E2f5 (E2F transcription factor 5) - Rat Genome Database

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Gene: E2f5 (E2F transcription factor 5) Mus musculus
Analyze
Symbol: E2f5
Name: E2F transcription factor 5
RGD ID: 731058
MGI Page MGI
Description: Enables DNA-binding transcription factor activity. Acts upstream of or within animal organ morphogenesis and regulation of DNA-templated transcription. Located in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; eye; and genitourinary system. Used to study hydrocephalus. Human ortholog(s) of this gene implicated in prostate carcinoma. Orthologous to human E2F5 (E2F transcription factor 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU024671; E2F-5; transcription factor E2F5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39314,638,370 - 14,671,369 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl314,643,701 - 14,671,369 (+)EnsemblGRCm39 Ensembl
GRCm38314,578,602 - 14,606,309 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl314,578,641 - 14,606,309 (+)EnsemblGRCm38mm10GRCm38
MGSCv37314,578,671 - 14,606,309 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36314,555,415 - 14,583,053 (+)NCBIMGSCv36mm8
Celera314,586,826 - 14,614,448 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map33.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methoxyethanol  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
Benoxacor  (EXP)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (EXP)
carbamazepine  (ISO)
carbaryl  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cordycepin  (EXP)
coumestrol  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
daunorubicin  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
diclofenac  (ISO)
dieldrin  (ISO)
emodin  (ISO)
Enterolactone  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
eugenol  (ISO)
flavonoids  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
GW 7647  (ISO)
hydrogen chloride  (ISO)
Lasiocarpine  (ISO)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
methylseleninic acid  (ISO)
monocrotaline  (ISO)
nicotine  (ISO)
p-menthan-3-ol  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phenylephrine  (ISO)
potassium chromate  (ISO)
potassium dichromate  (EXP)
quercetin  (ISO)
riddelliine  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
silver(1+) nitrate  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
tunicamycin  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. E2F4 and E2F5 play an essential role in pocket protein-mediated G1 control. Gaubatz S, etal., Mol Cell 2000 Sep;6(3):729-35.
2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. CDK13 upregulation-induced formation of the positive feedback loop among circCDK13, miR-212-5p/miR-449a and E2F5 contributes to prostate carcinogenesis. Qi JC, etal., J Exp Clin Cancer Res. 2021 Jan 4;40(1):2. doi: 10.1186/s13046-020-01814-5.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7542760   PMID:9149906   PMID:9376316   PMID:9426200   PMID:9553039   PMID:9694791   PMID:10349636   PMID:10783242   PMID:10853823   PMID:10913163   PMID:10922068   PMID:11042159  
PMID:11076861   PMID:11217851   PMID:11591818   PMID:12466851   PMID:12477932   PMID:14681479   PMID:15448153   PMID:15782199   PMID:15855772   PMID:16141072   PMID:16141073   PMID:16172982  
PMID:16325481   PMID:16482218   PMID:17210791   PMID:17255939   PMID:17295207   PMID:17385710   PMID:18255021   PMID:18287559   PMID:18385796   PMID:19457859   PMID:19741146   PMID:19864318  
PMID:20059953   PMID:20392944   PMID:20412781   PMID:21194568   PMID:21267068   PMID:21873635   PMID:22403008   PMID:22714890   PMID:23064266   PMID:24952961   PMID:24982181   PMID:25191221  
PMID:25422988   PMID:26367869   PMID:26825228   PMID:26902285   PMID:28923932   PMID:30220967   PMID:34246625   PMID:34746147  


Genomics

Comparative Map Data
E2f5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39314,638,370 - 14,671,369 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl314,643,701 - 14,671,369 (+)EnsemblGRCm39 Ensembl
GRCm38314,578,602 - 14,606,309 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl314,578,641 - 14,606,309 (+)EnsemblGRCm38mm10GRCm38
MGSCv37314,578,671 - 14,606,309 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36314,555,415 - 14,583,053 (+)NCBIMGSCv36mm8
Celera314,586,826 - 14,614,448 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map33.1NCBI
E2F5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38885,177,154 - 85,214,518 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl885,177,154 - 85,217,158 (+)EnsemblGRCh38hg38GRCh38
GRCh37886,089,389 - 86,126,753 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36886,276,871 - 86,314,005 (+)NCBINCBI36Build 36hg18NCBI36
Build 34886,276,876 - 86,314,002NCBI
Celera882,094,939 - 82,131,798 (+)NCBICelera
Cytogenetic Map8q21.2NCBI
HuRef881,583,766 - 81,620,799 (+)NCBIHuRef
CHM1_1886,141,195 - 86,178,340 (+)NCBICHM1_1
T2T-CHM13v2.0885,615,754 - 85,653,117 (+)NCBIT2T-CHM13v2.0
E2f5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8288,718,567 - 88,734,143 (-)NCBIGRCr8
mRatBN7.2286,997,331 - 87,012,908 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl286,997,332 - 87,012,990 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx293,326,917 - 93,342,470 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0291,447,920 - 91,463,473 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0286,504,739 - 86,520,292 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0288,350,764 - 88,366,913 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl288,351,361 - 88,366,115 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02108,121,172 - 108,137,052 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4288,346,236 - 88,361,733 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1288,291,198 - 88,306,581 (-)NCBI
Celera282,587,783 - 82,594,655 (-)NCBICelera
Cytogenetic Map2q23NCBI
E2f5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,145,570 - 3,155,233 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,131,282 - 3,155,872 (+)NCBIChiLan1.0ChiLan1.0
E2F5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27100,914,168 - 100,950,576 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1876,546,751 - 76,583,160 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0881,703,423 - 81,739,827 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1883,314,197 - 83,350,220 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl883,314,176 - 83,350,220 (+)Ensemblpanpan1.1panPan2
E2F5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12931,745,211 - 31,754,940 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2931,746,384 - 31,754,265 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2932,010,179 - 32,037,439 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02931,876,597 - 31,904,670 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2931,876,391 - 31,904,682 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12931,931,443 - 31,958,633 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02931,949,625 - 31,977,358 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02932,333,466 - 32,361,295 (+)NCBIUU_Cfam_GSD_1.0
E2f5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530347,639,377 - 47,667,600 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936544125,360 - 152,670 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936544124,243 - 153,325 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
E2F5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl451,478,050 - 51,512,718 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1451,478,399 - 51,512,617 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2456,493,996 - 56,528,084 (-)NCBISscrofa10.2Sscrofa10.2susScr3
E2F5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1880,542,390 - 80,587,888 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl880,542,580 - 80,587,226 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603960,512,505 - 60,557,770 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
E2f5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247446,468,512 - 6,492,356 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in E2f5
1291 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:457
Count of miRNA genes:191
Interacting mature miRNAs:224
Transcripts:ENSMUST00000029069, ENSMUST00000165922
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
12738410Lfibq2_mliver fibrosis QTL 2 (mouse)31206506020755242Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
12798540Scvg2_msubcutaneous vessel growth QTL 2 (mouse)3744981526249645Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
1301256Skmw1_mskeletal muscle weight 1 (mouse)Not determined3125786432Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse
13452403Rmerr1_mradial maze error rate 1 (mouse)31266506015954164Mouse

Markers in Region
AU024671  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38314,605,930 - 14,606,010UniSTSGRCm38
MGSCv37314,605,930 - 14,606,010UniSTSGRCm37
Celera314,614,069 - 14,614,149UniSTS
Cytogenetic Map3A1UniSTS
X86925  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38314,605,820 - 14,605,993UniSTSGRCm38
MGSCv37314,605,820 - 14,605,993UniSTSGRCm37
Celera314,613,959 - 14,614,132UniSTS
Cytogenetic Map3A1UniSTS
Whitehead_YAC3 UniSTS
E2f5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3A1UniSTS
cM Map3 UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000029069   ⟹   ENSMUSP00000029069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl314,643,701 - 14,671,369 (+)Ensembl
GRCm38.p6 Ensembl314,578,641 - 14,606,309 (+)Ensembl
Ensembl Acc Id: ENSMUST00000165922   ⟹   ENSMUSP00000127877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl314,643,731 - 14,671,368 (+)Ensembl
GRCm38.p6 Ensembl314,578,671 - 14,606,308 (+)Ensembl
RefSeq Acc Id: NM_007892   ⟹   NP_031918
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39314,643,675 - 14,671,369 (+)NCBI
GRCm38314,578,671 - 14,606,309 (+)NCBI
MGSCv37314,578,671 - 14,606,309 (+)RGD
Celera314,586,826 - 14,614,448 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530051   ⟹   XP_006530114
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39314,638,370 - 14,671,362 (+)NCBI
GRCm38314,578,604 - 14,606,302 (+)NCBI
Sequence:
RefSeq Acc Id: NP_031918   ⟸   NM_007892
- UniProtKB: Q99LK0 (UniProtKB/Swiss-Prot),   Q61502 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530114   ⟸   XM_006530051
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000029069   ⟸   ENSMUST00000029069
Ensembl Acc Id: ENSMUSP00000127877   ⟸   ENSMUST00000165922

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61502-F1-model_v2 AlphaFold Q61502 1-335 view protein structure

Promoters
RGD ID:6833669
Promoter ID:MM_KWN:33791
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:NM_007892
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36314,578,519 - 14,579,019 (+)MPROMDB
RGD ID:6880254
Promoter ID:EPDNEW_M3578
Type:initiation region
Name:E2f5_1
Description:Mus musculus E2F transcription factor 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3579  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38314,578,663 - 14,578,723EPDNEW
RGD ID:6880256
Promoter ID:EPDNEW_M3579
Type:initiation region
Name:E2f5_2
Description:Mus musculus E2F transcription factor 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3578  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38314,578,795 - 14,578,855EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105091 AgrOrtholog
Ensembl Genes ENSMUSG00000027552 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000029069 ENTREZGENE
  ENSMUST00000029069.13 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot
  6.10.250.540 UniProtKB/Swiss-Prot
InterPro E2F UniProtKB/Swiss-Prot
  E2F-DP_heterodim UniProtKB/Swiss-Prot
  E2F_CC-MB UniProtKB/Swiss-Prot
  E2F_WHTH_DNA-bd_dom UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report mmu:13559 UniProtKB/Swiss-Prot
MGD MGI:105091 ENTREZGENE
NCBI Gene 13559 ENTREZGENE
PANTHER PTHR12081 UniProtKB/Swiss-Prot
  PTHR12081:SF35 UniProtKB/Swiss-Prot
Pfam E2F_CC-MB UniProtKB/Swiss-Prot
  E2F_TDP UniProtKB/Swiss-Prot
PhenoGen E2f5 PhenoGen
SMART E2F_TDP UniProtKB/Swiss-Prot
Superfamily-SCOP SSF144074 UniProtKB/Swiss-Prot
  SSF46785 UniProtKB/Swiss-Prot
UniProt E2F5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q99LK0 ENTREZGENE
UniProt Secondary Q99LK0 UniProtKB/Swiss-Prot