GLP2R (glucagon like peptide 2 receptor) - Rat Genome Database

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Gene: GLP2R (glucagon like peptide 2 receptor) Homo sapiens
Analyze
Symbol: GLP2R
Name: glucagon like peptide 2 receptor
RGD ID: 731561
HGNC Page HGNC:4325
Description: Predicted to enable glucagon receptor activity and peptide hormone binding activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: GLP-2 receptor; GLP-2-R; GLP-2R; glucagon-like peptide 2 receptor
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38179,825,924 - 9,892,099 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl179,822,206 - 9,892,099 (+)EnsemblGRCh38hg38GRCh38
GRCh37179,729,241 - 9,795,416 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36179,670,106 - 9,733,747 (+)NCBINCBI36Build 36hg18NCBI36
Build 34179,670,105 - 9,733,747NCBI
Celera179,760,703 - 9,824,336 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef179,629,750 - 9,693,383 (+)NCBIHuRef
CHM1_1179,739,411 - 9,803,035 (+)NCBICHM1_1
T2T-CHM13v2.0179,733,669 - 9,799,834 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA,TAS)
plasma membrane  (IBA,IEA,TAS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Prototypic G protein-coupled receptor for the intestinotrophic factor glucagon-like peptide 2. Munroe DG, etal., Proc Natl Acad Sci U S A 1999 Feb 16;96(4):1569-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10982769   PMID:11238747   PMID:11738243   PMID:12477932   PMID:15471943   PMID:15544847   PMID:15670850   PMID:15817468   PMID:16401478   PMID:16448646   PMID:18240029   PMID:18829546  
PMID:19861958   PMID:19913121   PMID:20379614   PMID:20468064   PMID:20628086   PMID:20800603   PMID:21167157   PMID:21326311   PMID:21873635   PMID:22951144   PMID:24875097   PMID:24990862  
PMID:28337026   PMID:28514806   PMID:28700943   PMID:28746825   PMID:30409537   PMID:31391242   PMID:32191643   PMID:33239759   PMID:33544567   PMID:34174312  


Genomics

Comparative Map Data
GLP2R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38179,825,924 - 9,892,099 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl179,822,206 - 9,892,099 (+)EnsemblGRCh38hg38GRCh38
GRCh37179,729,241 - 9,795,416 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36179,670,106 - 9,733,747 (+)NCBINCBI36Build 36hg18NCBI36
Build 34179,670,105 - 9,733,747NCBI
Celera179,760,703 - 9,824,336 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef179,629,750 - 9,693,383 (+)NCBIHuRef
CHM1_1179,739,411 - 9,803,035 (+)NCBICHM1_1
T2T-CHM13v2.0179,733,669 - 9,799,834 (+)NCBIT2T-CHM13v2.0
Glp2r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391167,554,877 - 67,661,979 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1167,552,328 - 67,661,979 (-)EnsemblGRCm39 Ensembl
GRCm381167,664,156 - 67,771,184 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,661,502 - 67,771,153 (-)EnsemblGRCm38mm10GRCm38
MGSCv371167,519,932 - 67,584,655 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,522,625 - 67,587,348 (-)NCBIMGSCv36mm8
MGSCv361168,292,730 - 68,351,279 (-)NCBIMGSCv36mm8
Celera1174,649,125 - 74,715,011 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1141.13NCBI
Glp2r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81052,901,707 - 52,964,961 (-)NCBIGRCr8
mRatBN7.21052,402,748 - 52,466,012 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1052,402,748 - 52,466,012 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1057,060,278 - 57,128,159 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01056,549,284 - 56,617,168 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01052,059,289 - 52,122,389 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01054,260,290 - 54,323,839 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1054,260,290 - 54,323,439 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01054,006,866 - 54,070,157 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41054,423,127 - 54,487,060 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11054,436,749 - 54,500,683 (-)NCBI
Celera1051,583,978 - 51,647,093 (-)NCBICelera
Cytogenetic Map10q24NCBI
Glp2r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554677,242,180 - 7,296,713 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554677,239,547 - 7,308,809 (-)NCBIChiLan1.0ChiLan1.0
GLP2R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21963,858,957 - 63,925,236 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11768,665,619 - 68,734,758 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01741,764,686 - 41,830,966 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11746,508,568 - 46,574,695 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1746,508,568 - 46,574,695 (-)Ensemblpanpan1.1panPan2
GLP2R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1534,267,270 - 34,317,525 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl534,266,966 - 34,318,472 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha534,403,170 - 34,454,055 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0534,371,193 - 34,421,655 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl534,371,032 - 34,421,253 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1534,336,983 - 34,387,401 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0534,295,062 - 34,345,268 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0534,475,553 - 34,525,955 (+)NCBIUU_Cfam_GSD_1.0
Glp2r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560249,313,268 - 49,393,453 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365952,787,963 - 2,868,051 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365952,787,978 - 2,868,033 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLP2R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1254,680,057 - 54,738,102 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11254,680,047 - 54,747,338 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21257,438,490 - 57,493,322 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLP2R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1169,161,241 - 9,228,965 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl169,162,107 - 9,227,581 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605912,112,708 - 12,181,573 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glp2r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478612,260,029 - 12,324,632 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478612,260,029 - 12,325,838 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GLP2R
44 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17p13.1(chr17:7750804-10112969)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052460]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052460]|See cases [RCV000052460] Chr17:7750804..10112969 [GRCh38]
Chr17:7654122..10016286 [GRCh37]
Chr17:7594847..9957011 [NCBI36]
Chr17:17p13.1
pathogenic
GRCh38/hg38 17p13.2-12(chr17:5732953-12095349)x3 copy number gain See cases [RCV000134851] Chr17:5732953..12095349 [GRCh38]
Chr17:5636273..11998666 [GRCh37]
Chr17:5576997..11939391 [NCBI36]
Chr17:17p13.2-12
pathogenic
GRCh38/hg38 17p13.3-12(chr17:162016-12343901)x3 copy number gain See cases [RCV000138531] Chr17:162016..12343901 [GRCh38]
Chr17:45835..12247218 [GRCh37]
Chr17:11807..12187943 [NCBI36]
Chr17:17p13.3-12
pathogenic
GRCh38/hg38 17p13.3-12(chr17:150732-14764202)x3 copy number gain See cases [RCV000142236] Chr17:150732..14764202 [GRCh38]
Chr17:525..14667519 [GRCh37]
Chr17:525..14608244 [NCBI36]
Chr17:17p13.3-12
pathogenic
GRCh38/hg38 17p13.1-12(chr17:9701182-11983353)x1 copy number loss Breast ductal adenocarcinoma [RCV000207166] Chr17:9701182..11983353 [GRCh38]
Chr17:9604499..11886670 [GRCh37]
Chr17:17p13.1-12
uncertain significance
Single allele complex Breast ductal adenocarcinoma [RCV000207129] Chr17:9586165..16325968 [GRCh37]
Chr17:17p13.1-11.2
uncertain significance
GRCh37/hg19 17p13.1(chr17:7929776-9995862)x3 copy number gain See cases [RCV000447853] Chr17:7929776..9995862 [GRCh37]
Chr17:17p13.1
uncertain significance
GRCh37/hg19 17p13.1(chr17:9751024-9804265)x3 copy number gain See cases [RCV000448454] Chr17:9751024..9804265 [GRCh37]
Chr17:17p13.1
uncertain significance
GRCh37/hg19 17p13.1(chr17:7431013-9868179)x3 copy number gain See cases [RCV000511388] Chr17:7431013..9868179 [GRCh37]
Chr17:17p13.1
uncertain significance
GRCh37/hg19 17p13.3-12(chr17:525-15027737)x3 copy number gain See cases [RCV000511786] Chr17:525..15027737 [GRCh37]
Chr17:17p13.3-12
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-12(chr17:525-11186432)x3 copy number gain not provided [RCV000683866] Chr17:525..11186432 [GRCh37]
Chr17:17p13.3-12
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
NM_004246.3(GLP2R):c.764A>C (p.Glu255Ala) single nucleotide variant not provided [RCV000972917] Chr17:9857575 [GRCh38]
Chr17:9760892 [GRCh37]
Chr17:17p13.1
benign
NM_004246.3(GLP2R):c.291C>T (p.Asn97=) single nucleotide variant not provided [RCV000965369] Chr17:9836384 [GRCh38]
Chr17:9739701 [GRCh37]
Chr17:17p13.1
benign
NM_004246.3(GLP2R):c.1543G>A (p.Ala515Thr) single nucleotide variant not provided [RCV000973548] Chr17:9889586 [GRCh38]
Chr17:9792903 [GRCh37]
Chr17:17p13.1
benign
NM_004246.3(GLP2R):c.1568G>A (p.Arg523His) single nucleotide variant not provided [RCV000962467] Chr17:9889611 [GRCh38]
Chr17:9792928 [GRCh37]
Chr17:17p13.1
benign
NM_004246.3(GLP2R):c.1414C>T (p.Arg472Trp) single nucleotide variant not provided [RCV000967436] Chr17:9889457 [GRCh38]
Chr17:9792774 [GRCh37]
Chr17:17p13.1
benign
NM_004246.3(GLP2R):c.627G>A (p.Thr209=) single nucleotide variant not provided [RCV000962466] Chr17:9857438 [GRCh38]
Chr17:9760755 [GRCh37]
Chr17:17p13.1
benign
NM_004246.3(GLP2R):c.1565C>A (p.Ala522Glu) single nucleotide variant not specified [RCV004289289] Chr17:9889608 [GRCh38]
Chr17:9792925 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.65A>T (p.His22Leu) single nucleotide variant not provided [RCV000962465] Chr17:9826128 [GRCh38]
Chr17:9729445 [GRCh37]
Chr17:17p13.1
benign
NM_004246.3(GLP2R):c.271C>G (p.Pro91Ala) single nucleotide variant not provided [RCV000910307] Chr17:9833888 [GRCh38]
Chr17:9737205 [GRCh37]
Chr17:17p13.1
benign
NC_000017.11:g.(?_9794928)_(10547930_?)del deletion Myopathy, proximal, and ophthalmoplegia [RCV001032635] Chr17:9698245..10451247 [GRCh37]
Chr17:17p13.1
pathogenic
GRCh37/hg19 17p13.1(chr17:7929776-9995862) copy number gain not specified [RCV002052588] Chr17:7929776..9995862 [GRCh37]
Chr17:17p13.1
uncertain significance
GRCh37/hg19 17p13.1(chr17:9695852-10118691)x3 copy number gain not provided [RCV002472693] Chr17:9695852..10118691 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.1358G>A (p.Arg453His) single nucleotide variant not specified [RCV004136728] Chr17:9889401 [GRCh38]
Chr17:9792718 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.1577G>A (p.Arg526Gln) single nucleotide variant not specified [RCV004172889] Chr17:9889620 [GRCh38]
Chr17:9792937 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.11G>A (p.Gly4Glu) single nucleotide variant not specified [RCV004120339] Chr17:9826074 [GRCh38]
Chr17:9729391 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.583C>G (p.Leu195Val) single nucleotide variant not specified [RCV004153863] Chr17:9854573 [GRCh38]
Chr17:9757890 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.1483C>A (p.Pro495Thr) single nucleotide variant not specified [RCV004129595] Chr17:9889526 [GRCh38]
Chr17:9792843 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.1597T>A (p.Cys533Ser) single nucleotide variant not specified [RCV004116398] Chr17:9889640 [GRCh38]
Chr17:9792957 [GRCh37]
Chr17:17p13.1
likely benign
NM_004246.3(GLP2R):c.1016T>G (p.Ile339Ser) single nucleotide variant not specified [RCV004205435] Chr17:9862050 [GRCh38]
Chr17:9765367 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.67G>A (p.Glu23Lys) single nucleotide variant not specified [RCV004241749] Chr17:9826130 [GRCh38]
Chr17:9729447 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.689T>C (p.Val230Ala) single nucleotide variant not specified [RCV004214179] Chr17:9857500 [GRCh38]
Chr17:9760817 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.1122G>A (p.Met374Ile) single nucleotide variant not specified [RCV004132590] Chr17:9870812 [GRCh38]
Chr17:9774129 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.671G>A (p.Arg224Lys) single nucleotide variant not specified [RCV004100001] Chr17:9857482 [GRCh38]
Chr17:9760799 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.697G>A (p.Val233Ile) single nucleotide variant not specified [RCV004166993] Chr17:9857508 [GRCh38]
Chr17:9760825 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.985G>A (p.Gly329Arg) single nucleotide variant not specified [RCV004271311] Chr17:9861198 [GRCh38]
Chr17:9764515 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.1117C>A (p.Gln373Lys) single nucleotide variant not specified [RCV004284723] Chr17:9870807 [GRCh38]
Chr17:9774124 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.964C>T (p.Arg322Cys) single nucleotide variant not specified [RCV004253453] Chr17:9861177 [GRCh38]
Chr17:9764494 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.1372C>T (p.Arg458Cys) single nucleotide variant not specified [RCV004272056] Chr17:9889415 [GRCh38]
Chr17:9792732 [GRCh37]
Chr17:17p13.1
uncertain significance
GRCh38/hg38 17p13.3-12(chr17:165730-11404096)x3 copy number gain Chromosome 17p13.3 duplication syndrome [RCV003327726] Chr17:165730..11404096 [GRCh38]
Chr17:17p13.3-12
pathogenic
NM_004246.3(GLP2R):c.512G>A (p.Arg171His) single nucleotide variant not specified [RCV004339699] Chr17:9854502 [GRCh38]
Chr17:9757819 [GRCh37]
Chr17:17p13.1
likely benign
GRCh37/hg19 17p13.3-11.2(chr17:525-21510992)x3 copy number gain not specified [RCV003987215] Chr17:525..21510992 [GRCh37]
Chr17:17p13.3-11.2
pathogenic
NM_004246.3(GLP2R):c.31G>A (p.Gly11Arg) single nucleotide variant not specified [RCV004393214] Chr17:9826094 [GRCh38]
Chr17:9729411 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.449C>T (p.Thr150Met) single nucleotide variant not specified [RCV004393216] Chr17:9842561 [GRCh38]
Chr17:9745878 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.893G>A (p.Arg298Gln) single nucleotide variant not specified [RCV004393218] Chr17:9860069 [GRCh38]
Chr17:9763386 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.1373G>A (p.Arg458His) single nucleotide variant not specified [RCV004393212] Chr17:9889416 [GRCh38]
Chr17:9792733 [GRCh37]
Chr17:17p13.1
likely benign
NM_004246.3(GLP2R):c.43G>A (p.Ala15Thr) single nucleotide variant not specified [RCV004393215] Chr17:9826106 [GRCh38]
Chr17:9729423 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.781C>T (p.Arg261Cys) single nucleotide variant not specified [RCV004393217] Chr17:9859957 [GRCh38]
Chr17:9763274 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.1415G>A (p.Arg472Gln) single nucleotide variant not specified [RCV004393213] Chr17:9889458 [GRCh38]
Chr17:9792775 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.1361T>G (p.Phe454Cys) single nucleotide variant not specified [RCV004629757] Chr17:9889404 [GRCh38]
Chr17:9792721 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_004246.3(GLP2R):c.1561C>G (p.His521Asp) single nucleotide variant not specified [RCV004629758] Chr17:9889604 [GRCh38]
Chr17:9792921 [GRCh37]
Chr17:17p13.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2420
Count of miRNA genes:1070
Interacting mature miRNAs:1318
Transcripts:ENST00000262441, ENST00000304773, ENST00000458005, ENST00000574745
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-142190  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37179,768,843 - 9,769,169UniSTSGRCh37
Build 36179,709,568 - 9,709,894RGDNCBI36
Celera179,800,163 - 9,800,489RGD
Cytogenetic Map17p13.3UniSTS
HuRef179,669,191 - 9,669,517UniSTS
TNG Radiation Hybrid Map176093.0UniSTS
GLP2R_7942  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37179,792,696 - 9,793,191UniSTSGRCh37
Build 36179,733,421 - 9,733,916RGDNCBI36
Celera179,824,010 - 9,824,505RGD
HuRef179,693,057 - 9,693,552UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2332 2689 2181 4485 1579 2050 3 551 883 404 1920 5791 5321 15 3571 631 1575 1397 158

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_004246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005256861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017025339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017025340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017025341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054317814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054317815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054317816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054317817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054317818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC026591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF105367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ891498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000262441   ⟹   ENSP00000262441
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl179,825,924 - 9,892,099 (+)Ensembl
Ensembl Acc Id: ENST00000304773   ⟹   ENSP00000303605
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl179,842,485 - 9,860,071 (+)Ensembl
Ensembl Acc Id: ENST00000458005   ⟹   ENSP00000404471
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl179,825,904 - 9,866,977 (+)Ensembl
Ensembl Acc Id: ENST00000574745   ⟹   ENSP00000458242
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl179,822,206 - 9,890,034 (+)Ensembl
RefSeq Acc Id: NM_004246   ⟹   NP_004237
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38179,825,924 - 9,892,099 (+)NCBI
GRCh37179,729,152 - 9,794,269 (+)NCBI
Build 36179,670,106 - 9,733,747 (+)NCBI Archive
HuRef179,629,750 - 9,693,383 (+)ENTREZGENE
CHM1_1179,738,898 - 9,805,432 (+)NCBI
T2T-CHM13v2.0179,733,669 - 9,799,834 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011524077   ⟹   XP_011522379
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38179,825,924 - 9,892,099 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017025339   ⟹   XP_016880828
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38179,825,924 - 9,892,099 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017025340   ⟹   XP_016880829
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38179,825,924 - 9,892,099 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017025341   ⟹   XP_016880830
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38179,825,924 - 9,892,099 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054317814   ⟹   XP_054173789
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0179,733,669 - 9,799,834 (+)NCBI
RefSeq Acc Id: XM_054317815   ⟹   XP_054173790
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0179,733,669 - 9,799,834 (+)NCBI
RefSeq Acc Id: XM_054317816   ⟹   XP_054173791
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0179,733,669 - 9,799,834 (+)NCBI
RefSeq Acc Id: XM_054317817   ⟹   XP_054173792
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0179,733,669 - 9,799,834 (+)NCBI
RefSeq Acc Id: XM_054317818   ⟹   XP_054173793
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0179,741,552 - 9,799,834 (+)NCBI
Protein Sequences
Protein RefSeqs NP_004237 (Get FASTA)   NCBI Sequence Viewer  
  XP_011522379 (Get FASTA)   NCBI Sequence Viewer  
  XP_016880828 (Get FASTA)   NCBI Sequence Viewer  
  XP_016880829 (Get FASTA)   NCBI Sequence Viewer  
  XP_016880830 (Get FASTA)   NCBI Sequence Viewer  
  XP_054173789 (Get FASTA)   NCBI Sequence Viewer  
  XP_054173790 (Get FASTA)   NCBI Sequence Viewer  
  XP_054173791 (Get FASTA)   NCBI Sequence Viewer  
  XP_054173792 (Get FASTA)   NCBI Sequence Viewer  
  XP_054173793 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD16895 (Get FASTA)   NCBI Sequence Viewer  
  AAH19818 (Get FASTA)   NCBI Sequence Viewer  
  AAH41176 (Get FASTA)   NCBI Sequence Viewer  
  AAH43390 (Get FASTA)   NCBI Sequence Viewer  
  AAH96261 (Get FASTA)   NCBI Sequence Viewer  
  AAH96262 (Get FASTA)   NCBI Sequence Viewer  
  AAH96263 (Get FASTA)   NCBI Sequence Viewer  
  AAH96264 (Get FASTA)   NCBI Sequence Viewer  
  ADO22360 (Get FASTA)   NCBI Sequence Viewer  
  BAG36931 (Get FASTA)   NCBI Sequence Viewer  
  BAG58590 (Get FASTA)   NCBI Sequence Viewer  
  EAW90015 (Get FASTA)   NCBI Sequence Viewer  
  EAW90016 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000262441
  ENSP00000262441.5
  ENSP00000303605.5
  ENSP00000404471.3
  ENSP00000458242
  ENSP00000458242.1
GenBank Protein O95838 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_004237   ⟸   NM_004246
- UniProtKB: Q4VAT3 (UniProtKB/Swiss-Prot),   O95838 (UniProtKB/Swiss-Prot),   B2RAN4 (UniProtKB/TrEMBL),   A0A384MTS7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011522379   ⟸   XM_011524077
- Peptide Label: isoform X1
- UniProtKB: B2RAN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016880829   ⟸   XM_017025340
- Peptide Label: isoform X3
- UniProtKB: B2RAN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016880830   ⟸   XM_017025341
- Peptide Label: isoform X4
- UniProtKB: I3L0P5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016880828   ⟸   XM_017025339
- Peptide Label: isoform X2
- UniProtKB: B2RAN4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000458242   ⟸   ENST00000574745
Ensembl Acc Id: ENSP00000404471   ⟸   ENST00000458005
Ensembl Acc Id: ENSP00000262441   ⟸   ENST00000262441
Ensembl Acc Id: ENSP00000303605   ⟸   ENST00000304773
RefSeq Acc Id: XP_054173789   ⟸   XM_054317814
- Peptide Label: isoform X1
- UniProtKB: B2RAN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054173790   ⟸   XM_054317815
- Peptide Label: isoform X2
- UniProtKB: B2RAN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054173791   ⟸   XM_054317816
- Peptide Label: isoform X3
- UniProtKB: B2RAN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054173792   ⟸   XM_054317817
- Peptide Label: isoform X4
- UniProtKB: I3L0P5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054173793   ⟸   XM_054317818
- Peptide Label: isoform X5
- UniProtKB: I3L0P5 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O95838-F1-model_v2 AlphaFold O95838 1-553 view protein structure

Promoters
RGD ID:7233989
Promoter ID:EPDNEW_H22739
Type:initiation region
Name:GLP2R_1
Description:glucagon like peptide 2 receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22740  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38179,825,528 - 9,825,588EPDNEW
RGD ID:7233987
Promoter ID:EPDNEW_H22740
Type:initiation region
Name:GLP2R_2
Description:glucagon like peptide 2 receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22739  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38179,825,924 - 9,825,984EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:4325 AgrOrtholog
COSMIC GLP2R COSMIC
Ensembl Genes ENSG00000065325 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000262441 ENTREZGENE
  ENST00000262441.10 UniProtKB/Swiss-Prot
  ENST00000304773.5 UniProtKB/TrEMBL
  ENST00000458005.2 UniProtKB/TrEMBL
  ENST00000574745 ENTREZGENE
  ENST00000574745.5 UniProtKB/TrEMBL
Gene3D-CATH 4.10.1240.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000065325 GTEx
HGNC ID HGNC:4325 ENTREZGENE
Human Proteome Map GLP2R Human Proteome Map
InterPro GLP2R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_secretin-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:9340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 9340 ENTREZGENE
OMIM 603659 OMIM
PANTHER PDF RECEPTOR-LIKE PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45620:SF23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA28726 PharmGKB
PRINTS GPCRSECRETIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HormR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF111418 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A384MTS7 ENTREZGENE, UniProtKB/TrEMBL
  B2RAN4 ENTREZGENE, UniProtKB/TrEMBL
  E9PC86_HUMAN UniProtKB/TrEMBL
  GLP2R_HUMAN UniProtKB/Swiss-Prot
  H0Y6C2_HUMAN UniProtKB/TrEMBL
  I3L0P5 ENTREZGENE, UniProtKB/TrEMBL
  O95838 ENTREZGENE
  Q4VAT1_HUMAN UniProtKB/TrEMBL
  Q4VAT2_HUMAN UniProtKB/TrEMBL
  Q4VAT3 ENTREZGENE
  Q4VAT4_HUMAN UniProtKB/TrEMBL
  Q86XI5_HUMAN UniProtKB/TrEMBL
UniProt Secondary Q4VAT3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-04 GLP2R  glucagon like peptide 2 receptor  GLP2R  glucagon-like peptide 2 receptor  Symbol and/or name change 5135510 APPROVED