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	1,984,344 - 1,996,924 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	1,985,062 - 1,996,924 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC15A3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	10,800,503 - 10,814,389 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	10,799,927 - 10,814,363 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	10,352,005 - 10,366,583 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC15A3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	12,896,612 - 12,910,740 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	12,895,982 - 12,912,214 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	110,264,616 - 110,279,317 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc15a3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624926	294,376 - 303,248 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624926	294,263 - 303,326 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc15a3
439 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	711
Count of miRNA genes:	406
Interacting mature miRNAs:	467
Transcripts:	ENSMUST00000025646, ENSMUST00000131010, ENSMUST00000138263, ENSMUST00000138380
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142302	Nstr1_m	nerve sheath tumor resistance QTL 1 (mouse)			Not determined		19	1	22371338	Mouse
1301271	Datd_m	dopamine transporter density (mouse)			Not determined		19	1	32340234	Mouse
1300923	Bits4_m	bitterness sensitivity 4 (mouse)			Not determined		19	3323216	37323348	Mouse
11039522	Tbbr4_m	Trypanosoma brucei brucei response 4 (mouse)					19	5313326	39313470	Mouse
4142161	Drinksac2_m	drink saccharin 2 (mouse)			Not determined			1	20695286	Mouse
1357819	Tgct2_m	testicular germ cell tumor 2 (mouse)			Not determined		19	3328551	20539663	Mouse
1302019	Pgia23_m	proteoglycan induced arthritis 23 (mouse)			Not determined		19	9787453	43787602	Mouse
38455997	Cdtm2_m	CD62L+ CD8 TM cells 2 (mouse)					19	9977364	19977364	Mouse
4142406	Pbctlp1_m	peripheral blood cytotoxic T lymphocyte percentage 1 (mouse)			Not determined			1	32875174	Mouse
1300776	Lfp3_m	long free running period 3 (mouse)			Not determined		19	1	20328703	Mouse
1300904	Chab5_m	cholesterol absorption 5 (mouse)			Not determined		19	1653764	35653927	Mouse
26884385	Skwq14_m	skull length QTL 14, 16 week (mouse)					19	3250000	35877400	Mouse
1301800	Faq10_m	fluctuating asymmetry QTL 10 (mouse)			Not determined		19	3323216	37323348	Mouse
1300591	Pas3_m	pulmonary adenoma susceptibility 3 (mouse)			Not determined		19	3323216	37323348	Mouse
1302126	Skull26_m	skull morphology 26 (mouse)			Not determined		19	3323216	37323348	Mouse
1301228	Iba4_m	induction of brown adipocytes 4 (mouse)			Not determined		19	9305715	43305821	Mouse

Markers in Region

01.MMHAP6FRA7.seq

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	19	10,852,190 - 10,852,267	UniSTS	GRCm38
MGSCv37	19	10,926,680 - 10,926,757	UniSTS	GRCm37
Celera	19	11,545,250 - 11,545,327	UniSTS
Cytogenetic Map	19	B	UniSTS
Whitehead_YAC	19		UniSTS

R74613

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	19	10,858,488 - 10,858,642	UniSTS	GRCm38
MGSCv37	19	10,932,978 - 10,933,132	UniSTS	GRCm37
Celera	19	11,551,556 - 11,551,710	UniSTS
Cytogenetic Map	19	B	UniSTS
Cytogenetic Map	19	A	UniSTS
Whitehead_YAC	19		UniSTS

RH125077

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	19	10,858,399 - 10,858,514	UniSTS	GRCm38
MGSCv37	19	10,932,889 - 10,933,004	UniSTS	GRCm37
Celera	19	11,551,467 - 11,551,582	UniSTS
Cytogenetic Map	19	B	UniSTS
Cytogenetic Map	19	A	UniSTS

RH141151

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	19	10,857,228 - 10,857,728	UniSTS	GRCm38
MGSCv37	19	10,931,718 - 10,932,218	UniSTS	GRCm37
Celera	19	11,550,296 - 11,550,796	UniSTS
Cytogenetic Map	19	B	UniSTS

Slc15a3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	19	B	UniSTS
cM Map	19	7.23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_023044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC132402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF121080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK051941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK171698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC051940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000025646 ⟹ ENSMUSP00000025646

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	10,819,908 - 10,835,279 (+)	Ensembl
GRCm38.p6 Ensembl	19	10,842,544 - 10,857,915 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000131010

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	10,819,914 - 10,820,835 (+)	Ensembl
GRCm38.p6 Ensembl	19	10,842,550 - 10,843,471 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000138263

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	10,820,259 - 10,836,726 (+)	Ensembl
GRCm38.p6 Ensembl	19	10,842,895 - 10,859,362 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000138380

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	19	10,817,091 - 10,820,711 (+)	Ensembl
GRCm38.p6 Ensembl	19	10,839,727 - 10,843,347 (+)	Ensembl

RefSeq Acc Id:

NM_023044 ⟹ NP_075531

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	19	10,819,908 - 10,835,279 (+)	NCBI
GRCm38	19	10,842,544 - 10,857,915 (+)	ENTREZGENE
MGSCv37	19	10,917,034 - 10,932,405 (+)	RGD
Celera	19	11,535,605 - 11,550,983 (+)	RGD
cM Map	19		ENTREZGENE

Sequence:

show sequence

GAGAGGAAGAGCCAGAGGGGACTAAGGAAGGAAGAGAAGCAGTCAAGCAAAAAGGAGTGTGTAG
AGGAGGTGGCCGGGCCAGGGGAGACATTGAGGCCCAGGTATCATAAGAGAAGGGGACAATTAGA
AAAGGCAGTTAACCGGGGACACTAGAGGAAAGGGGGGCCGGGAGGATAAGGTAGTGGAGCAAGC
AGGATGATGGGGTAGGGTTGGGGGGGGGGGGGTAGACTAGGCCAGAGCAGAGGAAGGAAAGGAG
ACGATTTGATAGAAGCACAGGGGAGATGAACAAGAAGAACTGGGAGGGGAAGGAGTGAGTGGAG
AGTTCAAGTGGAGATAGAAACTAGGTAGCAAGGAGAGGGACCTGAGGGAAAAAGAGAGAGAGAA
CGACACGGGGTGAGAAAAGAGGGCGATCAGGGTTAGGGGAGAGGAGGGGAGGACAGAGGAGAGA
GTCTGGGTCACGGAGACAGGAAGGCCAGGATGTCTGCCCCTCGCGCGGAAGAGCAACCAAGCAG
GTCCGGAGAGCGACAACCGCTGGTGGCCCGAGGCCCGCGGGGACCACGACGGTGGAGACGGACA
GCTGCTGCTGCGGTGCTGCTAGTGCAGATGCTGGAACGCGCTGCCTTCTTTGGTGTCACCTCCA
ACCTCGTGCTCTACCTCAACAGCTTGAACTTCAATTGGGACGGCCAACAGGCATCACGGGCCAC
ACTCCTCTTCCTAGGCGCCTCCTACCTGCTGGCTCCAGTGGGGGGCTGGCTGGCAGACGTGTAC
CTGGGACGCTTCCTCACTATCTCGCTCAGCCTGCTGCTCTATCTGGCTGCCTCTGGCTTGTTGC
TCACCACCATCACCAATGATGGCCGCAGATCCTTCTGTGGAGAGATGCCCGAGTTGCCACTGGA
ACCTGCCTGCCCATCCTCAAGCTGCCAAGGCTCCTGGTCCAGCCCCTACTGCGCGACCACCCTC
TACTTGGTGTTGCTGCTCCTGGCCCTGGCTGCCAGCTCCGTCAGGAGCACCCTCACCTCGTTCG
GGGCTGACCAGGTGATGGATCTCGGGCGCGATGCCACCCGCCGCTTCTTCAACTGGTTCTATTG
GAGCATCAACCTGGGTGCCATATTGTCCCTGTTGGTGGTGGCTTTCATCGAGCAGAACATCAGC
TTCCTATGGGGCTACAGCATCATCGTGGGCCTCGTGGGCCTGGCATTCTTCATTTTTCTCTTTG
CCACACCAGTCTTCATCACCAAGCCCCCAACAGGCAGCCAAGTGTCATCTATGCTGAAGCTTGC
GTTCCAAAACTGCTGTCCCTGCCGGAGGTCCTCTTCCAGGGACTCTGAAAGTGCCCACCTGTTG
CCTGACCAGAGGTCTAACCAGCCTGGACCTTCTCCACAAGAAGATATGGCCAACTTCCAGGTGC
TGGTGAAGATCCTGCCTGTGATGGTGACCCTTGTGCCTTATTGGATGGTATATTTCCAGATGCA
GTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAAC
ATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGGATCCCAGAAGCCTGGCTCCTACTGG
CCAATGTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGATCCTCTGCTGCT
GCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACC
TCCATCATTGTGGCAGGAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAG
TGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCC
CCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAGGTCTGGAGTTCGCTTAC
TCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGG
GCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCC
CAAGGACTTTGGGAACATCAACAACTGTCAGATGGACCGTTACTTCTTCCTGCTGGCCGGCATT
GAGGCTGTCACAGCCGTCCTGTTTCTCTGGATTGCTGGTCGCTATGAGAGGACTCGCCAGGACC
CAGCCTCCCAGCGCTCGTCCAGCAGGGTCAGAGGCTAATGGTCTCCACCCACCCTGACAGAGAG
TGTCACAGCAGTACCAGCTATGCCCATTCTTTTCTCATTTATTCTGTACCCAACAGTAGAATGA
AGTGGTTCCCATAAATAAGGGGCATGCGCCCTCCCTCTTGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_075531	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD24570	(Get FASTA)	NCBI Sequence Viewer
	AAH51940	(Get FASTA)	NCBI Sequence Viewer
	BAC34816	(Get FASTA)	NCBI Sequence Viewer
	EDL41383	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000025646
	ENSMUSP00000025646.3
GenBank Protein	Q8BPX9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_075531 ⟸ NM_023044

- UniProtKB:

Q9WU80 (UniProtKB/Swiss-Prot), Q8BPX9 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSAPRAEEQPSRSGERQPLVARGPRGPRRWRRTAAAAVLLVQMLERAAFFGVTSNLVLYLNSLN
FNWDGQQASRATLLFLGASYLLAPVGGWLADVYLGRFLTISLSLLLYLAASGLLLTTITNDGRR
SFCGEMPELPLEPACPSSSCQGSWSSPYCATTLYLVLLLLALAASSVRSTLTSFGADQVMDLGR
DATRRFFNWFYWSINLGAILSLLVVAFIEQNISFLWGYSIIVGLVGLAFFIFLFATPVFITKPP
TGSQVSSMLKLAFQNCCPCRRSSSRDSESAHLLPDQRSNQPGPSPQEDMANFQVLVKILPVMVT
LVPYWMVYFQMQSTYVLQGLHLHIPNIFRTNPNISLLLRSDSSNYRIPEAWLLLANVAVILILI
PVKDHLIDPLLLRCKLLPSSLQKMALGMFFGFTSIIVAGVLEKERLQYIAANQTVPQLIGKDLY
YAAPLSIWWQIPQYLLIGVSEIFASIPGLEFAYSEAPRSMQGAIMGIFFCLSGVGSLLGSGLVA
LLSFPGGWMYCPKDFGNINNCQMDRYFFLLAGIEAVTAVLFLWIAGRYERTRQDPASQRSSSRV
RG

hide sequence

Ensembl Acc Id:

ENSMUSP00000025646 ⟸ ENSMUST00000025646

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8BPX9-F1-model_v2	AlphaFold	Q8BPX9	1-578	view protein structure

Promoters

RGD ID:

13678934

Promoter ID:

EPDNEW_M23616

Type:

initiation region

Name:

Slc15a3_1

Description:

Mus musculus solute carrier family 15, member 3 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M23617

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	19	10,842,539 - 10,842,599	EPDNEW

RGD ID:

13678936

Promoter ID:

EPDNEW_M23617

Type:

initiation region

Name:

Slc15a3_2

Description:

Mus musculus solute carrier family 15, member 3 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M23616

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	19	10,842,767 - 10,842,827	EPDNEW

RGD ID:

6829955

Promoter ID:

MM_KWN:26400

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour

Transcripts:

OTTMUST00000070029, OTTMUST00000086500, UC008GRB.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	19	10,916,276 - 10,917,712 (+)	MPROMDB

RGD ID:

6848732

Promoter ID:

MM_TRO:4997

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_4Hour

Transcripts:

MTR008723.19.392.3

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	19	10,931,926 - 10,932,426 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1929691	AgrOrtholog
Ensembl Genes	ENSMUSG00000024737	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000025646	ENTREZGENE
	ENSMUST00000025646.3	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.1250.20	UniProtKB/Swiss-Prot
InterPro	MFS_trans_sf	UniProtKB/Swiss-Prot
	POT_fam	UniProtKB/Swiss-Prot
	PTR2_symporter_CS	UniProtKB/Swiss-Prot
KEGG Report	mmu:65221	UniProtKB/Swiss-Prot
MGD	MGI:1929691	ENTREZGENE
NCBI Gene	65221	ENTREZGENE
PANTHER	PTHR11654	UniProtKB/Swiss-Prot
	SOLUTE CARRIER FAMILY 15 MEMBER 3	UniProtKB/Swiss-Prot
Pfam	PTR2	UniProtKB/Swiss-Prot
PhenoGen	Slc15a3	PhenoGen
PROSITE	PTR2_2	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF103473	UniProtKB/Swiss-Prot
UniProt	Q8BPX9	ENTREZGENE
	Q9WU80	ENTREZGENE
	S15A3_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q9WU80	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Mammalian Phenotype

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Mammalian Phenotype