Mgat2 (mannoside acetylglucosaminyltransferase 2) - Rat Genome Database

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Gene: Mgat2 (mannoside acetylglucosaminyltransferase 2) Mus musculus
Analyze
Symbol: Mgat2
Name: mannoside acetylglucosaminyltransferase 2
RGD ID: 731496
MGI Page MGI
Description: Enables alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity. Acts upstream of or within protein N-linked glycosylation via asparagine. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi membrane. Is expressed in several structures, including alimentary system; cranium; integumental system; sensory organ; and telencephalon. Used to study congenital disorder of glycosylation type IIa. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIa. Orthologous to human MGAT2 (alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA407964; alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase; beta-1,2-N-acetylglucosaminyltransferase II; CDGS; CDGS2; glcNAc-T II; GLCNACTII; GNT; GNT-II; GNT2; MGC37173; N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,230,932 - 69,233,547 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,230,931 - 69,233,544 (+)EnsemblGRCm39 Ensembl
GRCm381269,184,158 - 69,186,773 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,184,157 - 69,186,770 (+)EnsemblGRCm38mm10GRCm38
MGSCv371270,285,145 - 70,287,760 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361270,102,818 - 70,104,852 (+)NCBIMGSCv36mm8
Celera1270,275,998 - 70,278,613 (+)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
alachlor  (ISO)
alpha-phellandrene  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antimony(0)  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP)
benzo[b]fluoranthene  (EXP)
Benzo[ghi]perylene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
chromium atom  (ISO)
chrysene  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (ISO)
folic acid  (EXP)
gentamycin  (ISO)
indometacin  (ISO)
isobutanol  (ISO)
limonene  (ISO)
lycopene  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
metformin  (ISO)
methimazole  (ISO)
methotrexate  (EXP)
methyl methanesulfonate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
phenobarbital  (EXP)
phenol  (ISO)
phenytoin  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
potassium dichromate  (ISO)
silicon dioxide  (EXP)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sulfadimethoxine  (ISO)
tetrachloromethane  (EXP)
tetracycline  (EXP)
tetraphene  (EXP)
trichloroethene  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Congenital disorders of glycosylation IIa cause growth retardation, mental retardation, and facial dysmorphism. Cormier-Daire V, etal., J Med Genet. 2000 Nov;37(11):875-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Mutations in the MGAT2 gene controlling complex N-glycan synthesis cause carbohydrate-deficient glycoprotein syndrome type II, an autosomal recessive disease with defective brain development. Tan J, etal., Am J Hum Genet. 1996 Oct;59(4):810-7.
10. Modeling human congenital disorder of glycosylation type IIa in the mouse: conservation of asparagine-linked glycan-dependent functions in mammalian physiology and insights into disease pathogenesis. Wang Y, etal., Glycobiology. 2001 Dec;11(12):1051-70.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12417412   PMID:12466851   PMID:12477932   PMID:12576479   PMID:12621063   PMID:12676797   PMID:14681479  
PMID:14966132   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17848545   PMID:21267068   PMID:21873635   PMID:22698140   PMID:25263124   PMID:25315695   PMID:26935419   PMID:27146521  
PMID:27269286   PMID:27373844   PMID:27665677   PMID:30550785   PMID:31837122   PMID:32745987  


Genomics

Comparative Map Data
Mgat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,230,932 - 69,233,547 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,230,931 - 69,233,544 (+)EnsemblGRCm39 Ensembl
GRCm381269,184,158 - 69,186,773 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,184,157 - 69,186,770 (+)EnsemblGRCm38mm10GRCm38
MGSCv371270,285,145 - 70,287,760 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361270,102,818 - 70,104,852 (+)NCBIMGSCv36mm8
Celera1270,275,998 - 70,278,613 (+)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
MGAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381449,620,799 - 49,623,481 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,620,799 - 49,623,481 (+)EnsemblGRCh38hg38GRCh38
GRCh371450,087,517 - 50,090,199 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,157,239 - 49,159,949 (+)NCBINCBI36Build 36hg18NCBI36
Build 341449,157,246 - 49,159,924NCBI
Celera1429,947,307 - 29,950,017 (+)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,204,620 - 30,207,330 (+)NCBIHuRef
CHM1_11450,026,493 - 50,029,203 (+)NCBICHM1_1
T2T-CHM13v2.01443,819,023 - 43,821,705 (+)NCBIT2T-CHM13v2.0
Mgat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2687,656,360 - 87,658,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl687,656,349 - 87,658,177 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,056,244 - 88,058,733 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,355,679 - 88,358,168 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,795,430 - 87,797,919 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,476,698 - 91,479,187 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl691,476,698 - 91,479,183 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06100,935,605 - 100,938,094 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,137,262 - 91,139,751 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,140,717 - 91,143,203 (+)NCBI
Celera686,155,587 - 86,158,076 (+)NCBICelera
Cytogenetic Map6q24NCBI
Mgat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540913,030,569 - 13,031,912 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540913,029,578 - 13,032,406 (-)NCBIChiLan1.0ChiLan1.0
MGAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11449,961,730 - 49,964,401 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,199,011 - 30,201,566 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,508,936 - 48,511,644 (+)NCBIpanpan1.1PanPan1.1panPan2
MGAT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,244,894 - 26,247,960 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl826,245,407 - 26,246,747 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha825,999,094 - 26,001,888 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,423,188 - 26,425,981 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,423,230 - 26,425,166 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,078,562 - 26,081,356 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,152,187 - 26,154,981 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,469,320 - 26,472,110 (+)NCBIUU_Cfam_GSD_1.0
Mgat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,288,862 - 58,292,089 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936583398,190 - 399,533 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936583396,787 - 399,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,477,992 - 179,479,801 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,478,464 - 179,479,804 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21199,864,843 - 199,866,183 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1q23-q27NCBI
MGAT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,660,554 - 26,663,264 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2426,661,049 - 26,662,392 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605314,976,920 - 14,979,602 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mgat2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473119,081,110 - 19,082,453 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473119,080,986 - 19,082,887 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mgat2
109 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:190
Count of miRNA genes:143
Interacting mature miRNAs:163
Transcripts:ENSMUST00000060579
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse

Markers in Region
RH125751  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381269,186,419 - 69,186,619UniSTSGRCm38
MGSCv371270,287,406 - 70,287,606UniSTSGRCm37
Celera1270,278,259 - 70,278,459UniSTS
Cytogenetic Map12C2UniSTS
Whitehead/MRC_RH12641.96UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000060579   ⟹   ENSMUSP00000057905
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1269,230,931 - 69,233,544 (+)Ensembl
GRCm38.p6 Ensembl1269,184,157 - 69,186,770 (+)Ensembl
RefSeq Acc Id: NM_146035   ⟹   NP_666147
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391269,230,932 - 69,233,547 (+)NCBI
GRCm381269,184,158 - 69,186,773 (+)ENTREZGENE
MGSCv371270,285,145 - 70,287,760 (+)RGD
Celera1270,275,998 - 70,278,613 (+)RGD
cM Map12 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_666147   ⟸   NM_146035
- UniProtKB: Q3U6X4 (UniProtKB/Swiss-Prot),   Q8C3Z6 (UniProtKB/Swiss-Prot),   Q921V5 (UniProtKB/Swiss-Prot),   Q3TXN3 (UniProtKB/TrEMBL),   Q3U5X7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000057905   ⟸   ENSMUST00000060579

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q921V5-F1-model_v2 AlphaFold Q921V5 1-442 view protein structure

Promoters
RGD ID:8678390
Promoter ID:EPDNEW_M17225
Type:initiation region
Name:Mgat2_1
Description:Mus musculus mannoside acetylglucosaminyltransferase 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381269,184,191 - 69,184,251EPDNEW
RGD ID:6823368
Promoter ID:MM_KWN:11797
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000110620,   NM_146035,   OTTMUST00000058172,   OTTMUST00000058173
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361270,282,741 - 70,288,232 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384966 AgrOrtholog
Ensembl Genes ENSMUSG00000043998 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000060579 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro GlcNAc_II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:217664 UniProtKB/Swiss-Prot
MGD MGI:2384966 ENTREZGENE
NCBI Gene 217664 ENTREZGENE
PANTHER ALPHA-1,6-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12871 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MGAT2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mgat2 PhenoGen
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt MGAT2_MOUSE UniProtKB/Swiss-Prot
  Q3TBY6_MOUSE UniProtKB/TrEMBL
  Q3TXN3 ENTREZGENE, UniProtKB/TrEMBL
  Q3U5X7 ENTREZGENE, UniProtKB/TrEMBL
  Q3U6X4 ENTREZGENE
  Q8C3Z6 ENTREZGENE
  Q921V5 ENTREZGENE
UniProt Secondary Q3U6X4 UniProtKB/Swiss-Prot
  Q8C3Z6 UniProtKB/Swiss-Prot