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Gene: Col5a3 (collagen, type V, alpha 3) Mus musculus

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Symbol:

Col5a3

Name:

collagen, type V, alpha 3

RGD ID:

731805

MGI Page

MGI

Description:

Enables heparin binding activity. Acts upstream of or within cell-matrix adhesion. Part of collagen type V trimer. Is expressed in several structures, including bone; embryo mesenchyme; extraembryonic component; placenta; and tongue. Orthologous to human COL5A3 (collagen type V alpha 3 chain).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

collagen alpha-3(V) chain; Pro-alpha3(V); procollagen, type V, alpha 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	20,681,353 - 20,726,363 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	20,681,346 - 20,726,363 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	20,770,050 - 20,815,117 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	20,770,050 - 20,815,067 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	20,574,494 - 20,619,478 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	20,520,452 - 20,565,436 (-)	NCBI		MGSCv36	mm8
Celera	9	18,038,765 - 18,083,744 (-)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	7.63	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

keratoconus (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (EXP,ISO)

2-butoxyethanol (EXP)

4,4'-sulfonyldiphenol (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

4-hydroxyphenyl retinamide (EXP)

6-propyl-2-thiouracil (ISO)

7,12-dimethyltetraphene (ISO)

acetamide (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (EXP)

alpha-Zearalanol (ISO)

amitrole (ISO)

antirheumatic drug (ISO)

arsenite(3-) (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (EXP)

Benzo[ghi]perylene (EXP)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (EXP)

bleomycin A2 (EXP)

cadmium dichloride (ISO)

cantharidin (EXP)

carbon nanotube (EXP)

carmustine (ISO)

chlorpyrifos (EXP)

chrysene (EXP)

cisplatin (ISO)

Cuprizon (ISO)

dexamethasone (ISO)

diallyl trisulfide (ISO)

dibenz[a,h]anthracene (EXP)

diethylstilbestrol (ISO)

diuron (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (ISO)

entinostat (ISO)

fenthion (EXP)

fenvalerate (ISO)

furan (EXP,ISO)

gentamycin (ISO)

lipopolysaccharide (ISO)

methimazole (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

mifepristone (ISO)

N-methyl-N-nitrosourea (ISO)

naphthalene (EXP)

nitric oxide (EXP)

ozone (EXP)

panobinostat (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

pentane-2,3-dione (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (EXP)

pirinixic acid (EXP)

potassium dichromate (EXP)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

S-butyl-DL-homocysteine (S,R)-sulfoximine (EXP)

SB 431542 (ISO)

silver atom (EXP)

silver(0) (EXP)

sodium arsenite (EXP,ISO)

Soman (ISO)

sotorasib (ISO)

testosterone (ISO)

tetrachloroethene (EXP)

tetrachloromethane (EXP)

tetraphene (EXP)

tioguanine (ISO)

titanium dioxide (EXP)

trametinib (ISO)

triadimefon (ISO)

trichostatin A (ISO)

triclosan (ISO)

trimellitic anhydride (EXP)

tungsten (EXP)

undecane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-matrix adhesion (IDA)

extracellular matrix organization (IBA,ISS)

Cellular Component

collagen type V trimer (IDA,ISS)

collagen-containing extracellular matrix (IBA,ISO)

extracellular space (IBA)

Molecular Function

extracellular matrix structural constituent conferring tensile strength (IBA)

heparin binding (IBA,IDA)

proteoglycan binding (ISO)

structural molecule activity (ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

cell-extracellular matrix signaling pathway (IEA)

Entamoebiasis pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal glucose homeostasis (IAGP)

abnormal pancreas physiology (IAGP)

decreased adipocyte glucose uptake (IAGP)

decreased body weight (IAGP)

decreased circulating insulin level (IAGP)

decreased insulin secretion (IAGP)

decreased pancreas weight (IAGP)

decreased pancreatic beta cell mass (IAGP)

decreased pancreatic beta cell number (IAGP)

decreased skeletal muscle cell glucose uptake (IAGP)

decreased subcutaneous adipose tissue amount (IAGP)

decreased susceptibility to diet-induced obesity (IAGP)

hyperglycemia (IAGP)

impaired glucose tolerance (IAGP)

increased pancreatic beta cell apoptosis (IAGP)

increased pancreatic islet cell apoptosis (IAGP)

increased physiological sensitivity to xenobiotic (IAGP)

insulin resistance (IAGP)

weight loss (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10722718	PMID:10922068	PMID:12477932	PMID:12819125	PMID:15136578	PMID:15345741	PMID:15872058	PMID:15908193	PMID:16537572	PMID:18287559	PMID:19906978	PMID:20059976
PMID:20206127	PMID:20424664	PMID:21267068	PMID:21293061	PMID:21873635	PMID:21888903	PMID:22159717	PMID:22214369	PMID:28071719	PMID:28102194	PMID:30840660	PMID:33875569
PMID:36109497	PMID:36335435

Genomics

Comparative Map Data

Col5a3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	20,681,353 - 20,726,363 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	20,681,346 - 20,726,363 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	20,770,050 - 20,815,117 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	20,770,050 - 20,815,067 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	20,574,494 - 20,619,478 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	20,520,452 - 20,565,436 (-)	NCBI		MGSCv36	mm8
Celera	9	18,038,765 - 18,083,744 (-)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	7.63	NCBI

COL5A3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	9,959,561 - 10,010,504 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	9,959,561 - 10,010,504 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	10,070,237 - 10,121,180 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	9,931,237 - 9,982,147 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	9,931,236 - 9,982,147	NCBI
Celera	19	9,965,704 - 10,016,619 (-)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	9,650,383 - 9,701,624 (-)	NCBI		HuRef
CHM1_1	19	10,069,976 - 10,120,955 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	10,085,749 - 10,136,694 (-)	NCBI		T2T-CHM13v2.0

Col5a3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	27,580,768 - 27,626,002 (-)	NCBI		GRCr8
mRatBN7.2	8	19,304,564 - 19,349,809 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	19,304,571 - 19,349,853 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	23,323,956 - 23,369,191 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	21,621,800 - 21,667,038 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	19,534,265 - 19,579,445 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	21,786,324 - 21,831,751 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	21,786,324 - 21,831,668 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	21,842,413 - 21,887,757 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	19,789,061 - 19,834,241 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	19,789,060 - 19,834,241 (-)	NCBI
Celera	8	20,699,885 - 20,745,065 (-)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

Col5a3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955495	1,347,171 - 1,386,683 (-)	NCBI	ChiLan1.0	ChiLan1.0

COL5A3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	14,878,468 - 14,929,787 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	13,878,772 - 13,930,485 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	9,512,028 - 9,563,306 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	10,173,669 - 10,219,487 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	10,174,519 - 10,218,974 (-)	Ensembl	panpan1.1		panPan2

COL5A3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	51,037,604 - 51,075,220 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	51,037,621 - 51,074,993 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	50,904,135 - 50,941,637 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	51,559,592 - 51,597,067 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	51,559,592 - 51,597,082 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	50,767,386 - 50,804,867 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	51,194,321 - 51,231,828 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	51,435,361 - 51,472,809 (+)	NCBI		UU_Cfam_GSD_1.0

Col5a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	209,916,821 - 209,952,872 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	402,637 - 437,697 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	401,834 - 437,896 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COL5A3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	68,827,562 - 68,869,888 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	68,828,197 - 68,869,914 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	69,156,853 - 69,193,735 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COL5A3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	9,033,298 - 9,092,061 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	9,033,287 - 9,091,826 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	10,981,575 - 11,045,222 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Col5a3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624828	2,216,179 - 2,254,868 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Col5a3
1466 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	604
Count of miRNA genes:	354
Interacting mature miRNAs:	402
Transcripts:	ENSMUST00000004201, ENSMUST00000145974
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
35673312	Ari7_m	antibody response to influenza 7, day 45, IgG3 (mouse)					9	7800001	22211296	Mouse
4142326	Tgq19_m	triglyceride QTL 19 (mouse)			Not determined			1	21060750	Mouse
13504834	Hdlq109_m	HDL QTL 109 (mouse)					9	16709641	50709641	Mouse
1357465	Vtbt6_m	vertebral trabecular bone trait 6 (mouse)			Not determined		9	16978840	50978943	Mouse
13504833	Bglu19_m	blood glucose level 19 (mouse)					9	9910768	43910768	Mouse
1357637	Si5lq2_m	serum IGFBP-5 level QTL 2 (mouse)			Not determined		9	15411751	49411890	Mouse
12790993	Adq1_m	aortic diameter QTL 1 (mouse)					9	15749627	49749627	Mouse
10043917	Obq37_m	obesity QTL 37 (mouse)			Not determined		9	13391175	47391175	Mouse
12790997	Adq2_m	aortic diameter QTL 2 (mouse)					9	15749627	49749627	Mouse
12880415	V125Dq7_m	vitamin D active form serum level QTL 7 (mouse)					9	16011296	50011296	Mouse
1300849	Sles4_m	systemic lupus erythmatosus suppressor 4 (mouse)			Not determined		9	9107562	37306370	Mouse
12880416	V125Dq8_m	vitamin D active form serum level QTL 8 (mouse)					9	16011296	50011296	Mouse
13434920	Dcollq1_m	differential colonization level QTL 1 (mouse)					9	1	30341840	Mouse
1301045	Sluc10_m	susceptibility to lung cancer 10 (mouse)			Not determined		9	20306197	54306370	Mouse
1300532	Tbs2_m	tuberculosis severity 2 (mouse)			Not determined		9	12369970	46370114	Mouse
4141591	Cq4_m	cholesterol QTL 4 (mouse)			Not determined		9	15411751	49411890	Mouse
1301883	Skull12_m	skull morphology 12 (mouse)			Not determined		9	20306197	54306370	Mouse
11354951	Pdcc3_m	plasmacytoid dentritic cell compartment 3 (mouse)					9	15749627	49749627	Mouse
1301439	Morph2_m	morphine antinociception 2 (mouse)			Not determined		9	20153362	54153492	Mouse
4142352	Lmr17_m	leishmaniasis resistance 17 (mouse)			Not determined		9	20306197	54306370	Mouse
1300899	Chol6_m	cholesterol 6 (mouse)			Not determined		9	1	29902913	Mouse
1300643	Pvcan2_m	protection against vaginal candidiasis 2 (mouse)			Not determined		9	19943406	53943525	Mouse
10043950	Pbft5_m	percent body fat 5 (mouse)			Not determined		9	20306197	54306370	Mouse
4141447	Cfmq2_m	cystic fibrosis modifier QTL 2 (mouse)			Not determined		9	15411751	49411890	Mouse
1301421	Lgth4_m	body length 4 (mouse)			Not determined		9	15411751	49411890	Mouse

Markers in Region

Col5a3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
MGSCv37	9	20,580,004 - 20,580,289	UniSTS	GRCm37
Celera	9	18,044,275 - 18,044,560	UniSTS
Cytogenetic Map	9	A3	UniSTS
cM Map	9		UniSTS

Col5a3

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	9	20,775,560 - 20,775,845	UniSTS	GRCm38
MGSCv37	9	20,580,004 - 20,580,289	UniSTS	GRCm37
Celera	9	18,044,275 - 18,044,560	UniSTS
Cytogenetic Map	9	A3	UniSTS
cM Map	9		UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001317388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_016919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB040491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC166365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF176645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI482539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI585575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC024367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC138417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC138419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC145269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX511958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY783304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000004201 ⟹ ENSMUSP00000004201

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	9	20,681,346 - 20,726,363 (-)	Ensembl
GRCm38.p6 Ensembl	9	20,770,050 - 20,815,067 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000145974

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	9	20,694,090 - 20,726,363 (-)	Ensembl
GRCm38.p6 Ensembl	9	20,782,794 - 20,815,067 (-)	Ensembl

RefSeq Acc Id:

NM_001317388 ⟹ NP_001304317

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	20,681,353 - 20,726,363 (-)	NCBI
GRCm38	9	20,770,057 - 20,815,067 (-)	NCBI

Sequence:

show sequence

GGGGTCTCGGGCAGTCTCCAGCAGATCCTCACAGCCTCCGGCTGTCCAGAGTGACTGCTCCCAG
GAAGACCAGTCCACATCCCCCTTGGCCTTGGTGCACCAGGCCCCGCTGGGATGAGAAGCTGCCG
GAGACTGGATCAGCTTCAGGCCGGCCTCTGCCTGCTCCTGGCCTCCCTGCAGCTCGTGTCCTGG
ACGCTGGCTGAACCTGTGGACGTACTGGAAGCCTGGGGTGTGCATAGAGACCAGGCTGGGGTGG
CTGAAGGGCCTGGCTTCTGCCCCCTGAGGATTCCACAGGGTGACCGAGCATTCAGGGTGGGCAA
GTCCAGCCTTCTCAGTGTCCCCACGTGGCAGCTCTTCCCAGATGGGCATTTTCCTGAGAACTTT
TCTGTGCTGCTCACACTGAGGGCCCAGCCAGCCAATCAGTCTGTCCTTCTGTCTATTTATGATG
AGAAGGGTGTCCGGCAGCTGGGGCTGGCACTGGGGCCAGCTCTGGGCCTCCTTGGTGACTCCTT
CAGGCCCCTCCCCAAGCAAGTCAACATTATGGATGGCAGGTGGCACCGTGTGGCAGTCAGCATC
AGTGGTAACAAGGTGACCCTGGTGGTTGACTGTGAACCGCAGCCCCCAACATTTGGTCAGGGGC
CTCGGTTTATAAGTACAGCTGGACTCACTGTGATGGGAACCCAGGACACCAGGGAAGAGTCTTT
TGAGGGAGACATCCAGGAGCTGCTGTTAATTCCAGACCCTCAGGCTGCCTTCCAGGCCTGTGAG
AGCTACCTCCCTGGTTGTGAAACCCTCGATTCCACAACCACAGGGGCCCCCAAAGACGATGAAC
CAGAAACCCCTGCCCCTCGTCGTCGAAAGGGCAAAGGGAAGAAAAAAGGGCGGGGTCGAAAGGG
CAAGGGAAGAAAGAAAAACAAGGAGACCTCAGAGCTGAGTCCGACCCCTGGTGCCCCTGAGAAC
CAGACCTCCCTCCACATCCCTGAGACAGAGAAGACAGTTCCCCACCTGCCTCTGACTCCCACAC
CTCTGGCCATCACCACCACTGTCACGATTGGACAAAATGCCACAGTCTCGCAGGGGTTGGACTC
CGGTACTGAAACCGAGCAGACGACTCCAGAGGTGGACTCTACTGAGGAGGGTGAAGGAGGTGGC
CCCACCATGGGCCCCAAGTTCCGGGCAGCAGAGCAGTCCTTACAGACTGAGTTCCAGATCTTTC
CTGGTGCTGGAGAAAAGGGAGCGAAAGGAGAGCCTGCGACAGTAGAGCAGGGACAGCAGTTTGA
GGGGCCTGCAGGAGCTCCAGGACCCCGGGGAATATCTGGTCCTTCAGGCCCTCCTGGGCCTCCG
GGCTTCCCTGGGGACCGTGGTCTACCGGGTCCTGCCGGCCTCCCAGGAATCCCAGGCATCGATG
GAGCCCGGGGCCTGCCGGGCACAGTGATTATGATGCCGTTCCATTTTGCAAGCAGCTCGATGAA
GGGACCCCCAGTGTCCTTCCAGCAGGCCCAGGCCCAGGCAGTATTGCAACAGGCTCAGCTGTCC
ATGAAAGGGCCCCCTGGTCCAGTAGGGCTCACTGGGCGCCCAGGCCCTGTGGGCCTCCCTGGAT
ATCCAGGTCTGAAAGGTGAACTGGGAGAAGTGGGGCCACAGGGCCCCCGAGGATTACAGGGCCC
TCCTGGGCCTCCTGGACGGGAAGGCAAGACAGGCCGAGCTGGAGCAGATGGGGCTCGGGGGCTC
CCGGGAGACACAGGACCTAAGGGTGACAGGGGCTTTGATGGCCTGCCCGGGCTGCCTGGTGAGA
AGGGCCAAAGGGGTGACTTTGGACGAGTAGGGCAACCTGGTCCCCCAGGAGAGGATGGTGTAAA
GGGCCTGCAGGGACCTCCAGGGCCCACTGGCCAGGCTGGAGAGCCGGGTCCCCGAGGTCTGATT
GGCCCCAGAGGTCTCCCAGGTCCCCTAGGACGCCCGGGTGTGACAGGGAGTGATGGCGCACCAG
GGGCCAAAGGCAACGTGGGTCCTCCTGGAGAACCAGGACCCCCAGGACAGCAAGGAAACCACGG
CTCCCAGGGAATTCCAGGCCCCCAGGGGCCCATTGGCACTCCCGGGGAAAAGGGTCCCCCTGGA
AACCCCGGAATTCCAGGTGTCCCAGGATCTGAGGGCCCCCCGGGCCACCCAGGCCACGAGGGTC
CCACAGGAGAAAAAGGGGCTCAGGGCCCACCAGGATCAGCAGGCCCTCGGGGCTATCCTGGACT
TCGTGGTGTGAAGGGTACCTCTGGTAACCGGGGTCTCCAAGGCGAGAAAGGAGAAAGGGGAGAG
GATGGCTTTCCTGGCTTCAAGGGTGATGAGGGACCAAAAGGCGACCGGGGAAACCCCGGACCCC
CAGGTCCCAGAGGAGAGGATGGTCCAGAAGGACAAAAGGGGCCTGGGGGACTGCCTGGTGATGA
GGGTCCTCCAGGAGCAGCAGGGGAGAAGGGCAAGCTTGGGGTGCCAGGTCTCCCAGGTTATCCA
GGACGCCCAGGACCTAAGGGATCTATTGGATTTCCTGGACCCTTGGGACCACTGGGGGAGAAAG
GCAAGCGGGGCAAAGCAGGACAGCCAGGAGAGGAAGGAGAACGCGGCACACCGGGCACCCGAGG
AGACAGGGGACAGCCGGGGGCCACAGGCCAGCCTGGCCCCAAGGGTGACGTGGGCCAGAATGGG
TCTCCTGGGCCCCCTGGAGAAAAGGGTCTACCCGGTCTTCAAGGCCCACCAGGATTCCCCGGAC
CAAAAGGCCCCCCGGGTCCTCAGGGGAAAGATGGGATATCTGGGCACCCTGGACAAAGAGGAGA
ATTGGGCTTCCAAGGTCTGACAGGCCCCCCTGGACCAGCTGGCGTCCTTGGTCCTCAGGGAAAG
GTAGGGGACGTGGGGCCTCTAGGCGAGAGAGGCCCCCCAGGGCCTCCTGGACCTCCTGGTGAAC
AAGGTCTGCCAGGCATAGAAGGCAGAGAAGGGGCCAAGGGTGAGCTAGGACCCCTGGGGTCCGT
CGGGAAGGAGGGGCCACCTGGGCCCAGGGGCTTCCCTGGCCCCCAAGGAGCCCCCGGAGACCCA
GGACCCATTGGTTTGAAGGGTGACAAAGGTCCCCCAGGCCCTGTTGGGGCAAATGGCTCCCCGG
GAGAGCGTGGTCCTGTAGGCCCCTCTGGTGGCATTGGGCTTCCTGGCCAGAGTGGAGGGCAAGG
CCCTATTGGTCCTGCTGGCGAGAAGGGGTCCCCGGGAGAACGGGGTACTCCTGGTCCTACTGGC
AAAGATGGTATTCCAGGACCCCCGGGGCTTCAGGGCCCCTCTGGAGCTGCGGGGCCTTCTGGGG
AAGAAGGAGACAAGGGGGAAGTAGGGATGCCTGGTCACAAAGGAAGCAAAGGGGATAAAGGAGA
TGCAGGCCCACCTGGACCAACAGGAATAAGAGGTCCAGCAGGCCATTCAGGCCTCCCGGGTGCT
GATGGCGCTCAGGGTCGCCGGGGACCCCCTGGCCTCTTCGGGCAGAAGGGGGATGACGGAGTTC
GAGGCTTTGTAGGTGTAATTGGTCCTCCAGGTCTGCAGGGGCTGCCGGGTCCTCCGGGGGAGAA
GGGCGAGGTTGGAGACGTAGGATCCATGGGTCCACATGGAGCTCCAGGCCCTCGGGGTCCCCCT
GGGCCCAGTGGATCAGAGGGCCCCCCAGGTCTGCCTGGAGGAGTAGGACAGCCTGGTGCTGTGG
GCGAGAAGGGTGAGCCAGGGGATGCTGGAGACGCCGGACCCCCAGGAATTCCCGGCATCCCTGG
GCCCAAAGGTGAAATTGGTGAAAAGGGGGATTCGGGTCCATCAGGGGCTGCTGGTCCCCCAGGC
AAGAAAGGACCCCCAGGAGAGGACGGCTCTAAGGGGAACATGGGTCCCACAGGACTCCCTGGAG
ATCTAGGGCCCCCAGGAGACCCTGGAGTTCCGGGTATTGATGGCATCCCAGGGGAGAAGGGAAA
TGCTGGTGATATTGGGGGACCGGGGCCACCTGGAGCTTCCGGGGAACCTGGTGCCCGTGGCCTC
CCTGGCAAGAGGGGTTCCCCTGGCCGCATGGGTCCAGAAGGAAGAGAGGGCGAGAAAGGCGCCA
AGGGAGATGCTGGTCCTGATGGACCCCCAGGCAGGACAGGCCCCATTGGGGCTCGAGGGCCCCC
TGGACGAATTGGGCCTGATGGTCTTCCAGGGATCCCTGGTCCTGTGGGTGAACCAGGTCTCCTG
GGACCTCCTGGGCTAATCGGCCCTCCAGGGCCCCTGGGCCCACCTGGCCTCCCTGGCCTGAAGG
GAGATGCTGGCCCCAAGGGGGAGAAGGGCCACATTGGGCTAATAGGCCTCATTGGTCCCCCAGG
GGAGGCCGGTGAGAAAGGCGATCAGGGGTTGCCAGGTGTGCAGGGCCCCCCAGGCCTTCAGGGA
GACCCTGGTCTCCCTGGTCCTGTTGGCTCGTTAGGTCACCCTGGGCCCCCAGGTGTGGTGGGCC
CTCTGGGACAGAAGGGCTCCAAAGGGTCCCCGGGATCTCTTGGTCCTCGTGGAGACCCTGGACC
AGCGGGTCCTCCTGGTCCCCCGGGTTCTCCGGCTGAGGTGCATGGCCTGCGCAGGCGCCGATCT
GTGACGGACACCCTGGAAGGTGGCCTGGAGGAGGTGATGGCCTCACTGAATTCACTGAGCTTGG
AGCTGCAGCAGTTGCAGAGACCTCTGGGCACAGCCGAGAGCCCAGGCCTCATGTGCCGAGAGCT
TCACCGCGACCACCCACACCTGCCCGATGGAGAGTACTGGATTGACCCCAATCAGGGCTGTGCA
CGTGACGCCTTCAAGGTTTTCTGCAACTTCACGGCAGGAGGTGAGACCTGTCTCTATCCAGACA
AGAAGTTTGAGACGGTGAAACTGGCCTCGTGGTCCCGAGAGAAGCCTGGAGGCTGGTACAGCAC
CTTCCGCCGAGGGAAGAAGTTCTCCTATGTGGATGCTGATGGCTCCCCGGTGAATGTGGTCCAG
TTGACCTTCCTGAAGTTGTTGAGTGCTGCAGCCCATCAGAGGTTCACTTACATCTGCCAGAACT
CGGTGGCATGGCTGGATGAAGCTGCGGGTGACCACAGGCACTCCATCCGCTTCCAAGGGACCAA
CTGGGAAGAGTTGTCCTTCAACCAGACAACAGCAGCTACCATCAAGGTCTCCCATGATGGCTGT
CGGGTCCGGAAGGGACAGGCGAAGACCCTCTTTGAATTCAGCTCTTCTGTGGGTTTCCTGCCTC
TGTGGGATGTGGCTGCCTCTGACTTTGGTCAGACGAACCAAAAGTTTGGGTTTGAACTCGGCTC
CATCTGCTTTAGCAGCTGAAGTTGTGAGGTGGGAAGGAAGCTGAAGGGAGCCCCACATGGGCTC
CTTGGTGCTGAGGCTCTGAGGCCATTCTGTTTATCCCCAGGGACTCCAGATCCAGGGTCACGTG
ACTCTGACTATTCTTTCTCCCTTGTAGGGGGAGAGTGTGGAGAGCCCAGCTCCCTCTGTCTGTT
CACCCCAGGTGGTATACCCAGTTGTCTGCTAGCTCCCCCCTCCATCCAACTGTCCATTGTCCAC
CTCACCCCCAGACCTCCATGCAGTAGACTTTTAACTCAGAGCTGGTGAAGCCCCACCCCTGCCT
CTCCACCCCTCCACCAGGCCTTTTGGTGCTATTCCTTTCCATAGTTGAGCACTGGATACCTCCT
GATCCCTGCCTGGGACCCTTCCCTCGCATACTTCTTCTTTCTTTGAGTAAAAGAAGTAAAGCAA
GATCAAAGGGGGCGCCCTCCCTGAGCTGCGCCTTCCTTCTGCTTCCTTGACCCAGTGCTGCACA
ATCTCCTCTCCCTACTCTGCCCCACTCCTGTGCCCCCAAGCCTTCAGGGGACCAAGATGTTGGG
CATAAATCAGGATCCTACATGGTGCTGCCCTGCTCATAACTGGGAACTGTATGAAAGGGGGAAT
GAATGGTCTGTGGTCTATTTAATTTGCTTCCTTCTGAAGGAAGTCTGGGGTACGGTGAGAGATT
CCAGAAGGATCTGTACCCTCCCTTACCTACGCGGCTCTCCTCCCCAGGACACAGGGCAAAATCG
CCATCTCAAGAATAAACCAAGGAACTGTGAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_016919 ⟹ NP_058615

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	20,681,353 - 20,726,363 (-)	NCBI
GRCm38	9	20,770,057 - 20,815,067 (-)	NCBI
MGSCv37	9	20,574,494 - 20,619,478 (-)	RGD
Celera	9	18,038,765 - 18,083,744 (-)	RGD
cM Map	9		ENTREZGENE

Sequence:

show sequence

GGGGTCTCGGGCAGTCTCCAGCAGATCCTCACAGCCTCCGGCTGTCCAGAGTGACTGCTCCCAG
GAAGACCAGTCCACATCCCCCTTGGCCTTGGTGCACCAGGCCCCGCTGGGATGAGAAGCTGCCG
GAGACTGGATCAGCTTCAGGCCGGCCTCTGCCTGCTCCTGGCCTCCCTGCAGCTCGTGTCCTGG
ACGCTGGCTGCAGAACCTGTGGACGTACTGGAAGCCTGGGGTGTGCATAGAGACCAGGCTGGGG
TGGCTGAAGGGCCTGGCTTCTGCCCCCTGAGGATTCCACAGGGTGACCGAGCATTCAGGGTGGG
CAAGTCCAGCCTTCTCAGTGTCCCCACGTGGCAGCTCTTCCCAGATGGGCATTTTCCTGAGAAC
TTTTCTGTGCTGCTCACACTGAGGGCCCAGCCAGCCAATCAGTCTGTCCTTCTGTCTATTTATG
ATGAGAAGGGTGTCCGGCAGCTGGGGCTGGCACTGGGGCCAGCTCTGGGCCTCCTTGGTGACTC
CTTCAGGCCCCTCCCCAAGCAAGTCAACATTATGGATGGCAGGTGGCACCGTGTGGCAGTCAGC
ATCAGTGGTAACAAGGTGACCCTGGTGGTTGACTGTGAACCGCAGCCCCCAACATTTGGTCAGG
GGCCTCGGTTTATAAGTACAGCTGGACTCACTGTGATGGGAACCCAGGACACCAGGGAAGAGTC
TTTTGAGGGAGACATCCAGGAGCTGCTGTTAATTCCAGACCCTCAGGCTGCCTTCCAGGCCTGT
GAGAGCTACCTCCCTGGTTGTGAAACCCTCGATTCCACAACCACAGGGGCCCCCAAAGACGATG
AACCAGAAACCCCTGCCCCTCGTCGTCGAAAGGGCAAAGGGAAGAAAAAAGGGCGGGGTCGAAA
GGGCAAGGGAAGAAAGAAAAACAAGGAGACCTCAGAGCTGAGTCCGACCCCTGGTGCCCCTGAG
AACCAGACCTCCCTCCACATCCCTGAGACAGAGAAGACAGTTCCCCACCTGCCTCTGACTCCCA
CACCTCTGGCCATCACCACCACTGTCACGATTGGACAAAATGCCACAGTCTCGCAGGGGTTGGA
CTCCGGTACTGAAACCGAGCAGACGACTCCAGAGGTGGACTCTACTGAGGAGGGTGAAGGAGGT
GGCCCCACCATGGGCCCCAAGTTCCGGGCAGCAGAGCAGTCCTTACAGACTGAGTTCCAGATCT
TTCCTGGTGCTGGAGAAAAGGGAGCGAAAGGAGAGCCTGCGACAGTAGAGCAGGGACAGCAGTT
TGAGGGGCCTGCAGGAGCTCCAGGACCCCGGGGAATATCTGGTCCTTCAGGCCCTCCTGGGCCT
CCGGGCTTCCCTGGGGACCGTGGTCTACCGGGTCCTGCCGGCCTCCCAGGAATCCCAGGCATCG
ATGGAGCCCGGGGCCTGCCGGGCACAGTGATTATGATGCCGTTCCATTTTGCAAGCAGCTCGAT
GAAGGGACCCCCAGTGTCCTTCCAGCAGGCCCAGGCCCAGGCAGTATTGCAACAGGCTCAGCTG
TCCATGAAAGGGCCCCCTGGTCCAGTAGGGCTCACTGGGCGCCCAGGCCCTGTGGGCCTCCCTG
GATATCCAGGTCTGAAAGGTGAACTGGGAGAAGTGGGGCCACAGGGCCCCCGAGGATTACAGGG
CCCTCCTGGGCCTCCTGGACGGGAAGGCAAGACAGGCCGAGCTGGAGCAGATGGGGCTCGGGGG
CTCCCGGGAGACACAGGACCTAAGGGTGACAGGGGCTTTGATGGCCTGCCCGGGCTGCCTGGTG
AGAAGGGCCAAAGGGGTGACTTTGGACGAGTAGGGCAACCTGGTCCCCCAGGAGAGGATGGTGT
AAAGGGCCTGCAGGGACCTCCAGGGCCCACTGGCCAGGCTGGAGAGCCGGGTCCCCGAGGTCTG
ATTGGCCCCAGAGGTCTCCCAGGTCCCCTAGGACGCCCGGGTGTGACAGGGAGTGATGGCGCAC
CAGGGGCCAAAGGCAACGTGGGTCCTCCTGGAGAACCAGGACCCCCAGGACAGCAAGGAAACCA
CGGCTCCCAGGGAATTCCAGGCCCCCAGGGGCCCATTGGCACTCCCGGGGAAAAGGGTCCCCCT
GGAAACCCCGGAATTCCAGGTGTCCCAGGATCTGAGGGCCCCCCGGGCCACCCAGGCCACGAGG
GTCCCACAGGAGAAAAAGGGGCTCAGGGCCCACCAGGATCAGCAGGCCCTCGGGGCTATCCTGG
ACTTCGTGGTGTGAAGGGTACCTCTGGTAACCGGGGTCTCCAAGGCGAGAAAGGAGAAAGGGGA
GAGGATGGCTTTCCTGGCTTCAAGGGTGATGAGGGACCAAAAGGCGACCGGGGAAACCCCGGAC
CCCCAGGTCCCAGAGGAGAGGATGGTCCAGAAGGACAAAAGGGGCCTGGGGGACTGCCTGGTGA
TGAGGGTCCTCCAGGAGCAGCAGGGGAGAAGGGCAAGCTTGGGGTGCCAGGTCTCCCAGGTTAT
CCAGGACGCCCAGGACCTAAGGGATCTATTGGATTTCCTGGACCCTTGGGACCACTGGGGGAGA
AAGGCAAGCGGGGCAAAGCAGGACAGCCAGGAGAGGAAGGAGAACGCGGCACACCGGGCACCCG
AGGAGACAGGGGACAGCCGGGGGCCACAGGCCAGCCTGGCCCCAAGGGTGACGTGGGCCAGAAT
GGGTCTCCTGGGCCCCCTGGAGAAAAGGGTCTACCCGGTCTTCAAGGCCCACCAGGATTCCCCG
GACCAAAAGGCCCCCCGGGTCCTCAGGGGAAAGATGGGATATCTGGGCACCCTGGACAAAGAGG
AGAATTGGGCTTCCAAGGTCTGACAGGCCCCCCTGGACCAGCTGGCGTCCTTGGTCCTCAGGGA
AAGGTAGGGGACGTGGGGCCTCTAGGCGAGAGAGGCCCCCCAGGGCCTCCTGGACCTCCTGGTG
AACAAGGTCTGCCAGGCATAGAAGGCAGAGAAGGGGCCAAGGGTGAGCTAGGACCCCTGGGGTC
CGTCGGGAAGGAGGGGCCACCTGGGCCCAGGGGCTTCCCTGGCCCCCAAGGAGCCCCCGGAGAC
CCAGGACCCATTGGTTTGAAGGGTGACAAAGGTCCCCCAGGCCCTGTTGGGGCAAATGGCTCCC
CGGGAGAGCGTGGTCCTGTAGGCCCCTCTGGTGGCATTGGGCTTCCTGGCCAGAGTGGAGGGCA
AGGCCCTATTGGTCCTGCTGGCGAGAAGGGGTCCCCGGGAGAACGGGGTACTCCTGGTCCTACT
GGCAAAGATGGTATTCCAGGACCCCCGGGGCTTCAGGGCCCCTCTGGAGCTGCGGGGCCTTCTG
GGGAAGAAGGAGACAAGGGGGAAGTAGGGATGCCTGGTCACAAAGGAAGCAAAGGGGATAAAGG
AGATGCAGGCCCACCTGGACCAACAGGAATAAGAGGTCCAGCAGGCCATTCAGGCCTCCCGGGT
GCTGATGGCGCTCAGGGTCGCCGGGGACCCCCTGGCCTCTTCGGGCAGAAGGGGGATGACGGAG
TTCGAGGCTTTGTAGGTGTAATTGGTCCTCCAGGTCTGCAGGGGCTGCCGGGTCCTCCGGGGGA
GAAGGGCGAGGTTGGAGACGTAGGATCCATGGGTCCACATGGAGCTCCAGGCCCTCGGGGTCCC
CCTGGGCCCAGTGGATCAGAGGGCCCCCCAGGTCTGCCTGGAGGAGTAGGACAGCCTGGTGCTG
TGGGCGAGAAGGGTGAGCCAGGGGATGCTGGAGACGCCGGACCCCCAGGAATTCCCGGCATCCC
TGGGCCCAAAGGTGAAATTGGTGAAAAGGGGGATTCGGGTCCATCAGGGGCTGCTGGTCCCCCA
GGCAAGAAAGGACCCCCAGGAGAGGACGGCTCTAAGGGGAACATGGGTCCCACAGGACTCCCTG
GAGATCTAGGGCCCCCAGGAGACCCTGGAGTTCCGGGTATTGATGGCATCCCAGGGGAGAAGGG
AAATGCTGGTGATATTGGGGGACCGGGGCCACCTGGAGCTTCCGGGGAACCTGGTGCCCGTGGC
CTCCCTGGCAAGAGGGGTTCCCCTGGCCGCATGGGTCCAGAAGGAAGAGAGGGCGAGAAAGGCG
CCAAGGGAGATGCTGGTCCTGATGGACCCCCAGGCAGGACAGGCCCCATTGGGGCTCGAGGGCC
CCCTGGACGAATTGGGCCTGATGGTCTTCCAGGGATCCCTGGTCCTGTGGGTGAACCAGGTCTC
CTGGGACCTCCTGGGCTAATCGGCCCTCCAGGGCCCCTGGGCCCACCTGGCCTCCCTGGCCTGA
AGGGAGATGCTGGCCCCAAGGGGGAGAAGGGCCACATTGGGCTAATAGGCCTCATTGGTCCCCC
AGGGGAGGCCGGTGAGAAAGGCGATCAGGGGTTGCCAGGTGTGCAGGGCCCCCCAGGCCTTCAG
GGAGACCCTGGTCTCCCTGGTCCTGTTGGCTCGTTAGGTCACCCTGGGCCCCCAGGTGTGGTGG
GCCCTCTGGGACAGAAGGGCTCCAAAGGGTCCCCGGGATCTCTTGGTCCTCGTGGAGACCCTGG
ACCAGCGGGTCCTCCTGGTCCCCCGGGTTCTCCGGCTGAGGTGCATGGCCTGCGCAGGCGCCGA
TCTGTGACGGACACCCTGGAAGGTGGCCTGGAGGAGGTGATGGCCTCACTGAATTCACTGAGCT
TGGAGCTGCAGCAGTTGCAGAGACCTCTGGGCACAGCCGAGAGCCCAGGCCTCATGTGCCGAGA
GCTTCACCGCGACCACCCACACCTGCCCGATGGAGAGTACTGGATTGACCCCAATCAGGGCTGT
GCACGTGACGCCTTCAAGGTTTTCTGCAACTTCACGGCAGGAGGTGAGACCTGTCTCTATCCAG
ACAAGAAGTTTGAGACGGTGAAACTGGCCTCGTGGTCCCGAGAGAAGCCTGGAGGCTGGTACAG
CACCTTCCGCCGAGGGAAGAAGTTCTCCTATGTGGATGCTGATGGCTCCCCGGTGAATGTGGTC
CAGTTGACCTTCCTGAAGTTGTTGAGTGCTGCAGCCCATCAGAGGTTCACTTACATCTGCCAGA
ACTCGGTGGCATGGCTGGATGAAGCTGCGGGTGACCACAGGCACTCCATCCGCTTCCAAGGGAC
CAACTGGGAAGAGTTGTCCTTCAACCAGACAACAGCAGCTACCATCAAGGTCTCCCATGATGGC
TGTCGGGTCCGGAAGGGACAGGCGAAGACCCTCTTTGAATTCAGCTCTTCTGTGGGTTTCCTGC
CTCTGTGGGATGTGGCTGCCTCTGACTTTGGTCAGACGAACCAAAAGTTTGGGTTTGAACTCGG
CTCCATCTGCTTTAGCAGCTGAAGTTGTGAGGTGGGAAGGAAGCTGAAGGGAGCCCCACATGGG
CTCCTTGGTGCTGAGGCTCTGAGGCCATTCTGTTTATCCCCAGGGACTCCAGATCCAGGGTCAC
GTGACTCTGACTATTCTTTCTCCCTTGTAGGGGGAGAGTGTGGAGAGCCCAGCTCCCTCTGTCT
GTTCACCCCAGGTGGTATACCCAGTTGTCTGCTAGCTCCCCCCTCCATCCAACTGTCCATTGTC
CACCTCACCCCCAGACCTCCATGCAGTAGACTTTTAACTCAGAGCTGGTGAAGCCCCACCCCTG
CCTCTCCACCCCTCCACCAGGCCTTTTGGTGCTATTCCTTTCCATAGTTGAGCACTGGATACCT
CCTGATCCCTGCCTGGGACCCTTCCCTCGCATACTTCTTCTTTCTTTGAGTAAAAGAAGTAAAG
CAAGATCAAAGGGGGCGCCCTCCCTGAGCTGCGCCTTCCTTCTGCTTCCTTGACCCAGTGCTGC
ACAATCTCCTCTCCCTACTCTGCCCCACTCCTGTGCCCCCAAGCCTTCAGGGGACCAAGATGTT
GGGCATAAATCAGGATCCTACATGGTGCTGCCCTGCTCATAACTGGGAACTGTATGAAAGGGGG
AATGAATGGTCTGTGGTCTATTTAATTTGCTTCCTTCTGAAGGAAGTCTGGGGTACGGTGAGAG
ATTCCAGAAGGATCTGTACCCTCCCTTACCTACGCGGCTCTCCTCCCCAGGACACAGGGCAAAA
TCGCCATCTCAAGAATAAACCAAGGAACTGTGAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001304317	(Get FASTA)	NCBI Sequence Viewer
	NP_058615	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF59901	(Get FASTA)	NCBI Sequence Viewer
	AAH24367	(Get FASTA)	NCBI Sequence Viewer
	AAI38418	(Get FASTA)	NCBI Sequence Viewer
	AAI38420	(Get FASTA)	NCBI Sequence Viewer
	BAB68504	(Get FASTA)	NCBI Sequence Viewer
	EDL25129	(Get FASTA)	NCBI Sequence Viewer
	EDL25130	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000004201
	ENSMUSP00000004201.8

RefSeq Acc Id:	NP_058615 ⟸ NM_016919
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q9JLI2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSCRRLDQLQAGLCLLLASLQLVSWTLAAEPVDVLEAWGVHRDQAGVAEGPGFCPLRIPQGDR AFRVGKSSLLSVPTWQLFPDGHFPENFSVLLTLRAQPANQSVLLSIYDEKGVRQLGLALGPALG LLGDSFRPLPKQVNIMDGRWHRVAVSISGNKVTLVVDCEPQPPTFGQGPRFISTAGLTVMGTQD TREESFEGDIQELLLIPDPQAAFQACESYLPGCETLDSTTTGAPKDDEPETPAPRRRKGKGKKK GRGRKGKGRKKNKETSELSPTPGAPENQTSLHIPETEKTVPHLPLTPTPLAITTTVTIGQNATV SQGLDSGTETEQTTPEVDSTEEGEGGGPTMGPKFRAAEQSLQTEFQIFPGAGEKGAKGEPATVE QGQQFEGPAGAPGPRGISGPSGPPGPPGFPGDRGLPGPAGLPGIPGIDGARGLPGTVIMMPFHF ASSSMKGPPVSFQQAQAQAVLQQAQLSMKGPPGPVGLTGRPGPVGLPGYPGLKGELGEVGPQGP RGLQGPPGPPGREGKTGRAGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGRVGQPGPP GEDGVKGLQGPPGPTGQAGEPGPRGLIGPRGLPGPLGRPGVTGSDGAPGAKGNVGPPGEPGPPG QQGNHGSQGIPGPQGPIGTPGEKGPPGNPGIPGVPGSEGPPGHPGHEGPTGEKGAQGPPGSAGP RGYPGLRGVKGTSGNRGLQGEKGERGEDGFPGFKGDEGPKGDRGNPGPPGPRGEDGPEGQKGPG GLPGDEGPPGAAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPLGEKGKRGKAGQPGEEGERG TPGTRGDRGQPGATGQPGPKGDVGQNGSPGPPGEKGLPGLQGPPGFPGPKGPPGPQGKDGISGH PGQRGELGFQGLTGPPGPAGVLGPQGKVGDVGPLGERGPPGPPGPPGEQGLPGIEGREGAKGEL GPLGSVGKEGPPGPRGFPGPQGAPGDPGPIGLKGDKGPPGPVGANGSPGERGPVGPSGGIGLPG QSGGQGPIGPAGEKGSPGERGTPGPTGKDGIPGPPGLQGPSGAAGPSGEEGDKGEVGMPGHKGS KGDKGDAGPPGPTGIRGPAGHSGLPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLP GPPGEKGEVGDVGSMGPHGAPGPRGPPGPSGSEGPPGLPGGVGQPGAVGEKGEPGDAGDAGPPG IPGIPGPKGEIGEKGDSGPSGAAGPPGKKGPPGEDGSKGNMGPTGLPGDLGPPGDPGVPGIDGI PGEKGNAGDIGGPGPPGASGEPGARGLPGKRGSPGRMGPEGREGEKGAKGDAGPDGPPGRTGPI GARGPPGRIGPDGLPGIPGPVGEPGLLGPPGLIGPPGPLGPPGLPGLKGDAGPKGEKGHIGLIG LIGPPGEAGEKGDQGLPGVQGPPGLQGDPGLPGPVGSLGHPGPPGVVGPLGQKGSKGSPGSLGP RGDPGPAGPPGPPGSPAEVHGLRRRRSVTDTLEGGLEEVMASLNSLSLELQQLQRPLGTAESPG LMCRELHRDHPHLPDGEYWIDPNQGCARDAFKVFCNFTAGGETCLYPDKKFETVKLASWSREKP GGWYSTFRRGKKFSYVDADGSPVNVVQLTFLKLLSAAAHQRFTYICQNSVAWLDEAAGDHRHSI RFQGTNWEELSFNQTTAATIKVSHDGCRVRKGQAKTLFEFSSSVGFLPLWDVAASDFGQTNQKF GFELGSICFSS hide sequence

RefSeq Acc Id:	NP_001304317 ⟸ NM_001317388
- Peptide Label:	isoform 2 precursor
- UniProtKB:	Q9JLI2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSCRRLDQLQAGLCLLLASLQLVSWTLAEPVDVLEAWGVHRDQAGVAEGPGFCPLRIPQGDRA FRVGKSSLLSVPTWQLFPDGHFPENFSVLLTLRAQPANQSVLLSIYDEKGVRQLGLALGPALGL LGDSFRPLPKQVNIMDGRWHRVAVSISGNKVTLVVDCEPQPPTFGQGPRFISTAGLTVMGTQDT REESFEGDIQELLLIPDPQAAFQACESYLPGCETLDSTTTGAPKDDEPETPAPRRRKGKGKKKG RGRKGKGRKKNKETSELSPTPGAPENQTSLHIPETEKTVPHLPLTPTPLAITTTVTIGQNATVS QGLDSGTETEQTTPEVDSTEEGEGGGPTMGPKFRAAEQSLQTEFQIFPGAGEKGAKGEPATVEQ GQQFEGPAGAPGPRGISGPSGPPGPPGFPGDRGLPGPAGLPGIPGIDGARGLPGTVIMMPFHFA SSSMKGPPVSFQQAQAQAVLQQAQLSMKGPPGPVGLTGRPGPVGLPGYPGLKGELGEVGPQGPR GLQGPPGPPGREGKTGRAGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGRVGQPGPPG EDGVKGLQGPPGPTGQAGEPGPRGLIGPRGLPGPLGRPGVTGSDGAPGAKGNVGPPGEPGPPGQ QGNHGSQGIPGPQGPIGTPGEKGPPGNPGIPGVPGSEGPPGHPGHEGPTGEKGAQGPPGSAGPR GYPGLRGVKGTSGNRGLQGEKGERGEDGFPGFKGDEGPKGDRGNPGPPGPRGEDGPEGQKGPGG LPGDEGPPGAAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPLGEKGKRGKAGQPGEEGERGT PGTRGDRGQPGATGQPGPKGDVGQNGSPGPPGEKGLPGLQGPPGFPGPKGPPGPQGKDGISGHP GQRGELGFQGLTGPPGPAGVLGPQGKVGDVGPLGERGPPGPPGPPGEQGLPGIEGREGAKGELG PLGSVGKEGPPGPRGFPGPQGAPGDPGPIGLKGDKGPPGPVGANGSPGERGPVGPSGGIGLPGQ SGGQGPIGPAGEKGSPGERGTPGPTGKDGIPGPPGLQGPSGAAGPSGEEGDKGEVGMPGHKGSK GDKGDAGPPGPTGIRGPAGHSGLPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPG PPGEKGEVGDVGSMGPHGAPGPRGPPGPSGSEGPPGLPGGVGQPGAVGEKGEPGDAGDAGPPGI PGIPGPKGEIGEKGDSGPSGAAGPPGKKGPPGEDGSKGNMGPTGLPGDLGPPGDPGVPGIDGIP GEKGNAGDIGGPGPPGASGEPGARGLPGKRGSPGRMGPEGREGEKGAKGDAGPDGPPGRTGPIG ARGPPGRIGPDGLPGIPGPVGEPGLLGPPGLIGPPGPLGPPGLPGLKGDAGPKGEKGHIGLIGL IGPPGEAGEKGDQGLPGVQGPPGLQGDPGLPGPVGSLGHPGPPGVVGPLGQKGSKGSPGSLGPR GDPGPAGPPGPPGSPAEVHGLRRRRSVTDTLEGGLEEVMASLNSLSLELQQLQRPLGTAESPGL MCRELHRDHPHLPDGEYWIDPNQGCARDAFKVFCNFTAGGETCLYPDKKFETVKLASWSREKPG GWYSTFRRGKKFSYVDADGSPVNVVQLTFLKLLSAAAHQRFTYICQNSVAWLDEAAGDHRHSIR FQGTNWEELSFNQTTAATIKVSHDGCRVRKGQAKTLFEFSSSVGFLPLWDVAASDFGQTNQKFG FELGSICFSS hide sequence

Ensembl Acc Id:

ENSMUSP00000004201 ⟸ ENSMUST00000004201

Protein Domains

Fibrillar collagen NC1 Laminin G

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JLI2-F1-model_v2	AlphaFold	Q9JLI2	1-1739	view protein structure

Promoters

RGD ID:

6844347

Promoter ID:

MM_KWN:56526

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day3, MEF_B4, MEF_B6

Transcripts:

OTTMUST00000053292, OTTMUST00000053293

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	9	20,619,186 - 20,619,686 (-)	MPROMDB

RGD ID:

8668890

Promoter ID:

EPDNEW_M12476

Type:

initiation region

Name:

Col5a3_1

Description:

Mus musculus collagen, type V, alpha 3 , transcript variant 1,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	20,815,055 - 20,815,115	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1858212	AgrOrtholog
Ensembl Genes	ENSMUSG00000004098	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000004201	ENTREZGENE
	ENSMUST00000004201.8	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.1000	UniProtKB/TrEMBL
	2.60.120.200	UniProtKB/TrEMBL
InterPro	Collagen	UniProtKB/TrEMBL
	Collagen_superfamily	UniProtKB/TrEMBL
	ConA-like_subgrp	UniProtKB/TrEMBL
	Fib_collagen_C	UniProtKB/TrEMBL
	Laminin_G	UniProtKB/TrEMBL
	TSPN-like_N	UniProtKB/TrEMBL
KEGG Report	mmu:53867	UniProtKB/TrEMBL
MGD	MGI:1858212	ENTREZGENE
NCBI Gene	53867	ENTREZGENE
PANTHER	COLLAGEN ALPHA	UniProtKB/TrEMBL
	COLLAGEN ALPHA-1(XXVII) CHAIN A	UniProtKB/TrEMBL
	COLLAGEN ALPHA-3(V) CHAIN	UniProtKB/TrEMBL
Pfam	COLFI	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
	Laminin_G_2	UniProtKB/TrEMBL
PhenoGen	Col5a3	PhenoGen
PROSITE	LAM_G_DOMAIN	UniProtKB/TrEMBL
	NC1_FIB	UniProtKB/TrEMBL
SMART	COLFI	UniProtKB/TrEMBL
	TSPN	UniProtKB/TrEMBL
Superfamily-SCOP	ConA_like_lec_gl	UniProtKB/TrEMBL
UniProt	A1A4B3_MOUSE	UniProtKB/TrEMBL
	Q920S4_MOUSE	UniProtKB/TrEMBL
	Q9JLI2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Mammalian Phenotype