Slc23a1 (solute carrier family 23 (nucleobase transporters), member 1) - Rat Genome Database

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Gene: Slc23a1 (solute carrier family 23 (nucleobase transporters), member 1) Mus musculus
Analyze
Symbol: Slc23a1
Name: solute carrier family 23 (nucleobase transporters), member 1
RGD ID: 731389
MGI Page MGI
Description: Enables L-ascorbate:sodium symporter activity; L-ascorbic acid transmembrane transporter activity; and urate transmembrane transporter activity. Involved in L-ascorbic acid transmembrane transport; brain development; and lung development. Located in basal plasma membrane and cytoplasm. Is expressed in several structures, including alimentary system; liver; and urinary system. Orthologous to human SLC23A1 (solute carrier family 23 member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: D18Ucl; D18Ucla2; Na(+)/L-ascorbic acid transporter 1; Slc2; Slc23a2; sodium-dependent vitamin C transporter 1; solute carrier family 23 (nucleobase transporters), member 2; solute carrier family 23 member 1; SVC; SVCT1; yolk sac permease-like molecule 3; YS; YSPL3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391835,747,657 - 35,762,900 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1835,747,657 - 35,760,297 (-)EnsemblGRCm39 Ensembl
GRCm381835,604,224 - 35,629,845 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1835,614,604 - 35,627,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv371835,774,258 - 35,786,881 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361835,740,578 - 35,753,192 (-)NCBIMGSCv36mm8
MGSCv361835,794,115 - 35,806,597 (-)NCBIMGSCv36mm8
Celera1836,070,745 - 36,083,392 (-)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1-dichloroethene  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
alpha-Zearalanol  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
clofibrate  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cyproconazole  (EXP)
Dibutyl phosphate  (ISO)
diclofenac  (EXP)
dioxygen  (EXP)
epoxiconazole  (EXP)
flutamide  (ISO)
inulin  (EXP)
L-ascorbic acid  (EXP,ISO)
L-ethionine  (ISO)
methapyrilene  (ISO)
N-nitrosodimethylamine  (ISO)
O-methyleugenol  (ISO)
omeprazole  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
pentanal  (ISO)
pentane-2,3-dione  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
pravastatin  (EXP,ISO)
progesterone  (EXP)
propanal  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
taurocholic acid  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
trovafloxacin  (EXP)
tunicamycin  (EXP)
ursodeoxycholic acid  (ISO)
valproic acid  (ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
apical plasma membrane  (IBA,ISO,ISS)
basal plasma membrane  (IDA,ISO)
brush border  (ISO)
cytoplasm  (IDA,ISO)
membrane  (IEA)
plasma membrane  (IDA,ISO,ISS)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Linkage mapping of 40 randomly isolated liver cDNA clones in the mouse. Warden CH, etal., Genomics 1993 Nov;18(2):295-307.
Additional References at PubMed
PMID:8827514   PMID:8889548   PMID:9321482   PMID:9804989   PMID:10349636   PMID:10395795   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11984597   PMID:12477932   PMID:14681479  
PMID:15333707   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17664139   PMID:17978498   PMID:18287559   PMID:18668520   PMID:19156209   PMID:20122894   PMID:20200446   PMID:21267068  
PMID:21386911   PMID:21677750   PMID:21873635   PMID:22990596   PMID:27463513   PMID:27820600   PMID:28177761   PMID:33549889   PMID:36749388   PMID:36914666  


Genomics

Comparative Map Data
Slc23a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391835,747,657 - 35,762,900 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1835,747,657 - 35,760,297 (-)EnsemblGRCm39 Ensembl
GRCm381835,604,224 - 35,629,845 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1835,614,604 - 35,627,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv371835,774,258 - 35,786,881 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361835,740,578 - 35,753,192 (-)NCBIMGSCv36mm8
MGSCv361835,794,115 - 35,806,597 (-)NCBIMGSCv36mm8
Celera1836,070,745 - 36,083,392 (-)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.17NCBI
SLC23A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385139,367,196 - 139,385,676 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5139,367,196 - 139,384,553 (-)EnsemblGRCh38hg38GRCh38
GRCh375138,702,885 - 138,718,986 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365138,730,787 - 138,746,900 (-)NCBINCBI36Build 36hg18NCBI36
Build 345138,730,787 - 138,746,900NCBI
Celera5134,824,593 - 134,840,618 (-)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5133,892,618 - 133,908,788 (-)NCBIHuRef
CHM1_15138,135,498 - 138,151,676 (-)NCBICHM1_1
T2T-CHM13v2.05139,893,271 - 139,911,881 (-)NCBIT2T-CHM13v2.0
Slc23a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81827,490,549 - 27,504,563 (-)NCBIGRCr8
mRatBN7.21827,214,940 - 27,230,564 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1827,216,281 - 27,230,697 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1827,343,879 - 27,355,815 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01828,106,018 - 28,117,920 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01827,440,904 - 27,452,806 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01828,413,910 - 28,428,133 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1828,414,009 - 28,428,117 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01828,127,118 - 28,141,110 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41828,238,953 - 28,250,889 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11828,265,423 - 28,277,535 (-)NCBI
Celera1826,950,004 - 26,961,940 (-)NCBICelera
Cytogenetic Map18p11NCBI
Slc23a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554181,176,000 - 1,186,940 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554181,176,390 - 1,192,270 (+)NCBIChiLan1.0ChiLan1.0
SLC23A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24134,638,723 - 134,649,462 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15132,775,959 - 132,789,014 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05134,737,344 - 134,756,153 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15140,859,975 - 140,877,214 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5140,859,984 - 140,877,214 (-)Ensemblpanpan1.1panPan2
SLC23A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1234,694,064 - 34,708,498 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl234,698,838 - 34,708,412 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha231,801,133 - 31,809,319 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0235,148,002 - 35,162,589 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl235,152,908 - 35,162,973 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1232,205,366 - 32,213,552 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,071,664 - 33,079,850 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,823,283 - 33,831,469 (-)NCBIUU_Cfam_GSD_1.0
Slc23a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213153,138,372 - 153,159,132 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365318,457,957 - 8,471,258 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365318,457,779 - 8,471,244 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC23A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2141,258,323 - 141,276,442 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12141,258,318 - 141,277,555 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22147,081,831 - 147,107,402 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC23A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12342,040,163 - 42,056,593 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2342,044,590 - 42,055,831 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603435,832,046 - 35,861,341 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc23a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474332,174,922 - 32,186,697 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474332,169,051 - 32,186,618 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc23a1
419 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1311
Count of miRNA genes:657
Interacting mature miRNAs:820
Transcripts:ENSMUST00000025212, ENSMUST00000123242, ENSMUST00000150877, ENSMUST00000153293
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
1301950Otx2m1_morthodenticle homolog 2 (Drosophila) modifier 1 (mouse)Not determined182156868236187740Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse

Markers in Region
D18SLACGT1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381835,628,602 - 35,628,752UniSTSGRCm38
MGSCv371835,788,256 - 35,788,406UniSTSGRCm37
Celera1836,084,767 - 36,084,917UniSTS
Cytogenetic Map18B2UniSTS
cM Map1818.0UniSTS
AU045972  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381835,616,943 - 35,617,099UniSTSGRCm38
MGSCv371835,776,597 - 35,776,753UniSTSGRCm37
Celera1836,073,095 - 36,073,251UniSTS
Cytogenetic Map18B2UniSTS
cM Map1818.0UniSTS
Slc23a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18B2UniSTS
cM Map1819.17UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000025212   ⟹   ENSMUSP00000025212
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1835,747,657 - 35,760,297 (-)Ensembl
GRCm38.p6 Ensembl1835,614,604 - 35,627,244 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1835,753,123 - 35,755,659 (-)Ensembl
GRCm38.p6 Ensembl1835,620,070 - 35,622,606 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236196
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1835,755,877 - 35,760,289 (-)Ensembl
GRCm38.p6 Ensembl1835,622,824 - 35,627,236 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237305   ⟹   ENSMUSP00000158090
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1835,752,427 - 35,760,249 (-)Ensembl
GRCm38.p6 Ensembl1835,619,374 - 35,627,196 (-)Ensembl
RefSeq Acc Id: NM_011397   ⟹   NP_035527
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391835,747,657 - 35,760,280 (-)NCBI
GRCm381835,614,604 - 35,627,227 (-)NCBI
MGSCv371835,774,258 - 35,786,881 (-)RGD
Celera1836,070,745 - 36,083,392 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017317851   ⟹   XP_017173340
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391835,748,261 - 35,762,900 (-)NCBI
GRCm381835,615,208 - 35,629,845 (-)NCBI
Sequence:
RefSeq Acc Id: NP_035527   ⟸   NM_011397
- UniProtKB: Q9Z2J0 (UniProtKB/Swiss-Prot),   Q91WR7 (UniProtKB/Swiss-Prot),   Q8C3M2 (UniProtKB/Swiss-Prot),   Q3TNA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017173340   ⟸   XM_017317851
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000158090   ⟸   ENSMUST00000237305
Ensembl Acc Id: ENSMUSP00000025212   ⟸   ENSMUST00000025212

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z2J0-F1-model_v2 AlphaFold Q9Z2J0 1-605 view protein structure

Promoters
RGD ID:13677424
Promoter ID:EPDNEW_M22861
Type:initiation region
Name:Slc23a1_1
Description:Mus musculus solute carrier family 23 , member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381835,627,237 - 35,627,297EPDNEW
RGD ID:6829531
Promoter ID:MM_KWN:24930
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000058545
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361835,781,921 - 35,783,072 (-)MPROMDB
RGD ID:6849089
Promoter ID:MM_XEF:3419
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:NM_001109957,   NM_001133751,   NM_001173499
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361835,785,916 - 35,786,416 (-)MPROMDB
RGD ID:6829529
Promoter ID:MM_KWN:24931
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:OTTMUST00000058542,   OTTMUST00000058543,   OTTMUST00000058544
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361835,786,711 - 35,787,211 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1341903 AgrOrtholog
Ensembl Genes ENSMUSG00000024354 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025212 ENTREZGENE
  ENSMUST00000025212.8 UniProtKB/Swiss-Prot
  ENSMUST00000237305.2 UniProtKB/TrEMBL
InterPro Xant/urac/vitC UniProtKB/Swiss-Prot
KEGG Report mmu:20522 UniProtKB/Swiss-Prot
MGD MGI:1341903 ENTREZGENE
NCBI Gene Slc23a1 ENTREZGENE
PANTHER PTHR11119:SF21 UniProtKB/Swiss-Prot
  XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER UniProtKB/Swiss-Prot
Pfam Xan_ur_permease UniProtKB/Swiss-Prot
PhenoGen Slc23a1 PhenoGen
UniProt A0A494BAL1_MOUSE UniProtKB/TrEMBL
  Q3TNA2 ENTREZGENE
  Q8C3M2 ENTREZGENE
  Q91WR7 ENTREZGENE
  Q9Z2J0 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TNA2 UniProtKB/Swiss-Prot
  Q8C3M2 UniProtKB/Swiss-Prot
  Q91WR7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Slc23a1  solute carrier family 23 (nucleobase transporters), member 1  D18Ucla2  DNA segment, Chr 18, University of California at Los Angeles 2  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 D18Ucla2  DNA segment, Chr 18, University of California at Los Angeles 2  Slc23a1  solute carrier family 23 (nucleobase transporters), member 1  Symbol and/or name change 5135510 APPROVED