Scg5 (secretogranin V) - Rat Genome Database

Name: Scg5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Scg5 (secretogranin V) Mus musculus

Analyze

Symbol:

Scg5

Name:

secretogranin V

RGD ID:

731407

MGI Page

MGI

Description:

Enables enzyme inhibitor activity. Involved in intracellular protein transport; peptide hormone processing; and regulation of hormone secretion. Is active in nucleus. Is expressed in several structures, including gut; lung; nervous system; and sensory organ. Used to study pituitary-dependent Cushing's disease. Orthologous to human SCG5 (secretogranin V).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

7B2; AI325031; neuroendocrine protein 7B2; secretogranin-5; secretory granule endocrine protein I; secretory granule neuroendocrine protein 1, 7B2 protein; Sgn; Sgne; Sgne-1; Sgne1

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SCG5 (secretogranin V)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Scg5 (secretogranin V)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Scg5 (secretogranin V)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SCG5 (secretogranin V)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SCG5 (secretogranin V)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Scg5 (secretogranin V)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SCG5 (secretogranin V)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SCG5 (secretogranin V)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Scg5 (secretogranin V)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Scg5 (secretogranin V)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SCG5 (secretogranin V)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	scg5 (secretogranin V)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Drosophila melanogaster (fruit fly):	7B2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	sbt-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	scg5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	113,606,658 - 113,659,436 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	113,606,707 - 113,659,466 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	113,776,313 - 113,829,091 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	113,776,362 - 113,829,121 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	113,616,470 - 113,669,248 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	113,577,206 - 113,629,965 (-)	NCBI		MGSCv36	mm8
Celera	2	114,909,627 - 114,958,933 (-)	NCBI		Celera
Cytogenetic Map	2	E4	NCBI
cM Map	2	57.45	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

Colorectal Neoplasms (ISO)

genetic disease (ISO)

hereditary mixed polyposis syndrome (ISO)

hereditary mixed polyposis syndrome 1 (ISO)

medulloblastoma (ISO)

pituitary-dependent Cushing's disease (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

3,4-dichloroaniline (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3,7-dihydropurine-6-thione (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

aflatoxin B1 (ISO)

ammonium chloride (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

buta-1,3-diene (EXP)

butanal (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

chlordecone (EXP)

chloropicrin (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

diuron (ISO)

ethanol (EXP)

fenvalerate (ISO)

folic acid (EXP)

formaldehyde (ISO)

furan (ISO)

hydroquinone (ISO)

mercaptopurine (ISO)

methylisothiazolinone (ISO)

mitomycin C (ISO)

monosodium L-glutamate (EXP)

paclitaxel (ISO)

paracetamol (ISO)

PD 0325901 (ISO)

perfluorononanoic acid (ISO)

pirinixic acid (ISO)

purine-6-thiol (ISO)

quercetin (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (ISO)

sunitinib (ISO)

tamoxifen (EXP)

taurine (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

urethane (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IDA)

neuropeptide signaling pathway (IEA)

peptide hormone processing (IDA)

regulation of hormone secretion (IBA,IDA)

Cellular Component

extracellular region (IEA)

nucleus (IDA)

secretory granule (IEA)

Molecular Function

enzyme inhibitor activity (IDA)

enzyme regulator activity (IBA)

protein binding (ISO)

unfolded protein binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal adipose tissue distribution (IAGP)

abnormal adrenal gland morphology (IAGP)

abnormal cardiovascular system morphology (IAGP)

abnormal circulating insulin level (IAGP)

abnormal gland morphology (IAGP)

abnormal glucose homeostasis (IAGP)

abnormal hair growth (IAGP)

abnormal mineral level (IAGP)

abnormal pancreatic islet morphology (IAGP)

abnormal respiration (IAGP)

adrenal cortical hyperplasia (IAGP)

alopecia (IAGP)

bruising (IAGP)

convulsive seizures (IAGP)

cryptorchism (IAGP)

decreased body size (IAGP)

decreased body temperature (IAGP)

decreased circulating glucagon level (IAGP)

decreased circulating magnesium level (IAGP)

dystrophic cardiac calcinosis (IAGP)

ecchymosis (IAGP)

enlarged heart (IAGP)

enlarged liver (IAGP)

hemorrhage (IAGP)

hemothorax (IAGP)

hepatic necrosis (IAGP)

hepatic steatosis (IAGP)

hyperkeratosis (IAGP)

hypoglycemia (IAGP)

increased adrenocorticotropin level (IAGP)

increased circulating corticosterone level (IAGP)

increased circulating lactate level (IAGP)

increased liver glycogen level (IAGP)

increased pancreatic beta cell mass (IAGP)

pallor (IAGP)

pancreatic islet hyperplasia (IAGP)

polyphagia (IAGP)

postnatal lethality, incomplete penetrance (IAGP)

respiratory distress (IAGP)

small adenohypophysis (IAGP)

sparse hair (IAGP)

spleen atrophy (IAGP)

thin dermal layer (IAGP)

thin skin (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	MGD IEA	MGD IEA
5.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	The lethal form of Cushing's in 7B2 null mice is caused by multiple metabolic and hormonal abnormalities.	Sarac MS, etal., Endocrinology 2002 Jun;143(6):2324-32.

Additional References at PubMed

PMID:1743287	PMID:2328988	PMID:2542174	PMID:7633422	PMID:7824189	PMID:8016065	PMID:8034690	PMID:9210379	PMID:9348280	PMID:9616220	PMID:10089884	PMID:10349636
PMID:10873584	PMID:11042159	PMID:11076861	PMID:11439082	PMID:11755537	PMID:11852092	PMID:11854475	PMID:12021196	PMID:12438088	PMID:12477932	PMID:14576186	PMID:15226823
PMID:15489334	PMID:15597075	PMID:15878971	PMID:16141072	PMID:16141073	PMID:16163737	PMID:16286464	PMID:16443780	PMID:16987237	PMID:17554679	PMID:18385073	PMID:18439298
PMID:18467442	PMID:18973680	PMID:20547661	PMID:21267068	PMID:21343540	PMID:21873635	PMID:22013069	PMID:22706340	PMID:24952961	PMID:26944677	PMID:27914912	PMID:29955078
PMID:32325033

Genomics

Comparative Map Data

Scg5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	113,606,658 - 113,659,436 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	113,606,707 - 113,659,466 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	113,776,313 - 113,829,091 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	113,776,362 - 113,829,121 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	113,616,470 - 113,669,248 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	113,577,206 - 113,629,965 (-)	NCBI		MGSCv36	mm8
Celera	2	114,909,627 - 114,958,933 (-)	NCBI		Celera
Cytogenetic Map	2	E4	NCBI
cM Map	2	57.45	NCBI

SCG5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	32,641,710 - 32,697,092 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	15	32,641,676 - 32,697,098 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	32,933,911 - 32,989,293 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	30,721,252 - 30,776,590 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	30,721,251 - 30,776,590	NCBI
Celera	15	9,735,550 - 9,791,154 (+)	NCBI		Celera
Cytogenetic Map	15	q13.3	NCBI
HuRef	15	9,796,189 - 9,851,652 (+)	NCBI		HuRef
CHM1_1	15	33,051,914 - 33,107,353 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	30,438,200 - 30,493,619 (+)	NCBI		T2T-CHM13v2.0

Scg5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	100,544,101 - 100,588,558 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	100,544,099 - 100,588,463 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	104,171,047 - 104,215,378 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	112,770,077 - 112,814,414 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	110,459,966 - 110,504,303 (-)	NCBI	Rnor_WKY
Rnor_6.0	3	105,235,065 - 105,279,475 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	105,235,050 - 105,279,462 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	111,811,718 - 111,856,212 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	99,629,194 - 99,674,523 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	99,525,619 - 99,570,949 (-)	NCBI
Celera	3	99,515,552 - 99,558,902 (-)	NCBI		Celera
RH 3.4 Map	3	840.41	RGD
Cytogenetic Map	3	q35	NCBI

Scg5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	1,866,997 - 1,914,640 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	1,867,848 - 1,914,505 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCG5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	15	26,131,284 - 26,187,027 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	11,136,920 - 11,192,606 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	29,974,633 - 30,030,291 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	29,974,633 - 30,030,291 (+)	Ensembl	panpan1.1		panPan2

SCG5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	2,261,144 - 2,315,315 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	2,261,189 - 2,315,213 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	2,310,629 - 2,364,774 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	2,373,662 - 2,427,835 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	2,373,665 - 2,427,885 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	2,310,404 - 2,364,530 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	2,409,276 - 2,463,487 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	2,537,616 - 2,591,809 (-)	NCBI		UU_Cfam_GSD_1.0

Scg5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	80,784,633 - 80,839,707 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936673	1,311,861 - 1,367,237 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936673	1,312,183 - 1,367,205 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCG5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	136,525,944 - 136,593,583 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	136,525,920 - 136,590,021 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	152,695,828 - 152,711,796 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCG5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	50,182,966 - 50,243,284 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	50,189,473 - 50,243,282 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	90,640,439 - 90,694,840 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scg5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624804	1,660,371 - 1,711,169 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Scg5
1424 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	185
Count of miRNA genes:	167
Interacting mature miRNAs:	174
Transcripts:	ENSMUST00000024005, ENSMUST00000139975
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357881	Estoq1_m	embryo survival total QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357454	Kidq1_m	kidney weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357436	Splq1_m	spleen weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
39128209	Lwq14_m	liver weight QTL 14 (mouse)					2	20897778	118894840	Mouse
1558899	Egq1_m	early growth QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1558966	W10q9_m	weight 10 weeks QTL 9 (mouse)			Not determined		2	20897778	118894840	Mouse
1558915	W3q1_m	weight 3 weeks QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1558738	W6q1_m	weight 6 weeks QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357681	Hrtq1_m	heart weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1302174	Dssc2_m	dextran sodium sulfate induced colitis QTL2 (mouse)			Not determined		2	24224632	148700377	Mouse
4141854	T2dm2sa_m	type 2 diabetes mellitus 2 in SMXA RI mice (mouse)			Not determined		2	29307947	148374934	Mouse
1301109	Dntcs2_m	dental caries susceptibility 2 (mouse)			Not determined		2	40885493	114910165	Mouse
1301344	Lith1_m	lithogenic gene 1 (mouse)			Not determined		2	45347635	145312647	Mouse
1357577	Trmq3_m	T cell ratio modifier QTL 3 (mouse)			Not determined		2	60520612	119355518	Mouse
13824983	Vclq1_m	curvilinear velocity QTL 1 (mouse)					2	61830344	136841920	Mouse
5491197	Mobq5_m	multigenic obesity QTL 5 (mouse)			Not determined		2	65269746	162518926	Mouse
4142088	Parms1_m	patched associated RMS 1 (mouse)			Not determined			74524117	114123532	Mouse
11528549	Sluc31_m	susceptibility to lung cancer 31 (mouse)					2	74524117	129213005	Mouse
10043894	Bw22_m	body weight QTL 22 (mouse)			Not determined		2	80895334	114895334	Mouse
15092054	Egrme5_m	early growth rate, maternal effect 5 (mouse)					2	82190187	118004745	Mouse
1558901	Skmw8_m	skeletal muscle weight 8 (mouse)			Not determined		2	84008488	118008593	Mouse
4141155	Plast2b_m	plasma plant sterol 2b (mouse)			Not determined		2	84013198	148522175	Mouse
10412082	Hylaq1_m	Hyperlocomotor activity related QTL 1 (mouse)			Not determined		2	84013198	148667470	Mouse
5491196	Mobq6_m	multigenic obesity QTL 6 (mouse)			Not determined		2	85724269	180896594	Mouse
11049565	Lmr28g_m	leishmaniasis resistance 28g (mouse)					2	86095716	120095823	Mouse
11038697	Ltpr2d_m	Leishmania tropica response 2d (mouse)					2	86095716	120095823	Mouse
11038698	Ltpr2c_m	Leishmania tropica response 2c (mouse)					2	86095716	120095823	Mouse
1300852	Lmr14_m	leishmaniasis resistance 14 (mouse)			Not determined		2	86095716	120095823	Mouse
1301834	Bits1_m	bitterness sensitivity 1 (mouse)			Not determined		2	87440643	121440778	Mouse
11532731	Sluc31a_m	susceptibility to lung cancer 31a (mouse)					2	88015003	122015170	Mouse
4142223	Femwf4_m	femur work to failure 4 (mouse)			Not determined			88143423	122143570	Mouse
1301098	Cd8mts3_m	CD8 memory T cell subset 3 (mouse)			Not determined		2	91089974	125090104	Mouse
1301909	Smdq2_m	segregation of mitochondrial DNA QTL 2 (mouse)			Not determined		2	92778465	126778607	Mouse
27226761	Feml18_m	femur length 18, 16 week (mouse)					2	94230345	154241920	Mouse
11049569	Lmr28d_m	leishmaniasis resistance 28d (mouse)					2	97123370	131123532	Mouse
11049568	Lmr28c_m	leishmaniasis resistance 28c (mouse)					2	97123370	131123532	Mouse
12904935	Edlmmq2_m	extensor digitorum longus muscle mass QTL 2 (mouse)					2	97210364	131210364	Mouse
12904954	Gmmq2_m	gastrocnemius muscle mass QTL 2 (mouse)					2	97210364	131210364	Mouse
4141802	Ignpq1_m	IgA nephropathy QTL 1 (mouse)			Not determined		2	100824060	134824269	Mouse
1302203	Gvhd3_m	graft-versus host disease 3 (mouse)			Not determined		2	100942930	134943090	Mouse
1301330	Tbbmd2_m	total body bone mineral density 2 (mouse)			Not determined		2	100942930	134943090	Mouse
1302071	Fembrs1_m	femur breaking strength 1 (mouse)			Not determined		2	100942930	134943090	Mouse
27226788	Feml13_m	femur length 13, 10 week (mouse)					2	102630345	159941920	Mouse
11041906	Lmr28a_m	leishmaniasis resistance 28a (mouse)					2	103095716	129213005	Mouse
11038702	Ltpr2_m	Leishmania tropica response 2 (mouse)					2	103095716	167212356	Mouse
1301825	Pbrgcsf1_m	peripheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)			Not determined		2	106233580	140233729	Mouse
10043875	Bw25_m	body weight QTL 25 (mouse)			Not determined		2	107255676	141255676	Mouse
1301087	Bbaa15_m	B.burgdorferi-associated arthritis 15 (mouse)			Not determined		2	110489658	144489807	Mouse
10045885	Cplaq15_m	circadian period of locomotor activity 15 (mouse)			Not determined		2	110916118	154354667	Mouse
1558990	Skmw9_m	skeletal muscle weight 9 (mouse)			Not determined		2	111173704	145173821	Mouse
1300793	Pcfm2_m	periosteal circumference and femur length 2 (mouse)			Not determined		2	111173704	145173821	Mouse
1301905	Lgth2_m	body length 2 (mouse)			Not determined		2	111173704	145173821	Mouse
1301755	Hrq1_m	heart rate quantitative locus 1 (mouse)			Not determined		2	111173704	145173821	Mouse
1301201	Chab1_m	cholesterol absorption 1 (mouse)			Not determined		2	111551028	145551163	Mouse
1302033	Nsv1_m	Neuroadapted Sindbis viral RNA level 1 (mouse)			Not determined		2	111623386	145623526	Mouse
1300798	Actre3_m	activity response to ethanol 3 (mouse)			Not determined		2	112024987	128173821	Mouse
1301415	Actre4_m	activity response to ethanol 4 (mouse)			Not determined		2	112024987	128173821	Mouse
11039520	Ltpr2h_m	Leishmania tropica response 2h (mouse)					2	112212746	146213005	Mouse
11038699	Ltpr2b_m	Leishmania tropica response 2b (mouse)					2	112212746	146213005	Mouse
11038700	Ltpr2a_m	Leishmania tropica response 2a (mouse)					2	112212746	146213005	Mouse

Markers in Region

AI325031

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	113,776,736 - 113,776,843	UniSTS	GRCm38
MGSCv37	2	113,616,893 - 113,617,000	UniSTS	GRCm37
Celera	2	114,910,057 - 114,910,164	UniSTS
Cytogenetic Map	2	E5	UniSTS
cM Map	2	64.0	UniSTS
Whitehead/MRC_RH	2	1466.46	UniSTS

X15830

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	113,776,668 - 113,776,755	UniSTS	GRCm38
MGSCv37	2	113,616,825 - 113,616,912	UniSTS	GRCm37
Celera	2	114,909,989 - 114,910,076	UniSTS
Cytogenetic Map	2	E5	UniSTS
cM Map	2	64.0	UniSTS
Whitehead/MRC_RH	2	1465.82	UniSTS

Scg5

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	2	E5	UniSTS
cM Map	2	57.45	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001420937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001420938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001420939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001420942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001420943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001420944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001420945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001420946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001420947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_009162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_185217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_185218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036159847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036159848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036159849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036159851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036159857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036159860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK003049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK005331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK017481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK019337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK031856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK161556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK161579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL772405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY902313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB025018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC029021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X15830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000024005 ⟹ ENSMUSP00000024005

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	113,606,707 - 113,659,466 (-)	Ensembl
GRCm38.p6 Ensembl	2	113,776,362 - 113,829,121 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000139975

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	113,657,685 - 113,659,107 (-)	Ensembl
GRCm38.p6 Ensembl	2	113,827,340 - 113,828,762 (-)	Ensembl

RefSeq Acc Id:

NM_009162 ⟹ NP_033188

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	113,606,658 - 113,659,436 (-)	NCBI
GRCm38	2	113,776,313 - 113,829,091 (-)	ENTREZGENE
MGSCv37	2	113,616,470 - 113,669,248 (-)	RGD
Celera	2	114,909,627 - 114,958,933 (-)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

CCGAGGTTTCGGAGGGAGGTGACGCAGGAGCTATCCAGCACGTCAGCTCCCTGTTTTGGCCTAG
ATTGCAAGAAGCTCGCCCGCGGCCACACGGTTAAAAATGGCCTCAAGGCTGGTCTCTGCTATGC
TATCTGGCCTTTTGTTTTGGTTGATGTTTGAGTGGAATCCAGCATTCGCTTATAGTCCACGGAC
CCCTGACCGGGTCTCAGAGACAGACATCCAGAGGCTGCTTCATGGGGTTATGGAGCAGCTGGGC
ATTGCCAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTTGTTGGGCCACAGAGCA
TCGAAGGGGGAGCTCACGAGGGTCTTCAGCATCTGGGTCCTTTTGGCAACATCCCCAACATAGT
GGCAGAGTTGACTGGTGACAACATTCCTAAGGACTTCAGTGAGGATCAAGGCTACCCAGACCCT
CCAAATCCCTGTCCTCTTGGGAAAACTGCTGATGATGGATGTCTAGAAAACGCCCCCGACACTG
CAGAGTTCAGCCGAGAATTCCAGTTAGACCAGCACCTTTTTGATCCAGAACATGACTACCCAGG
TTTGGGCAAGTGGAACAAGAAACTCCTTTATGAGAAAATGAAGGGAGGACAGAGGCGGAAGCGG
AGGAGTGTCAATCCCTATCTACAAGGAAAGAGGTTGGACAATGTTGTGGCAAAGAAATCTGTCC
CCCACTTCTCAGAAGAGGAGAAGGAAGCAGAATAAAGAGAAGACAGTATGTAGAAACCCATCCA
ATGCTTATGTGCATGTTCATAGAGCCCGTGAGTGACAGCATGCATTTTACATATTTATGGATGA
AAAGCAGCTGTCCTTGCCTCCATACCAATGCCTGTGCTTTCTGCTACATTAGAATAAAAGCTCC
TTCTCTTTGGGGGATTTTTTTGATGTGGATCTGCAAGAAACATTACAATTAAAATGTATATGTC
AAGTATAATAAAAACACGGATATGAAATACTCAGATTTCTTGCAGTTTTGGGTTATGCTGTTTG
GGCCAAGTCTGTAAAACGCTAGCATTTGATTTTGATTATGTAGTGTATCTAGCCCTTGGGCCTT
GTTACACACCAATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGACACATCTCACTCTGCTGCTT
CTTAATAAATGTATGTGCGAGCATTGGCTTGGGAAGTTTTTATATAACAGTATAAAATCAATTT
CTTTGCTTAAT

hide sequence

RefSeq Acc Id:

XM_036159847 ⟹ XP_036015740

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	113,606,708 - 113,659,329 (-)	NCBI

Sequence:

show sequence

GATGCAGGTGATGCGGTCCGACTTGTCGTTCAGCTGAAAGCGGGAGTGCTTGGGTTCCTTGGGT
GTGGGGGAGCATGCCCTTCAGAAACCCTAGCTGGGGTCAGACAAAGGATGGATGCGGGGATTAC
AGGGGGTGGTTATAAATAAGGGGTGGGGGTGGAGTTCCGAGAGCAGCGATTGGGTAGTTCATCC
GTGGGCTAGCCAGTAAAGAAAACATCCTGTATTCGGAGTTCATGAAGAAAGATGGAGATGATGG
AGCCTGGTGCCCGCATCCAGCCCTTTTATCACAGCGGTAGATTGTGCTGTTAAAATAGCGGTCC
TTGGCTCTTTGAAGAGCATGGTTTTAATGTCTGTGAGTTGCAAGGAAAGGCCGTTAGCTGCAGA
CAGATAAAATGAAGTATTTGTTTTAGGGAAGATATTTGGCTTGTTCCCTACCTTTTTATTCCCT
ATTCCCGTGTGAATGCTCAAAAGGGTTTATCTGACTATGGCCTGAAGCACCCATCCTGAACGAG
CAGCTGCCAGGGAAGCTGTGTGAAAACTGTTTCCTTGTTCAGCTTCCCGTGGCTTCTACGGACA
CCAACATAAAAGGAGGCTGAGGAACTTGCCCAGGAAGACCTAGCTGGTATGCAGTCAAGCGTCT
CATGTTGCTTGCTTCCCTCATCACAGAGCAGGATAGGAGTTGGCGTACCTCTCTGCTCGGGATC
TTCACCTATTGCCTGCTGGTCTGCTAAGTTCAAACACCCTCGGCCACTACTCCAGACCTTTCTC
TGGGATGTTTTTTGATTGTCTGTTTGTTTTTTACTGTTTGGGTCTCCCTAACTCCCTTTTGTTA
TTCCTTTCTTTCCTTAAACTAGGAGATCTTAAAAATTACCACCCTCCCTATCTCAAATCCAAAA
GTGCTTAGATTGCAAGGATCACAGACCATAGATGTGAGAACATATTCCTGTCCTTAGAATCCTC
AGGTGTCAAGTTAGAGGGACTAGTTTATCCTAGACTCTTCTGTCTTCTTATTTCCTTCACACAG
CGGTTTCCTACCTGGCTTGGACACAAAGCAAACCTCTAGGAATTTTTCATTTGAGTCTCCTTTC
AGGGTGGTCCTTCAGCCTCAACTTGTTAAAAATGGCCTCAAGGCTGGTCTCTGCTATGCTATCT
GGCCTTTTGTTTTGGTTGATGTTTGAGTGGAATCCAGCATTCGCTTATAGTCCACGGACCCCTG
ACCGGGTCTCAGAGACAGACATCCAGAGGCTGCTTCATGGGGTTATGGAGCAGCTGGGCATTGC
CAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTTGTTGGGCCACAGAGCATCGAA
GGGGGAGCTCACGAGGGTCTTCAGCATCTGGGTCCTTTTGGCAACATCCCCAACATAGTGGCAG
AGTTGACTGGTGACAACATTCCTAAGGACTTCAGTGAGGATCAAGGCTACCCAGACCCTCCAAA
TCCCTGTCCTCTTGGGAAAACTGCTGATGATGGATGTCTAGAAAACGCCCCCGACACTGCAGAG
TTCAGCCGAGAATTCCAGTTAGACCAGCACCTTTTTGATCCAGAACATGACTACCCAGGTTTGG
GCAAGTGGAACAAGAAACTCCTTTATGAGAAAATGAAGGGAGGACAGAGGCGGAAGCGGAGGAG
TGTCAATCCCTATCTACAAGGAAAGAGGTTGGACAATGTTGTGGCAAAGAAATCTGTCCCCCAC
TTCTCAGAAGAGGAGAAGGAAGCAGAATAAAGAGAAGACAGTATGTAGAAACCCATCCAATGCT
TATGTGCATGTTCATAGAGCCCGTGAGTGACAGCATGCATTTTACATATTTATGGATGAAAAGC
AGCTGTCCTTGCCTCCATACCAATGCCTGTGCTTTCTGCTACATTAGAATAAAAGCTCCTTCTC
TTTGGGGGATTTTTTTGATGTGGATCTGCAAGAAACATTACAATTAAAATGTATATGTCAAGTA
TAATAAAAACACGGATATGAAATACTCAGATTTCTTGCAGTTTTGGGTTATGCTGTTTGGGCCA
AGTCTGTAAAACGCTAGCATTTGATTTTGATTATGTAGTGTATCTAGCCCTTGGGCCTTGTTAC
ACACCAATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGACACATCTCACTCTGCTGCTTCTTAA
TAAATGTATGTGCGAGCATT

hide sequence

RefSeq Acc Id:

XM_036159848 ⟹ XP_036015741

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	113,606,708 - 113,658,511 (-)	NCBI

Sequence:

show sequence

ACTTGCCCAGGAAGACCTAGCTGGTATGCAGTCAAGCGTCTCATGTTGCTTGCTTCCCTCATCA
CAGAGCAGGATAGGAGTTGGCGTACCTCTCTGCTCGGGATCTTCACCTATTGCCTGCTGGTCTG
CTAAGTTCAAACACCCTCGGCCACTACTCCAGACCTTTCTCTGGGATGTTTTTTGATTGTCTGT
TTGTTTTTTACTGTTTGGGTCTCCCTAACTCCCTTTTGTTATTCCTTTCTTTCCTTAAACTAGG
AGATCTTAAAAATTACCACCCTCCCTATCTCAAATCCAAAAGTGCTTAGATTGCAAGGATCACA
GACCATAGATCGGTTTCCTACCTGGCTTGGACACAAAGCAAACCTCTAGGAATTTTTCATTTGA
GTCTCCTTTCAGGGTGGTCCTTCAGCCTCAACTTGTTAAAAATGGCCTCAAGGCTGGTCTCTGC
TATGCTATCTGGCCTTTTGTTTTGGTTGATGTTTGAGTGGAATCCAGCATTCGCTTATAGTCCA
CGGACCCCTGACCGGGTCTCAGAGACAGACATCCAGAGGCTGCTTCATGGGGTTATGGAGCAGC
TGGGCATTGCCAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTTGTTGGGCCACA
GAGCATCGAAGGGGGAGCTCACGAGGGTCTTCAGCATCTGGGTCCTTTTGGCAACATCCCCAAC
ATAGTGGCAGAGTTGACTGGTGACAACATTCCTAAGGACTTCAGTGAGGATCAAGGCTACCCAG
ACCCTCCAAATCCCTGTCCTCTTGGGAAAACTGCTGATGATGGATGTCTAGAAAACGCCCCCGA
CACTGCAGAGTTCAGCCGAGAATTCCAGTTAGACCAGCACCTTTTTGATCCAGAACATGACTAC
CCAGGTTTGGGCAAGTGGAACAAGAAACTCCTTTATGAGAAAATGAAGGGAGGACAGAGGCGGA
AGCGGAGGAGTGTCAATCCCTATCTACAAGGAAAGAGGTTGGACAATGTTGTGGCAAAGAAATC
TGTCCCCCACTTCTCAGAAGAGGAGAAGGAAGCAGAATAAAGAGAAGACAGTATGTAGAAACCC
ATCCAATGCTTATGTGCATGTTCATAGAGCCCGTGAGTGACAGCATGCATTTTACATATTTATG
GATGAAAAGCAGCTGTCCTTGCCTCCATACCAATGCCTGTGCTTTCTGCTACATTAGAATAAAA
GCTCCTTCTCTTTGGGGGATTTTTTTGATGTGGATCTGCAAGAAACATTACAATTAAAATGTAT
ATGTCAAGTATAATAAAAACACGGATATGAAATACTCAGATTTCTTGCAGTTTTGGGTTATGCT
GTTTGGGCCAAGTCTGTAAAACGCTAGCATTTGATTTTGATTATGTAGTGTATCTAGCCCTTGG
GCCTTGTTACACACCAATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGACACATCTCACTCTGC
TGCTTCTTAATAAATGTATGTGCGAGCATT

hide sequence

RefSeq Acc Id:

XM_036159849 ⟹ XP_036015742

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	113,606,710 - 113,659,423 (-)	NCBI

Sequence:

show sequence

GGGAGGTGACGCAGGAGCTATCCAGCACGTCAGCTCCCTGTTTTGGCCTAGATTGCAAGAAGCT
CGCCCGCGGCCACACGGTGAGTTCCGCAGTGATGCAGGTGATGCGGTCCGACTTGTCGTTCAGC
TGAAAGCGGGAGTGCTTGGGTTCCTTGGGTGTGGGGGAGCATGCCCTTCAGAAACCCTAGCTGG
GGTCAGACAAAGGATGGATGCGGGGATTACAGGGGGTGGTTATAAATAAGGGGTGGGGGTGGAG
TTCCGAGAGCAGCGATTGGGTAGTTCATCCGTGGGCTAGCCAGTAAAGAAAACATCCTGTATTC
GGAGTTCATGAAGAAAGATGGAGATGATGGAGCCTGGTGCCCGCATCCAGCCCTTTTATCACAG
CGGTAGATTGTGCTGTTAAAATAGCGGTCCTTGGCTCTTTGAAGAGCATGGTTTTAATGTCTGT
GAGTTGCAAGGAAAGGCCGTTAGCTGCAGACAGATAAAATGAAGTATTTGTTTTAGGGAAGATA
TTTGGCTTGTTCCCTACCTTTTTATTCCCTATTCCCGTGTGAATGCTCAAAAGGGTTTATCTGA
CTATGGCCTGAAGCACCCATCCTGAACGAGCAGCTGCCAGGGAAGCTGTGTGAAAACTGTTTCC
TTGTTCAGCTTCCCGTGGCTTCTACGGACACCAACATGTAAGGCAGATTTATCCCCCACCATGT
CACTGTCTTTCCTCTCCCTGCTGCTTCTGCCTCCGCAAACCTTAACTCCCAGAACCGCTTATTA
CCATCAAGGGGCTAGACGTGCAGGGGGCTTACTAGGTACCTGGCTTTGCTCCATGCTCCTTACA
TGATTTTGATCTTTATCTTCACAGTAACTCTATAAGATAGATTGTTGCTATCCTTGGTCTGTAG
AAAAGGAGGCTGAGGAACTTGCCCAGGAAGACCTAGCTGCGGTTTCCTACCTGGCTTGGACACA
AAGCAAACCTCTAGGAATTTTTCATTTGAGTCTCCTTTCAGGGTGGTCCTTCAGCCTCAACTTG
TTAAAAATGGCCTCAAGGCTGGTCTCTGCTATGCTATCTGGCCTTTTGTTTTGGTTGATGTTTG
AGTGGAATCCAGCATTCGCTTATAGTCCACGGACCCCTGACCGGGTCTCAGAGACAGACATCCA
GAGGCTGCTTCATGGGGTTATGGAGCAGCTGGGCATTGCCAGGCCACGCGTGGAGTACCCGGCT
CACCAGGCCATGAATCTTGTTGGGCCACAGAGCATCGAAGGGGGAGCTCACGAGGGTCTTCAGC
ATCTGGGTCCTTTTGGCAACATCCCCAACATAGTGGCAGAGTTGACTGGTGACAACATTCCTAA
GGACTTCAGTGAGGATCAAGGCTACCCAGACCCTCCAAATCCCTGTCCTCTTGGGAAAACTGCT
GATGATGGATGTCTAGAAAACGCCCCCGACACTGCAGAGTTCAGCCGAGAATTCCAGTTAGACC
AGCACCTTTTTGATCCAGAACATGACTACCCAGGTTTGGGCAAGTGGAACAAGAAACTCCTTTA
TGAGAAAATGAAGGGAGGACAGAGGCGGAAGCGGAGGAGTGTCAATCCCTATCTACAAGGAAAG
AGGTTGGACAATGTTGTGGCAAAGAAATCTGTCCCCCACTTCTCAGAAGAGGAGAAGGAAGCAG
AATAAAGAGAAGACAGTATGTAGAAACCCATCCAATGCTTATGTGCATGTTCATAGAGCCCGTG
AGTGACAGCATGCATTTTACATATTTATGGATGAAAAGCAGCTGTCCTTGCCTCCATACCAATG
CCTGTGCTTTCTGCTACATTAGAATAAAAGCTCCTTCTCTTTGGGGGATTTTTTTGATGTGGAT
CTGCAAGAAACATTACAATTAAAATGTATATGTCAAGTATAATAAAAACACGGATATGAAATAC
TCAGATTTCTTGCAGTTTTGGGTTATGCTGTTTGGGCCAAGTCTGTAAAACGCTAGCATTTGAT
TTTGATTATGTAGTGTATCTAGCCCTTGGGCCTTGTTACACACCAATAAAGAAGTTTGTACTCA
AGCAGAGGGGGTGACACATCTCACTCTGCTGCTTCTTAATAAATGTATGTGCGAGCA

hide sequence

RefSeq Acc Id:

XM_036159851 ⟹ XP_036015744

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	113,606,708 - 113,659,329 (-)	NCBI

Sequence:

show sequence

GATGCAGGTGATGCGGTCCGACTTGTCGTTCAGCTGAAAGCGGGAGTGCTTGGGTTCCTTGGGT
GTGGGGGAGCATGCCCTTCAGAAACCCTAGCTGGGGTCAGACAAAGGATGGATGCGGGGATTAC
AGGGGGTGGTTATAAATAAGGGGTGGGGGTGGAGTTCCGAGAGCAGCGATTGGGTAGTTCATCC
GTGGGCTAGCCAGTAAAGAAAACATCCTGTATTCGGAGTTCATGAAGAAAGATGGAGATGATGG
AGCCTGGTGCCCGCATCCAGCCCTTTTATCACAGCGGTAGATTGTGCTGTTAAAATAGCGGTCC
TTGGCTCTTTGAAGAGCATGGTTTTAATGTCTGTGAGTTGCAAGGAAAGGCCGTTAGCTGCAGA
CAGATAAAATGAAGTATTTGTTTTAGGGAAGATATTTGGCTTGTTCCCTACCTTTTTATTCCCT
ATTCCCGTGTGAATGCTCAAAAGGGTTTATCTGACTATGGCCTGAAGCACCCATCCTGAACGAG
CAGCTGCCAGGGAAGCTGTGTGAAAACTGTTTCCTTGTTCAGCTTCCCGTGGCTTCTACGGACA
CCAACATTAACTCTATAAGATAGATTGTTGCTATCCTTGGTCTGTAGAAAAGGAGGCTGAGGAA
CTTGCCCAGGAAGACCTAGCTGCGGTTTCCTACCTGGCTTGGACACAAAGCAAACCTCTAGGAA
TTTTTCATTTGAGTCTCCTTTCAGGGTGGTCCTTCAGCCTCAACTTGTTAAAAATGGCCTCAAG
GCTGGTCTCTGCTATGCTATCTGGCCTTTTGTTTTGGTTGATGTTTGAGTGGAATCCAGCATTC
GCTTATAGTCCACGGACCCCTGACCGGGTCTCAGAGACAGACATCCAGAGGCTGCTTCATGGGG
TTATGGAGCAGCTGGGCATTGCCAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCT
TGTTGGGCCACAGAGCATCGAAGGGGGAGCTCACGAGGGTCTTCAGCATCTGGGTCCTTTTGGC
AACATCCCCAACATAGTGGCAGAGTTGACTGGTGACAACATTCCTAAGGACTTCAGTGAGGATC
AAGGCTACCCAGACCCTCCAAATCCCTGTCCTCTTGGGAAAACTGCTGATGATGGATGTCTAGA
AAACGCCCCCGACACTGCAGAGTTCAGCCGAGAATTCCAGTTAGACCAGCACCTTTTTGATCCA
GAACATGACTACCCAGGTTTGGGCAAGTGGAACAAGAAACTCCTTTATGAGAAAATGAAGGGAG
GACAGAGGCGGAAGCGGAGGAGTGTCAATCCCTATCTACAAGGAAAGAGGTTGGACAATGTTGT
GGCAAAGAAATCTGTCCCCCACTTCTCAGAAGAGGAGAAGGAAGCAGAATAAAGAGAAGACAGT
ATGTAGAAACCCATCCAATGCTTATGTGCATGTTCATAGAGCCCGTGAGTGACAGCATGCATTT
TACATATTTATGGATGAAAAGCAGCTGTCCTTGCCTCCATACCAATGCCTGTGCTTTCTGCTAC
ATTAGAATAAAAGCTCCTTCTCTTTGGGGGATTTTTTTGATGTGGATCTGCAAGAAACATTACA
ATTAAAATGTATATGTCAAGTATAATAAAAACACGGATATGAAATACTCAGATTTCTTGCAGTT
TTGGGTTATGCTGTTTGGGCCAAGTCTGTAAAACGCTAGCATTTGATTTTGATTATGTAGTGTA
TCTAGCCCTTGGGCCTTGTTACACACCAATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGACAC
ATCTCACTCTGCTGCTTCTTAATAAATGTATGTGCGAGCATT

hide sequence

RefSeq Acc Id:

XM_036159857 ⟹ XP_036015750

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	113,606,708 - 113,659,329 (-)	NCBI

Sequence:

show sequence

GATGCAGGTGATGCGGTCCGACTTGTCGTTCAGCTGAAAGCGGGAGTGCTTGGGTTCCTTGGGT
GTGGGGGAGCATGCCCTTCAGAAACCCTAGCTGGGGTCAGACAAAGGATGGATGCGGGGATTAC
AGGGGGTGGTTATAAATAAGGGGTGGGGGTGGAGTTCCGAGAGCAGCGATTGGGTAGTTCATCC
GTGGGCTAGCCAGTAAAGAAAACATCCTGTATTCGGAGTTCATGAAGAAAGATGGAGATGATGG
AGCCTGGTGCCCGCATCCAGCCCTTTTATCACAGCGGTAGATTGTGCTGTTAAAATAGCGGTCC
TTGGCTCTTTGAAGAGCATGGTTTTAATGTCTGTGAGTTGCAAGGAAAGGCCGTTAGCTGCAGA
CAGATAAAATGAAGTATTTGTTTTAGGGAAGATATTTGGCTTGTTCCCTACCTTTTTATTCCCT
ATTCCCGTGTGAATGCTCAAAAGGGTTTATCTGACTATGGCCTGAAGCACCCATCCTGAACGAG
CAGCTGCCAGGGAAGCTGTGTGAAAACTGTTTCCTTGTTCAGCTTCCCGTGGCTTCTACGGACA
CCAACATGTTAAAAATGGCCTCAAGGCTGGTCTCTGCTATGCTATCTGGCCTTTTGTTTTGGTT
GATGTTTGAGTGGAATCCAGCATTCGCTTATAGTCCACGGACCCCTGACCGGGTCTCAGAGACA
GACATCCAGAGGCTGCTTCATGGGGTTATGGAGCAGCTGGGCATTGCCAGGCCACGCGTGGAGT
ACCCGGCTCACCAGGCCATGAATCTTGTTGGGCCACAGAGCATCGAAGGGGGAGCTCACGAGGG
TCTTCAGCATCTGGGTCCTTTTGGCAACATCCCCAACATAGTGGCAGAGTTGACTGGTGACAAC
ATTCCTAAGGACTTCAGTGAGGATCAAGGCTACCCAGACCCTCCAAATCCCTGTCCTCTTGGGA
AAACTGCTGATGATGGATGTCTAGAAAACGCCCCCGACACTGCAGAGTTCAGCCGAGAATTCCA
GTTAGACCAGCACCTTTTTGATCCAGAACATGACTACCCAGGTTTGGGCAAGTGGAACAAGAAA
CTCCTTTATGAGAAAATGAAGGGAGGACAGAGGCGGAAGCGGAGGAGTGTCAATCCCTATCTAC
AAGGAAAGAGGTTGGACAATGTTGTGGCAAAGAAATCTGTCCCCCACTTCTCAGAAGAGGAGAA
GGAAGCAGAATAAAGAGAAGACAGTATGTAGAAACCCATCCAATGCTTATGTGCATGTTCATAG
AGCCCGTGAGTGACAGCATGCATTTTACATATTTATGGATGAAAAGCAGCTGTCCTTGCCTCCA
TACCAATGCCTGTGCTTTCTGCTACATTAGAATAAAAGCTCCTTCTCTTTGGGGGATTTTTTTG
ATGTGGATCTGCAAGAAACATTACAATTAAAATGTATATGTCAAGTATAATAAAAACACGGATA
TGAAATACTCAGATTTCTTGCAGTTTTGGGTTATGCTGTTTGGGCCAAGTCTGTAAAACGCTAG
CATTTGATTTTGATTATGTAGTGTATCTAGCCCTTGGGCCTTGTTACACACCAATAAAGAAGTT
TGTACTCAAGCAGAGGGGGTGACACATCTCACTCTGCTGCTTCTTAATAAATGTATGTGCGAGC
ATT

hide sequence

RefSeq Acc Id:

XM_036159860 ⟹ XP_036015753

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	113,606,708 - 113,659,343 (-)	NCBI

Sequence:

show sequence

GTGAGTTCCGCAGTGATGCAGGTGATGCGGTCCGACTTGTCGTTCAGCTGAAAGCGGGAGTGCT
TGGGTTCCTTGGGTGTGGGGGAGCATGCCCTTCAGAAACCCTAGCTGGGGTCAGACAAAGGATG
GATGCGGGGATTACAGGGGGTGGTTATAAATAAGGGGTGGGGGTGGAGTTCCGAGAGCAGCGAT
TGGGTAGTTCATCCGTGGGCTAGCCAGTAAAGAAAACATCCTGTATTCGGAGTTCATGAAGAAA
GATGGAGATGATGGAGCCTGGTGCCCGCATCCAGCCCTTTTATCACAGCGGTAGATTGTGCTGT
TAAAATAGCGGTCCTTGGCTCTTTGAAGAGCATGGTTTTAATGTCTGTGAGTTGCAAGGAAAGG
CCGTTAGCTGCAGACAGATAAAATGAAGTATTTGTTTTAGGGAAGATATTTGGCTTGTTCCCTA
CCTTTTTATTCCCTATTCCCGTGTGAATGCTCAAAAGGGTTTATCTGACTATGGCCTGAAGCAC
CCATCCTGAACGAGCAGCTGCCAGGGAAGCTGTGTGAAAACTGTTTCCTTGTTCAGCTTCCCGT
GGCTTCTACGGACACCAACATCGGTTTCCTACCTGGCTTGGACACAAAGCAAACCTCTAGGAAT
TTTTCATTTGAGTCTCCTTTCAGGGTGGTCCTTCAGCCTCAACTTGTTAAAAATGGCCTCAAGG
CTGGTCTCTGCTATGCTATCTGGCCTTTTGTTTTGGTTGATGTTTGAGTGGAATCCAGCATTCG
CTTATAGTCCACGGACCCCTGACCGGGTCTCAGAGACAGACATCCAGAGGCTGCTTCATGGGGT
TATGGAGCAGCTGGGCATTGCCAGGCCACGCGTGGAGTACCCGGCTCACCAGGCCATGAATCTT
GTTGGGCCACAGAGCATCGAAGGGGGAGCTCACGAGGGTCTTCAGCATCTGGGTCCTTTTGGCA
ACATCCCCAACATAGTGGCAGAGTTGACTGGTGACAACATTCCTAAGGACTTCAGTGAGGATCA
AGGCTACCCAGACCCTCCAAATCCCTGTCCTCTTGGGAAAACTGCTGATGATGGATGTCTAGAA
AACGCCCCCGACACTGCAGAGTTCAGCCGAGAATTCCAGTTAGACCAGCACCTTTTTGATCCAG
AACATGACTACCCAGGTTTGGGCAAGTGGAACAAGAAACTCCTTTATGAGAAAATGAAGGGAGG
ACAGAGGCGGAAGCGGAGGAGTGTCAATCCCTATCTACAAGGAAAGAGGTTGGACAATGTTGTG
GCAAAGAAATCTGTCCCCCACTTCTCAGAAGAGGAGAAGGAAGCAGAATAAAGAGAAGACAGTA
TGTAGAAACCCATCCAATGCTTATGTGCATGTTCATAGAGCCCGTGAGTGACAGCATGCATTTT
ACATATTTATGGATGAAAAGCAGCTGTCCTTGCCTCCATACCAATGCCTGTGCTTTCTGCTACA
TTAGAATAAAAGCTCCTTCTCTTTGGGGGATTTTTTTGATGTGGATCTGCAAGAAACATTACAA
TTAAAATGTATATGTCAAGTATAATAAAAACACGGATATGAAATACTCAGATTTCTTGCAGTTT
TGGGTTATGCTGTTTGGGCCAAGTCTGTAAAACGCTAGCATTTGATTTTGATTATGTAGTGTAT
CTAGCCCTTGGGCCTTGTTACACACCAATAAAGAAGTTTGTACTCAAGCAGAGGGGGTGACACA
TCTCACTCTGCTGCTTCTTAATAAATGTATGTGCGAGCATT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001407866	(Get FASTA)	NCBI Sequence Viewer
	NP_001407867	(Get FASTA)	NCBI Sequence Viewer
	NP_001407868	(Get FASTA)	NCBI Sequence Viewer
	NP_001407871	(Get FASTA)	NCBI Sequence Viewer
	NP_001407872	(Get FASTA)	NCBI Sequence Viewer
	NP_001407873	(Get FASTA)	NCBI Sequence Viewer
	NP_001407874	(Get FASTA)	NCBI Sequence Viewer
	NP_001407875	(Get FASTA)	NCBI Sequence Viewer
	NP_001407876	(Get FASTA)	NCBI Sequence Viewer
	NP_033188	(Get FASTA)	NCBI Sequence Viewer
	XP_036015740	(Get FASTA)	NCBI Sequence Viewer
	XP_036015741	(Get FASTA)	NCBI Sequence Viewer
	XP_036015742	(Get FASTA)	NCBI Sequence Viewer
	XP_036015744	(Get FASTA)	NCBI Sequence Viewer
	XP_036015750	(Get FASTA)	NCBI Sequence Viewer
	XP_036015753	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH29021	(Get FASTA)	NCBI Sequence Viewer
	AAX90598	(Get FASTA)	NCBI Sequence Viewer
	BAB23956	(Get FASTA)	NCBI Sequence Viewer
	BAB27927	(Get FASTA)	NCBI Sequence Viewer
	BAB30765	(Get FASTA)	NCBI Sequence Viewer
	BAB31669	(Get FASTA)	NCBI Sequence Viewer
	BAC27581	(Get FASTA)	NCBI Sequence Viewer
	BAE36461	(Get FASTA)	NCBI Sequence Viewer
	BAE36474	(Get FASTA)	NCBI Sequence Viewer
	CAA33835	(Get FASTA)	NCBI Sequence Viewer
	EDL27856	(Get FASTA)	NCBI Sequence Viewer
	EDL27857	(Get FASTA)	NCBI Sequence Viewer
	P12961	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_033188 ⟸ NM_009162
- Peptide Label:	precursor
- UniProtKB:	Q9DB14 (UniProtKB/Swiss-Prot), P12961 (UniProtKB/Swiss-Prot), Q3TT51 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASRLVSAMLSGLLFWLMFEWNPAFAYSPRTPDRVSETDIQRLLHGVMEQLGIARPRVEYPAHQ AMNLVGPQSIEGGAHEGLQHLGPFGNIPNIVAELTGDNIPKDFSEDQGYPDPPNPCPLGKTADD GCLENAPDTAEFSREFQLDQHLFDPEHDYPGLGKWNKKLLYEKMKGGQRRKRRSVNPYLQGKRL DNVVAKKSVPHFSEEEKEAE hide sequence

RefSeq Acc Id:

ENSMUSP00000024005 ⟸ ENSMUST00000024005

RefSeq Acc Id:	XP_036015753 ⟸ XM_036159860
- Peptide Label:	isoform X1
- UniProtKB:	Q9DB14 (UniProtKB/Swiss-Prot), Q3TT51 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_036015750 ⟸ XM_036159857
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_036015740 ⟸ XM_036159847
- Peptide Label:	isoform X1
- UniProtKB:	Q9DB14 (UniProtKB/Swiss-Prot), Q3TT51 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_036015744 ⟸ XM_036159851
- Peptide Label:	isoform X1
- UniProtKB:	Q9DB14 (UniProtKB/Swiss-Prot), Q3TT51 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_036015741 ⟸ XM_036159848
- Peptide Label:	isoform X1
- UniProtKB:	Q9DB14 (UniProtKB/Swiss-Prot), Q3TT51 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_036015742 ⟸ XM_036159849
- Peptide Label:	isoform X1
- UniProtKB:	Q9DB14 (UniProtKB/Swiss-Prot), Q3TT51 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P12961-F1-model_v2	AlphaFold	P12961	1-212	view protein structure

Promoters

RGD ID:

6832652

Promoter ID:

MM_KWN:31086

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell

Transcripts:

OTTMUST00000036027, OTTMUST00000036028

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	113,668,949 - 113,669,449 (-)	MPROMDB

RGD ID:

6878230

Promoter ID:

EPDNEW_M2566

Type:

initiation region

Name:

Scg5_1

Description:

Mus musculus secretogranin V , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	113,829,029 - 113,829,089	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:98289	AgrOrtholog
Ensembl Genes	ENSMUSG00000023236	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000024005	ENTREZGENE
	ENSMUSP00000024005.8	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000024005	ENTREZGENE
	ENSMUST00000024005.8	UniProtKB/Swiss-Prot
InterPro	Secretogranin_V	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:20394	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:98289	ENTREZGENE
NCBI Gene	20394	ENTREZGENE
PANTHER	NEUROENDOCRINE PROTEIN 7B2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12738	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Secretogranin_V	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Scg5	PhenoGen
UniProt	7B2_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q3TT51	ENTREZGENE, UniProtKB/TrEMBL
	Q9DB14	ENTREZGENE
UniProt Secondary	Q8CCZ3	UniProtKB/Swiss-Prot
	Q9CYP0	UniProtKB/Swiss-Prot
	Q9D2P6	UniProtKB/Swiss-Prot
	Q9DB14	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

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