SLC4A7 (solute carrier family 4 member 7) - Rat Genome Database

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Gene: SLC4A7 (solute carrier family 4 member 7) Homo sapiens
Analyze
Symbol: SLC4A7
Name: solute carrier family 4 member 7
RGD ID: 730989
HGNC Page HGNC:11033
Description: Enables sodium:bicarbonate symporter activity. Involved in cellular response to growth factor stimulus; nucleotide biosynthetic process; and phagosome acidification. Located in basolateral plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: bicarbonate transporter; DKFZp686H168; electroneutral Na/HCO(3) cotransporter; NBC2; NBC3; NBCN1; SBC2; SLC4A6; sodium bicarbonate cotransporter 2; sodium bicarbonate cotransporter 2b; sodium bicarbonate cotransporter 3; solute carrier family 4, sodium bicarbonate cotransporter, member 7
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38327,372,723 - 27,484,384 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl327,372,723 - 27,484,420 (-)EnsemblGRCh38hg38GRCh38
GRCh37327,414,214 - 27,525,875 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36327,389,218 - 27,473,249 (-)NCBINCBI36Build 36hg18NCBI36
Build 34327,389,217 - 27,473,249NCBI
Celera327,350,593 - 27,434,523 (-)NCBICelera
Cytogenetic Map3p24.1NCBI
HuRef327,357,387 - 27,468,725 (-)NCBIHuRef
CHM1_1327,364,200 - 27,475,895 (-)NCBICHM1_1
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (EXP)
(-)-epigallocatechin 3-gallate  (EXP)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (ISO)
acrolein  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP)
alpha-pinene  (EXP)
ammonium chloride  (ISO)
aristolochic acid A  (EXP)
arsenite(3-)  (EXP)
Azoxymethane  (ISO)
benzo[a]pyrene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (EXP)
caffeine  (EXP)
calcitriol  (EXP)
carbamazepine  (EXP)
chromium(6+)  (EXP)
ciglitazone  (EXP)
cisplatin  (EXP)
cobalt dichloride  (EXP)
copper(II) sulfate  (EXP)
coumarin  (EXP)
crocidolite asbestos  (EXP)
cyclosporin A  (EXP)
deoxynivalenol  (EXP)
dexamethasone  (EXP)
dextran sulfate  (ISO)
Dibutyl phosphate  (EXP)
dorsomorphin  (EXP)
elemental selenium  (EXP)
entinostat  (EXP)
ethyl methanesulfonate  (EXP)
fenthion  (ISO)
flavonoids  (ISO)
folic acid  (ISO)
formaldehyde  (EXP)
FR900359  (EXP)
gentamycin  (ISO)
indometacin  (EXP)
ivermectin  (EXP)
lead diacetate  (EXP,ISO)
lead(0)  (EXP)
leflunomide  (EXP)
levetiracetam  (ISO)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
mirex  (ISO)
naphthalene  (ISO)
nickel dichloride  (EXP)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (EXP)
progesterone  (EXP)
quercetin  (EXP)
SB 431542  (EXP)
selenium atom  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
sotorasib  (EXP)
succimer  (ISO)
tamibarotene  (EXP)
testosterone  (ISO)
testosterone enanthate  (EXP)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
trametinib  (EXP)
tributylstannane  (ISO)
trichostatin A  (EXP)
triphenyl phosphate  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (EXP)
vitamin E  (EXP)
vorinostat  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
apical plasma membrane  (IBA,IEA)
basolateral plasma membrane  (IBA,IDA,IEA)
cell projection  (IEA)
cytoplasm  (ISO)
cytoplasmic vesicle  (ISO)
membrane  (IDA,IEA,NAS)
plasma membrane  (IBA,IDA,IEA,IMP,TAS)
stereocilium  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9610397   PMID:10198178   PMID:10347222   PMID:10600945   PMID:12403779   PMID:12444018   PMID:14578046   PMID:14736710   PMID:15144186   PMID:15324660   PMID:16301216   PMID:16344560  
PMID:17353931   PMID:17624982   PMID:17715183   PMID:18976975   PMID:19330027   PMID:20095854   PMID:20145138   PMID:20453838   PMID:20542029   PMID:21224233   PMID:21263130   PMID:21873635  
PMID:21909110   PMID:21909115   PMID:22120673   PMID:22383045   PMID:22907202   PMID:23117855   PMID:23183381   PMID:23535729   PMID:24493630   PMID:24788003   PMID:25241983   PMID:25249183  
PMID:25468996   PMID:25609649   PMID:25737280   PMID:25921289   PMID:26186194   PMID:26439863   PMID:26496610   PMID:26514267   PMID:26638075   PMID:27342126   PMID:27609814   PMID:27717805  
PMID:27784683   PMID:28087731   PMID:28087757   PMID:28514442   PMID:28515276   PMID:28692057   PMID:28986522   PMID:29117863   PMID:29180619   PMID:29395067   PMID:29507755   PMID:29511261  
PMID:29568061   PMID:29779931   PMID:30194290   PMID:30442766   PMID:30639242   PMID:31056421   PMID:31527615   PMID:31586073   PMID:31678930   PMID:31732153   PMID:31871319   PMID:31980649  
PMID:31995728   PMID:32296183   PMID:32620847   PMID:32694731   PMID:32707033   PMID:32788342   PMID:32877691   PMID:33397691   PMID:33417871   PMID:33957083   PMID:33961781   PMID:34079125  
PMID:34315543   PMID:34349018   PMID:34432599   PMID:34597346   PMID:34672954   PMID:34709727   PMID:34745083   PMID:35198878   PMID:35271311   PMID:35384245   PMID:35772404   PMID:35844135  
PMID:36215168   PMID:36237976   PMID:36931259   PMID:36964488   PMID:36976175   PMID:37039101   PMID:37128157   PMID:37478010   PMID:37536630   PMID:37616343   PMID:37774976   PMID:38117590  
PMID:38310186   PMID:38569033   PMID:38891874  


Genomics

Comparative Map Data
SLC4A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38327,372,723 - 27,484,384 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl327,372,723 - 27,484,420 (-)EnsemblGRCh38hg38GRCh38
GRCh37327,414,214 - 27,525,875 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36327,389,218 - 27,473,249 (-)NCBINCBI36Build 36hg18NCBI36
Build 34327,389,217 - 27,473,249NCBI
Celera327,350,593 - 27,434,523 (-)NCBICelera
Cytogenetic Map3p24.1NCBI
HuRef327,357,387 - 27,468,725 (-)NCBIHuRef
CHM1_1327,364,200 - 27,475,895 (-)NCBICHM1_1
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBIT2T-CHM13v2.0
Slc4a7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39147,669,819 - 7,766,808 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl147,669,823 - 7,767,484 (-)EnsemblGRCm39 Ensembl
GRCm381414,703,011 - 14,799,944 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1414,702,279 - 14,799,940 (+)EnsemblGRCm38mm10GRCm38
MGSCv371415,535,539 - 15,632,457 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361413,496,292 - 13,568,779 (+)NCBIMGSCv36mm8
Celera1410,380,221 - 10,477,911 (+)NCBICelera
Cytogenetic Map14A1NCBI
cM Map147.08NCBI
Slc4a7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81513,015,854 - 13,095,485 (-)NCBIGRCr8
mRatBN7.21510,585,307 - 10,664,780 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1510,588,979 - 10,664,781 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1512,726,247 - 12,801,933 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01513,633,596 - 13,709,437 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01511,939,509 - 12,015,197 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01511,832,611 - 11,912,923 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1511,836,286 - 11,912,916 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01515,871,621 - 15,950,530 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41512,071,975 - 12,125,840 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11512,071,974 - 12,125,841 (-)NCBI
Celera1510,601,042 - 10,672,302 (-)NCBICelera
Cytogenetic Map15p16NCBI
Slc4a7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543018,991,301 - 19,067,754 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543018,991,615 - 19,059,590 (-)NCBIChiLan1.0ChiLan1.0
SLC4A7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2227,319,507 - 27,430,994 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1327,324,273 - 27,435,750 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0327,261,155 - 27,373,223 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1327,587,592 - 27,697,280 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl327,591,639 - 27,670,815 (-)Ensemblpanpan1.1panPan2
SLC4A7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12316,710,649 - 16,788,277 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2316,710,701 - 16,785,541 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2316,671,583 - 16,781,327 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02316,973,595 - 17,083,572 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2316,973,651 - 17,081,575 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12316,797,783 - 16,907,604 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02316,911,058 - 17,020,946 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02316,975,473 - 17,085,305 (+)NCBIUU_Cfam_GSD_1.0
Slc4a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118185,411,916 - 185,506,897 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647318,550,484 - 18,645,628 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647318,550,489 - 18,645,470 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1313,933,711 - 14,043,058 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11313,933,552 - 14,043,108 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21315,479,010 - 15,753,996 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11571,942,498 - 72,047,781 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1571,961,350 - 72,047,617 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604145,130,894 - 45,235,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc4a7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247885,243,807 - 5,355,073 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247885,239,858 - 5,355,186 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC4A7
79 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3p26.3-22.2(chr3:52266-37148076)x3 copy number gain See cases [RCV000051097] Chr3:52266..37148076 [GRCh38]
Chr3:93949..37189567 [GRCh37]
Chr3:68949..37164571 [NCBI36]
Chr3:3p26.3-22.2		 pathogenic
GRCh38/hg38 3p26.3-24.1(chr3:52266-29248782)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051718]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051718]|See cases [RCV000051718] Chr3:52266..29248782 [GRCh38]
Chr3:93949..29290273 [GRCh37]
Chr3:68949..29265277 [NCBI36]
Chr3:3p26.3-24.1		 pathogenic
GRCh38/hg38 3p25.3-22.2(chr3:11463328-38919543)x3 copy number gain See cases [RCV000051720] Chr3:11463328..38919543 [GRCh38]
Chr3:11504802..38961034 [GRCh37]
Chr3:11479802..38936038 [NCBI36]
Chr3:3p25.3-22.2		 pathogenic
NM_003615.4(SLC4A7):c.694C>T (p.Arg232Ter) single nucleotide variant Malignant melanoma [RCV000066003] Chr3:27433973 [GRCh38]
Chr3:27475464 [GRCh37]
Chr3:27450468 [NCBI36]
Chr3:3p24.1		 not provided
NM_003615.4(SLC4A7):c.1148C>T (p.Ala383Val) single nucleotide variant Malignant melanoma [RCV000060800] Chr3:27424128 [GRCh38]
Chr3:27465619 [GRCh37]
Chr3:27440623 [NCBI36]
Chr3:3p24.1		 not provided
GRCh38/hg38 3p26.3-24.1(chr3:32241-30064208)x3 copy number gain See cases [RCV000138004] Chr3:32241..30064208 [GRCh38]
Chr3:73914..30105699 [GRCh37]
Chr3:48914..30080703 [NCBI36]
Chr3:3p26.3-24.1		 pathogenic
GRCh38/hg38 3p26.3-22.1(chr3:53308-41381521)x3 copy number gain See cases [RCV000141810] Chr3:53308..41381521 [GRCh38]
Chr3:94991..41423012 [GRCh37]
Chr3:69991..41398016 [NCBI36]
Chr3:3p26.3-22.1		 pathogenic
GRCh37/hg19 3p24.2-22.3(chr3:25045365-32691140)x1 copy number loss See cases [RCV000447472] Chr3:25045365..32691140 [GRCh37]
Chr3:3p24.2-22.3		 likely pathogenic
GRCh37/hg19 3p26.3-22.2(chr3:61891-36710181)x3 copy number gain See cases [RCV000448528] Chr3:61891..36710181 [GRCh37]
Chr3:3p26.3-22.2		 pathogenic
GRCh37/hg19 3p26.3-22.3(chr3:61891-33958201)x3 copy number gain See cases [RCV000510429] Chr3:61891..33958201 [GRCh37]
Chr3:3p26.3-22.3		 pathogenic
GRCh37/hg19 3p26.3-22.2(chr3:61891-37459464)x3 copy number gain See cases [RCV000511463] Chr3:61891..37459464 [GRCh37]
Chr3:3p26.3-22.2		 pathogenic
NM_001321103.2(SLC4A7):c.3294G>C (p.Gln1098His) single nucleotide variant not specified [RCV004281703] Chr3:27389997 [GRCh38]
Chr3:27431488 [GRCh37]
Chr3:3p24.1		 uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p24.1(chr3:27020353-27440096)x3 copy number gain not provided [RCV000682252] Chr3:27020353..27440096 [GRCh37]
Chr3:3p24.1		 likely benign
GRCh37/hg19 3p24.3-21.31(chr3:16923595-45249923)x2,3 copy number gain not provided [RCV000682249] Chr3:16923595..45249923 [GRCh37]
Chr3:3p24.3-21.31		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
NM_001321103.2(SLC4A7):c.1052A>G (p.Asp351Gly) single nucleotide variant not specified [RCV004306867] Chr3:27431396 [GRCh38]
Chr3:27472887 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.1460C>T (p.Ala487Val) single nucleotide variant not specified [RCV004282024] Chr3:27420752 [GRCh38]
Chr3:27462243 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.3472A>G (p.Lys1158Glu) single nucleotide variant not specified [RCV004302425] Chr3:27385912 [GRCh38]
Chr3:27427403 [GRCh37]
Chr3:3p24.1		 uncertain significance
GRCh37/hg19 3p24.1(chr3:26711697-27483497)x3 copy number gain not provided [RCV001005421] Chr3:26711697..27483497 [GRCh37]
Chr3:3p24.1		 uncertain significance
GRCh37/hg19 3p24.2-24.1(chr3:25901794-29520717)x1 copy number loss not provided [RCV001005420] Chr3:25901794..29520717 [GRCh37]
Chr3:3p24.2-24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.158A>G (p.Tyr53Cys) single nucleotide variant not specified [RCV004683800] Chr3:27448782 [GRCh38]
Chr3:27490273 [GRCh37]
Chr3:3p24.1		 uncertain significance
GRCh37/hg19 3p24.2-22.3(chr3:25045365-32691140) copy number loss not specified [RCV002053334] Chr3:25045365..32691140 [GRCh37]
Chr3:3p24.2-22.3		 likely pathogenic
GRCh37/hg19 3p26.3-22.2(chr3:61891-36710181) copy number gain not specified [RCV002053300] Chr3:61891..36710181 [GRCh37]
Chr3:3p26.3-22.2		 pathogenic
NC_000003.11:g.(?_16710965)_(41275270_?)del deletion not provided [RCV001958625] Chr3:16710965..41275270 [GRCh37]
Chr3:3p24.3-22.1		 pathogenic
NM_001321103.2(SLC4A7):c.980G>A (p.Arg327His) single nucleotide variant not specified [RCV004683801] Chr3:27431468 [GRCh38]
Chr3:27472959 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2909T>C (p.Met970Thr) single nucleotide variant not specified [RCV004129023] Chr3:27394726 [GRCh38]
Chr3:27436217 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2905G>A (p.Val969Ile) single nucleotide variant not specified [RCV004213040] Chr3:27394730 [GRCh38]
Chr3:27436221 [GRCh37]
Chr3:3p24.1		 likely benign
NM_001321103.2(SLC4A7):c.1889C>G (p.Ser630Cys) single nucleotide variant not specified [RCV004116826] Chr3:27409408 [GRCh38]
Chr3:27450899 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.206G>A (p.Arg69Lys) single nucleotide variant not specified [RCV004245886] Chr3:27448734 [GRCh38]
Chr3:27490225 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.604A>C (p.Asn202His) single nucleotide variant not specified [RCV004132958] Chr3:27434090 [GRCh38]
Chr3:27475581 [GRCh37]
Chr3:3p24.1		 uncertain significance
GRCh37/hg19 3p24.1(chr3:27428473-27672614)x3 copy number gain not provided [RCV002475695] Chr3:27428473..27672614 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.920G>C (p.Arg307Thr) single nucleotide variant not specified [RCV004173096] Chr3:27431528 [GRCh38]
Chr3:27473019 [GRCh37]
Chr3:3p24.1		 uncertain significance
GRCh37/hg19 3p24.1(chr3:27020354-27440096)x3 copy number gain not provided [RCV002475746] Chr3:27020354..27440096 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.800G>A (p.Arg267His) single nucleotide variant not specified [RCV004172003] Chr3:27431648 [GRCh38]
Chr3:27473139 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.910G>A (p.Ala304Thr) single nucleotide variant not specified [RCV004170482] Chr3:27431538 [GRCh38]
Chr3:27473029 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.3562C>A (p.Gln1188Lys) single nucleotide variant not specified [RCV004112044] Chr3:27383181 [GRCh38]
Chr3:27424672 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.200G>A (p.Arg67His) single nucleotide variant not specified [RCV004215578] Chr3:27448740 [GRCh38]
Chr3:27490231 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.1338C>G (p.Asp446Glu) single nucleotide variant not specified [RCV004246754] Chr3:27421708 [GRCh38]
Chr3:27463199 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2287A>G (p.Met763Val) single nucleotide variant not specified [RCV004174570] Chr3:27403173 [GRCh38]
Chr3:27444664 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2090C>G (p.Ser697Cys) single nucleotide variant not specified [RCV004115641] Chr3:27403370 [GRCh38]
Chr3:27444861 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2063A>G (p.Tyr688Cys) single nucleotide variant not specified [RCV004174490] Chr3:27404842 [GRCh38]
Chr3:27446333 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.61-4178G>A single nucleotide variant not specified [RCV004152009] Chr3:27456676 [GRCh38]
Chr3:27498167 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.3244T>C (p.Tyr1082His) single nucleotide variant not specified [RCV004149882] Chr3:27390047 [GRCh38]
Chr3:27431538 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.812G>A (p.Arg271Gln) single nucleotide variant not specified [RCV004215065] Chr3:27431636 [GRCh38]
Chr3:27473127 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.1950A>G (p.Ile650Met) single nucleotide variant not specified [RCV004153509] Chr3:27404955 [GRCh38]
Chr3:27446446 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.3410A>C (p.Lys1137Thr) single nucleotide variant not specified [RCV004154776] Chr3:27385974 [GRCh38]
Chr3:27427465 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2976T>G (p.His992Gln) single nucleotide variant not specified [RCV004110436] Chr3:27394659 [GRCh38]
Chr3:27436150 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.199C>T (p.Arg67Cys) single nucleotide variant not specified [RCV004278785] Chr3:27448741 [GRCh38]
Chr3:27490232 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.1948A>G (p.Ile650Val) single nucleotide variant not specified [RCV004264852] Chr3:27404957 [GRCh38]
Chr3:27446448 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2330G>T (p.Cys777Phe) single nucleotide variant not specified [RCV004279424] Chr3:27400861 [GRCh38]
Chr3:27442352 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.1736A>C (p.His579Pro) single nucleotide variant not specified [RCV004271845] Chr3:27411672 [GRCh38]
Chr3:27453163 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.608T>C (p.Met203Thr) single nucleotide variant not specified [RCV004360011] Chr3:27434086 [GRCh38]
Chr3:27475577 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.286T>C (p.Tyr96His) single nucleotide variant not specified [RCV004351853] Chr3:27448654 [GRCh38]
Chr3:27490145 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.1688A>G (p.Asn563Ser) single nucleotide variant not specified [RCV004344091] Chr3:27411720 [GRCh38]
Chr3:27453211 [GRCh37]
Chr3:3p24.1		 uncertain significance
GRCh37/hg19 3p26.3-24.1(chr3:310747-28297447)x3 copy number gain not provided [RCV003484107] Chr3:310747..28297447 [GRCh37]
Chr3:3p26.3-24.1		 pathogenic
GRCh37/hg19 3p24.1(chr3:27510304-27721198)x3 copy number gain not provided [RCV003484120] Chr3:27510304..27721198 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2141T>G (p.Ile714Ser) single nucleotide variant not provided [RCV003437737] Chr3:27403319 [GRCh38]
Chr3:27444810 [GRCh37]
Chr3:3p24.1		 uncertain significance
GRCh37/hg19 3p26.3-22.3(chr3:61891-33946644)x3 copy number gain not specified [RCV003986437] Chr3:61891..33946644 [GRCh37]
Chr3:3p26.3-22.3		 pathogenic
NM_001321103.2(SLC4A7):c.60G>A (p.Arg20=) single nucleotide variant SLC4A7-related disorder [RCV003961799] Chr3:27484067 [GRCh38]
Chr3:27525558 [GRCh37]
Chr3:3p24.1		 likely benign
NM_001321103.2(SLC4A7):c.2715A>G (p.Pro905=) single nucleotide variant SLC4A7-related disorder [RCV003903970] Chr3:27395104 [GRCh38]
Chr3:27436595 [GRCh37]
Chr3:3p24.1		 likely benign
NM_001321103.2(SLC4A7):c.636C>T (p.Ser212=) single nucleotide variant SLC4A7-related disorder [RCV003959787] Chr3:27434058 [GRCh38]
Chr3:27475549 [GRCh37]
Chr3:3p24.1		 likely benign
NM_001321103.2(SLC4A7):c.3698+8T>C single nucleotide variant SLC4A7-related disorder [RCV003961391] Chr3:27379241 [GRCh38]
Chr3:27420732 [GRCh37]
Chr3:3p24.1		 likely benign
NM_001321103.2(SLC4A7):c.2496T>C (p.Asp832=) single nucleotide variant SLC4A7-related disorder [RCV003966806] Chr3:27398285 [GRCh38]
Chr3:27439776 [GRCh37]
Chr3:3p24.1		 likely benign
NM_001321103.2(SLC4A7):c.1513-3T>C single nucleotide variant SLC4A7-related disorder [RCV003933844] Chr3:27418635 [GRCh38]
Chr3:27460126 [GRCh37]
Chr3:3p24.1		 likely benign
NM_001321103.2(SLC4A7):c.1093G>A (p.Glu365Lys) single nucleotide variant SLC4A7-related disorder [RCV003911707] Chr3:27431355 [GRCh38]
Chr3:27472846 [GRCh37]
Chr3:3p24.1		 likely benign
NM_001321103.2(SLC4A7):c.706C>A (p.Arg236=) single nucleotide variant SLC4A7-related disorder [RCV003923832] Chr3:27433988 [GRCh38]
Chr3:27475479 [GRCh37]
Chr3:3p24.1		 likely benign
NM_001321103.2(SLC4A7):c.1227T>C (p.Ser409=) single nucleotide variant SLC4A7-related disorder [RCV003903984] Chr3:27424076 [GRCh38]
Chr3:27465567 [GRCh37]
Chr3:3p24.1		 likely benign
NM_001321103.2(SLC4A7):c.3043C>T (p.Arg1015Cys) single nucleotide variant not specified [RCV004463986] Chr3:27394592 [GRCh38]
Chr3:27436083 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.3251G>A (p.Arg1084His) single nucleotide variant not specified [RCV004463988] Chr3:27390040 [GRCh38]
Chr3:27431531 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2644A>G (p.Thr882Ala) single nucleotide variant not specified [RCV004463983] Chr3:27397743 [GRCh38]
Chr3:27439234 [GRCh37]
Chr3:3p24.1		 likely benign
NM_001321103.2(SLC4A7):c.2795G>A (p.Cys932Tyr) single nucleotide variant not specified [RCV004463985] Chr3:27395024 [GRCh38]
Chr3:27436515 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.878A>G (p.His293Arg) single nucleotide variant not specified [RCV004463992] Chr3:27431570 [GRCh38]
Chr3:27473061 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.3334G>C (p.Ala1112Pro) single nucleotide variant not specified [RCV004463989] Chr3:27389957 [GRCh38]
Chr3:27431448 [GRCh37]
Chr3:3p24.1		 uncertain significance
GRCh37/hg19 3p26.3-22.3(chr3:60000-34461438)x3 copy number gain not provided [RCV004577500] Chr3:60000..34461438 [GRCh37]
Chr3:3p26.3-22.3		 pathogenic
NM_001321103.2(SLC4A7):c.1715C>T (p.Thr572Ile) single nucleotide variant not specified [RCV004463982] Chr3:27411693 [GRCh38]
Chr3:27453184 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.61-4178G>C single nucleotide variant not specified [RCV004463995] Chr3:27456676 [GRCh38]
Chr3:27498167 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2747A>T (p.Asp916Val) single nucleotide variant not specified [RCV004463984] Chr3:27395072 [GRCh38]
Chr3:27436563 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.3129G>A (p.Met1043Ile) single nucleotide variant not specified [RCV004463987] Chr3:27391797 [GRCh38]
Chr3:27433288 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.3502C>T (p.Arg1168Trp) single nucleotide variant not specified [RCV004463990] Chr3:27383241 [GRCh38]
Chr3:27424732 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.574C>G (p.Leu192Val) single nucleotide variant not specified [RCV004463991] Chr3:27436403 [GRCh38]
Chr3:27477894 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.911C>T (p.Ala304Val) single nucleotide variant not specified [RCV004463994] Chr3:27431537 [GRCh38]
Chr3:27473028 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.881T>A (p.Leu294His) single nucleotide variant not specified [RCV004463993] Chr3:27431567 [GRCh38]
Chr3:27473058 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.1795A>C (p.Lys599Gln) single nucleotide variant not specified [RCV004674865] Chr3:27409502 [GRCh38]
Chr3:27450993 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.3197G>A (p.Arg1066His) single nucleotide variant not specified [RCV004674866] Chr3:27390094 [GRCh38]
Chr3:27431585 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.1013G>A (p.Arg338His) single nucleotide variant not specified [RCV004674867] Chr3:27431435 [GRCh38]
Chr3:27472926 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2186C>G (p.Thr729Ser) single nucleotide variant not specified [RCV004674868] Chr3:27403274 [GRCh38]
Chr3:27444765 [GRCh37]
Chr3:3p24.1		 uncertain significance
NM_001321103.2(SLC4A7):c.2293A>G (p.Asn765Asp) single nucleotide variant not specified [RCV004674864] Chr3:27403167 [GRCh38]
Chr3:27444658 [GRCh37]
Chr3:3p24.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7487
Count of miRNA genes:1113
Interacting mature miRNAs:1388
Transcripts:ENST00000295736, ENST00000388777, ENST00000419036, ENST00000425128, ENST00000428005, ENST00000428179, ENST00000428386, ENST00000435667, ENST00000437179, ENST00000437266, ENST00000438530, ENST00000440156, ENST00000445684, ENST00000446700, ENST00000454389, ENST00000455077, ENST00000457377, ENST00000465487, ENST00000475120, ENST00000491211
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407148677GWAS797653_Hbreast carcinoma QTL GWAS797653 (human)5e-62breast carcinoma32737452227374523Human
407032448GWAS681424_Hplatelet count QTL GWAS681424 (human)1e-19platelet quantity (VT:0003179)platelet count (CMO:0000029)32743157527431576Human
406910531GWAS559507_Hdiastolic blood pressure QTL GWAS559507 (human)6e-14diastolic blood pressurediastolic blood pressure (CMO:0000005)32741571727415718Human
407045632GWAS694608_Hplatelet count QTL GWAS694608 (human)6e-22platelet quantity (VT:0003179)platelet count (CMO:0000029)32743157527431576Human
407079494GWAS728470_Hmean arterial pressure QTL GWAS728470 (human)3e-08mean arterial pressuremean arterial blood pressure (CMO:0000009)32743144527431446Human
407126723GWAS775699_Hcolor vision disorder QTL GWAS775699 (human)0.000006color vision disorder32740165527401656Human
407015429GWAS664405_HBeta blocking agent use measurement QTL GWAS664405 (human)3e-10Beta blocking agent use measurement32744167327441674Human
406887368GWAS536344_Hsmoking status measurement, diastolic blood pressure QTL GWAS536344 (human)2e-11smoking status measurement, diastolic blood pressurediastolic blood pressure (CMO:0000005)32740479427404795Human
407163405GWAS812381_Hbreast carcinoma QTL GWAS812381 (human)4e-23breast carcinoma32737452227374523Human
407107466GWAS756442_Hplatelet crit QTL GWAS756442 (human)3e-16platelet critplateletcrit (CMO:0001349)32741272427412725Human
407286927GWAS935903_Hbody height QTL GWAS935903 (human)1e-26body height (VT:0001253)body height (CMO:0000106)32745845827458459Human
407342156GWAS991132_Hplatelet count QTL GWAS991132 (human)2e-11platelet quantity (VT:0003179)platelet count (CMO:0000029)32741272427412725Human
407142920GWAS791896_Hbreast carcinoma QTL GWAS791896 (human)3e-30breast carcinoma32737452227374523Human
407222792GWAS871768_Hbreast carcinoma QTL GWAS871768 (human)5e-57breast carcinoma32737452227374523Human
406901453GWAS550429_Hbreast carcinoma QTL GWAS550429 (human)3e-45breast carcinoma32746822327468224Human
406945679GWAS594655_Hcryptic phenotype measurement QTL GWAS594655 (human)1e-09cryptic phenotype measurement32740393927403940Human
406893071GWAS542047_Hsmoking status measurement, diastolic blood pressure QTL GWAS542047 (human)1e-08smoking status measurement, diastolic blood pressurediastolic blood pressure (CMO:0000005)32740479427404795Human
407144534GWAS793510_Hbreast carcinoma QTL GWAS793510 (human)5e-22breast carcinoma32737452227374523Human
407399900GWAS1048876_Hmean arterial pressure QTL GWAS1048876 (human)1e-13mean arterial pressuremean arterial blood pressure (CMO:0000009)32742924327429244Human
406893913GWAS542889_Hsmoking status measurement, diastolic blood pressure QTL GWAS542889 (human)4e-11smoking status measurement, diastolic blood pressurediastolic blood pressure (CMO:0000005)32740479427404795Human
406998939GWAS647915_Hsmoking status measurement, systolic blood pressure QTL GWAS647915 (human)0.0000003smoking status measurement, systolic blood pressuresystolic blood pressure (CMO:0000004)32740479427404795Human
407234334GWAS883310_Hchemokine (C-C motif) ligand 27 measurement QTL GWAS883310 (human)0.000007chemokine (C-C motif) ligand 27 measurement32738421727384218Human
407128868GWAS777844_Hbreast carcinoma QTL GWAS777844 (human)0.0000006breast carcinoma32737452227374523Human
407314085GWAS963061_HJT interval QTL GWAS963061 (human)7e-09JT intervalheart electrical conduction measurement (CMO:0000230)32743144527431446Human
406894243GWAS543219_Hsmoking status measurement, diastolic blood pressure QTL GWAS543219 (human)2e-08smoking status measurement, diastolic blood pressurediastolic blood pressure (CMO:0000005)32740479427404795Human
406885667GWAS534643_Hsystolic blood pressure QTL GWAS534643 (human)6e-15systolic blood pressuresystolic blood pressure (CMO:0000004)32742924327429244Human
406890660GWAS539636_Hsmoking status measurement, systolic blood pressure QTL GWAS539636 (human)1e-10smoking status measurement, systolic blood pressuresystolic blood pressure (CMO:0000004)32740479427404795Human
406893990GWAS542966_Hsmoking status measurement, systolic blood pressure QTL GWAS542966 (human)5e-10smoking status measurement, systolic blood pressuresystolic blood pressure (CMO:0000004)32740479427404795Human
407308769GWAS957745_Hpulse pressure measurement QTL GWAS957745 (human)1e-18pulse pressure measurementpulse pressure (CMO:0000292)32744642527446426Human
407331936GWAS980912_Hsystolic blood pressure QTL GWAS980912 (human)7e-09systolic blood pressuresystolic blood pressure (CMO:0000004)32740874327408744Human
407193325GWAS842301_Hhypertension QTL GWAS842301 (human)0.0000001hypertension32738633027386331Human
407075691GWAS724667_Hsystolic blood pressure, alcohol consumption measurement QTL GWAS724667 (human)4e-08systolic blood pressure, alcohol consumption measurementethanol drink intake rate (CMO:0001407)32743955027439551Human
406893161GWAS542137_Hsmoking status measurement, systolic blood pressure QTL GWAS542137 (human)5e-08smoking status measurement, systolic blood pressuresystolic blood pressure (CMO:0000004)32740479427404795Human
407127272GWAS776248_Hbreast carcinoma QTL GWAS776248 (human)2e-08breast carcinoma32737452227374523Human
407417252GWAS1066228_Hpulse pressure measurement QTL GWAS1066228 (human)3e-11pulse pressure measurementpulse pressure (CMO:0000292)32742924327429244Human
406933105GWAS582081_Hsystolic blood pressure QTL GWAS582081 (human)5e-09systolic blood pressuresystolic blood pressure (CMO:0000004)32739150427391505Human
406910000GWAS558976_Hdiastolic blood pressure QTL GWAS558976 (human)2e-11diastolic blood pressurediastolic blood pressure (CMO:0000005)32741571727415718Human
407418360GWAS1067336_Hdiastolic blood pressure QTL GWAS1067336 (human)4e-08diastolic blood pressurediastolic blood pressure (CMO:0000005)32742924327429244Human
407347574GWAS996550_Hsystolic blood pressure QTL GWAS996550 (human)2e-10systolic blood pressuresystolic blood pressure (CMO:0000004)32744564927445650Human
406903221GWAS552197_Hdiastolic blood pressure, systolic blood pressure QTL GWAS552197 (human)2e-12diastolic blood pressure, systolic blood pressuresystolic blood pressure (CMO:0000004)32744457427444575Human
407075701GWAS724677_Hpulse pressure measurement, alcohol drinking QTL GWAS724677 (human)3e-20pulse pressure measurement, alcohol drinkingpulse pressure (CMO:0000292)32748120927481210Human
407321918GWAS970894_Hplatelet count QTL GWAS970894 (human)2e-14platelet quantity (VT:0003179)platelet count (CMO:0000029)32738425527384256Human
407313982GWAS962958_HJT interval QTL GWAS962958 (human)6e-09JT intervalheart electrical conduction measurement (CMO:0000230)32743144527431446Human
407123455GWAS772431_Hbreast carcinoma QTL GWAS772431 (human)2e-30breast carcinoma32737452227374523Human
407068734GWAS717710_Hsystolic blood pressure, alcohol drinking QTL GWAS717710 (human)6e-23systolic blood pressure, alcohol drinkingsystolic blood pressure (CMO:0000004)32748120927481210Human
2316061GLUCO194_HGlucose level QTL 194 (human)0.02Glucose level32338077449380774Human
407090237GWAS739213_Hdiastolic blood pressure QTL GWAS739213 (human)0.000005diastolic blood pressurediastolic blood pressure (CMO:0000005)32743144527431446Human

Markers in Region
WI-18242  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37327,475,321 - 27,475,470UniSTSGRCh37
Build 36327,450,325 - 27,450,474RGDNCBI36
Celera327,411,699 - 27,411,848RGD
Cytogenetic Map3p22UniSTS
HuRef327,418,432 - 27,418,581UniSTS
GeneMap99-GB4 RH Map398.13UniSTS
Whitehead-RH Map3103.0UniSTS
SHGC-76801  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37327,414,297 - 27,414,449UniSTSGRCh37
Build 36327,389,301 - 27,389,453RGDNCBI36
Celera327,350,676 - 27,350,828RGD
Cytogenetic Map3p22UniSTS
HuRef327,357,472 - 27,357,624UniSTS
TNG Radiation Hybrid Map316706.0UniSTS
GeneMap99-GB4 RH Map3116.82UniSTS
RH92347  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37327,419,499 - 27,419,661UniSTSGRCh37
Build 36327,394,503 - 27,394,665RGDNCBI36
Celera327,355,879 - 27,356,041RGD
Cytogenetic Map3p22UniSTS
HuRef327,362,675 - 27,362,837UniSTS
GeneMap99-GB4 RH Map396.78UniSTS
G59804  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37327,475,370 - 27,475,469UniSTSGRCh37
Build 36327,450,374 - 27,450,473RGDNCBI36
Celera327,411,748 - 27,411,847RGD
Cytogenetic Map3p22UniSTS
HuRef327,418,481 - 27,418,580UniSTS
TNG Radiation Hybrid Map316674.0UniSTS
G63491  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37327,443,413 - 27,443,697UniSTSGRCh37
Build 36327,418,417 - 27,418,701RGDNCBI36
Celera327,379,791 - 27,380,075RGD
Cytogenetic Map3p22UniSTS
HuRef327,386,407 - 27,386,691UniSTS
TNG Radiation Hybrid Map316693.0UniSTS
SHGC-149867  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37327,437,781 - 27,438,061UniSTSGRCh37
Build 36327,412,785 - 27,413,065RGDNCBI36
Celera327,374,159 - 27,374,439RGD
Cytogenetic Map3p22UniSTS
HuRef327,380,775 - 27,381,055UniSTS
TNG Radiation Hybrid Map316699.0UniSTS
SLC4A7_7948  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37327,416,634 - 27,417,547UniSTSGRCh37
Build 36327,391,638 - 27,392,551RGDNCBI36
Celera327,353,014 - 27,353,927RGD
HuRef327,359,810 - 27,360,723UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2252 4972 1726 2351 5 624 1950 465 2269 7303 6469 53 3733 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_032673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001258379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001258380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_135541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_135542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_135543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_135544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005265598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005265600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017007529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047449246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047449247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047449248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054348469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001740371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001740372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA569234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB012130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC099535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF047033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF053755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF089726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL389947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR627428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA756057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU499349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU934246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU934247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU934248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU934249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU934250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ178574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ178575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ178576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU354307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU354308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU354309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU354310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000295736   ⟹   ENSP00000295736
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,372,723 - 27,456,754 (-)Ensembl
Ensembl Acc Id: ENST00000419036   ⟹   ENSP00000411031
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,372,723 - 27,424,086 (-)Ensembl
Ensembl Acc Id: ENST00000425128   ⟹   ENSP00000401949
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,372,721 - 27,484,420 (-)Ensembl
Ensembl Acc Id: ENST00000428005
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,423,641 - 27,484,420 (-)Ensembl
Ensembl Acc Id: ENST00000428179   ⟹   ENSP00000388703
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,385,892 - 27,456,754 (-)Ensembl
Ensembl Acc Id: ENST00000428386   ⟹   ENSP00000416368
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,372,723 - 27,456,754 (-)Ensembl
Ensembl Acc Id: ENST00000437179   ⟹   ENSP00000394252
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,376,606 - 27,484,347 (-)Ensembl
Ensembl Acc Id: ENST00000437266   ⟹   ENSP00000409418
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,376,764 - 27,484,420 (-)Ensembl
Ensembl Acc Id: ENST00000438530   ⟹   ENSP00000407304
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,376,606 - 27,484,347 (-)Ensembl
Ensembl Acc Id: ENST00000440156   ⟹   ENSP00000414797
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,376,606 - 27,484,347 (-)Ensembl
Ensembl Acc Id: ENST00000445684   ⟹   ENSP00000406804
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,376,606 - 27,484,396 (-)Ensembl
Ensembl Acc Id: ENST00000446700   ⟹   ENSP00000406605
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,376,606 - 27,484,347 (-)Ensembl
Ensembl Acc Id: ENST00000454389   ⟹   ENSP00000390394
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,372,723 - 27,484,384 (-)Ensembl
Ensembl Acc Id: ENST00000455077   ⟹   ENSP00000407382
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,376,606 - 27,484,347 (-)Ensembl
Ensembl Acc Id: ENST00000457377   ⟹   ENSP00000408323
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,376,606 - 27,484,347 (-)Ensembl
Ensembl Acc Id: ENST00000465487
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,376,729 - 27,391,845 (-)Ensembl
Ensembl Acc Id: ENST00000475120
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,397,865 - 27,401,044 (-)Ensembl
Ensembl Acc Id: ENST00000491211
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl327,421,672 - 27,424,502 (-)Ensembl
RefSeq Acc Id: NM_001258379   ⟹   NP_001245308
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
GRCh37327,414,212 - 27,525,911 (-)NCBI
HuRef327,357,387 - 27,468,725 (-)NCBI
CHM1_1327,364,200 - 27,475,895 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001258380   ⟹   NP_001245309
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,456,778 (-)NCBI
GRCh37327,414,212 - 27,525,911 (-)NCBI
HuRef327,357,387 - 27,468,725 (-)NCBI
CHM1_1327,364,200 - 27,448,234 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,458,880 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001321103   ⟹   NP_001308032
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
CHM1_1327,364,200 - 27,475,895 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001321104   ⟹   NP_001308033
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
CHM1_1327,364,200 - 27,475,895 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001321105   ⟹   NP_001308034
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
CHM1_1327,364,200 - 27,475,895 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001321106   ⟹   NP_001308035
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
CHM1_1327,364,200 - 27,475,895 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001321107   ⟹   NP_001308036
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
CHM1_1327,364,200 - 27,475,895 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001321108   ⟹   NP_001308037
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
CHM1_1327,364,200 - 27,475,895 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
Sequence:
RefSeq Acc Id: NM_003615   ⟹   NP_003606
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,456,778 (-)NCBI
GRCh37327,414,212 - 27,525,911 (-)NCBI
Build 36327,389,218 - 27,473,249 (-)NCBI Archive
HuRef327,357,387 - 27,468,725 (-)NCBI
CHM1_1327,364,200 - 27,448,234 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,458,880 (-)NCBI
Sequence:
RefSeq Acc Id: NR_135541
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
CHM1_1327,364,200 - 27,475,895 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
Sequence:
RefSeq Acc Id: NR_135542
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
CHM1_1327,364,200 - 27,475,895 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
Sequence:
RefSeq Acc Id: NR_135543
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
CHM1_1327,364,200 - 27,475,895 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
Sequence:
RefSeq Acc Id: NR_135544
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
CHM1_1327,364,200 - 27,475,895 (-)NCBI
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005265598   ⟹   XP_005265655
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,456,778 (-)NCBI
GRCh37327,414,212 - 27,525,911 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005265600   ⟹   XP_005265657
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,456,778 (-)NCBI
GRCh37327,414,212 - 27,525,911 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713421   ⟹   XP_006713484
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011534256   ⟹   XP_011532558
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,456,778 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011534258   ⟹   XP_011532560
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011534261   ⟹   XP_011532563
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,456,778 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011534263   ⟹   XP_011532565
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011534265   ⟹   XP_011532567
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017007527   ⟹   XP_016863016
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017007528   ⟹   XP_016863017
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,431,400 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017007529   ⟹   XP_016863018
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,434,039 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047449246   ⟹   XP_047305202
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
RefSeq Acc Id: XM_047449247   ⟹   XP_047305203
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,372,723 - 27,484,384 (-)NCBI
RefSeq Acc Id: XM_047449248   ⟹   XP_047305204
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,404,830 - 27,484,384 (-)NCBI
RefSeq Acc Id: XM_054348456   ⟹   XP_054204431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
RefSeq Acc Id: XM_054348457   ⟹   XP_054204432
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,458,880 (-)NCBI
RefSeq Acc Id: XM_054348458   ⟹   XP_054204433
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
RefSeq Acc Id: XM_054348459   ⟹   XP_054204434
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
RefSeq Acc Id: XM_054348460   ⟹   XP_054204435
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,458,880 (-)NCBI
RefSeq Acc Id: XM_054348461   ⟹   XP_054204436
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
RefSeq Acc Id: XM_054348462   ⟹   XP_054204437
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,458,880 (-)NCBI
RefSeq Acc Id: XM_054348463   ⟹   XP_054204438
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
RefSeq Acc Id: XM_054348464   ⟹   XP_054204439
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
RefSeq Acc Id: XM_054348465   ⟹   XP_054204440
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,458,880 (-)NCBI
RefSeq Acc Id: XM_054348466   ⟹   XP_054204441
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,486,481 (-)NCBI
RefSeq Acc Id: XM_054348467   ⟹   XP_054204442
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,433,530 (-)NCBI
RefSeq Acc Id: XM_054348468   ⟹   XP_054204443
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,374,872 - 27,436,169 (-)NCBI
RefSeq Acc Id: XM_054348469   ⟹   XP_054204444
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0327,406,970 - 27,486,481 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001245308 (Get FASTA)   NCBI Sequence Viewer  
  NP_001245309 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308032 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308033 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308034 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308035 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308036 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308037 (Get FASTA)   NCBI Sequence Viewer  
  NP_003606 (Get FASTA)   NCBI Sequence Viewer  
  XP_005265655 (Get FASTA)   NCBI Sequence Viewer  
  XP_005265657 (Get FASTA)   NCBI Sequence Viewer  
  XP_006713484 (Get FASTA)   NCBI Sequence Viewer  
  XP_011532558 (Get FASTA)   NCBI Sequence Viewer  
  XP_011532560 (Get FASTA)   NCBI Sequence Viewer  
  XP_011532563 (Get FASTA)   NCBI Sequence Viewer  
  XP_011532565 (Get FASTA)   NCBI Sequence Viewer  
  XP_011532567 (Get FASTA)   NCBI Sequence Viewer  
  XP_016863016 (Get FASTA)   NCBI Sequence Viewer  
  XP_016863017 (Get FASTA)   NCBI Sequence Viewer  
  XP_016863018 (Get FASTA)   NCBI Sequence Viewer  
  XP_047305202 (Get FASTA)   NCBI Sequence Viewer  
  XP_047305203 (Get FASTA)   NCBI Sequence Viewer  
  XP_047305204 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204431 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204432 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204433 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204434 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204435 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204436 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204437 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204438 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204439 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204440 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204441 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204442 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204443 (Get FASTA)   NCBI Sequence Viewer  
  XP_054204444 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD38322 (Get FASTA)   NCBI Sequence Viewer  
  AAF21720 (Get FASTA)   NCBI Sequence Viewer  
  AAG16773 (Get FASTA)   NCBI Sequence Viewer  
  ACB47400 (Get FASTA)   NCBI Sequence Viewer  
  ACH61958 (Get FASTA)   NCBI Sequence Viewer  
  ACH61959 (Get FASTA)   NCBI Sequence Viewer  
  ACH61960 (Get FASTA)   NCBI Sequence Viewer  
  ACH61961 (Get FASTA)   NCBI Sequence Viewer  
  ACH61962 (Get FASTA)   NCBI Sequence Viewer  
  ACI24740 (Get FASTA)   NCBI Sequence Viewer  
  ACI24741 (Get FASTA)   NCBI Sequence Viewer  
  ACI24742 (Get FASTA)   NCBI Sequence Viewer  
  ADC32649 (Get FASTA)   NCBI Sequence Viewer  
  ADC32650 (Get FASTA)   NCBI Sequence Viewer  
  ADC32651 (Get FASTA)   NCBI Sequence Viewer  
  ADC32652 (Get FASTA)   NCBI Sequence Viewer  
  BAA25898 (Get FASTA)   NCBI Sequence Viewer  
  CAH10515 (Get FASTA)   NCBI Sequence Viewer  
  EAW64381 (Get FASTA)   NCBI Sequence Viewer  
  EAW64382 (Get FASTA)   NCBI Sequence Viewer  
  EAW64383 (Get FASTA)   NCBI Sequence Viewer  
  EAW64384 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000295736
  ENSP00000295736.5
  ENSP00000388703.1
  ENSP00000390394
  ENSP00000390394.1
  ENSP00000394252
  ENSP00000394252.1
  ENSP00000406605
  ENSP00000406605.1
  ENSP00000406804
  ENSP00000406804.1
  ENSP00000407304.1
  ENSP00000407382
  ENSP00000407382.1
  ENSP00000408323.1
  ENSP00000409418
  ENSP00000409418.1
  ENSP00000411031
  ENSP00000411031.1
  ENSP00000414797
  ENSP00000414797.1
  ENSP00000416368
  ENSP00000416368.1
GenBank Protein Q9Y6M7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_003606   ⟸   NM_003615
- Peptide Label: isoform a
- UniProtKB: Q9HC88 (UniProtKB/Swiss-Prot),   Q6AHZ9 (UniProtKB/Swiss-Prot),   O60350 (UniProtKB/Swiss-Prot),   D3K175 (UniProtKB/Swiss-Prot),   D3K174 (UniProtKB/Swiss-Prot),   C9JST9 (UniProtKB/Swiss-Prot),   B6DY53 (UniProtKB/Swiss-Prot),   B6DY52 (UniProtKB/Swiss-Prot),   B5M453 (UniProtKB/Swiss-Prot),   B5M452 (UniProtKB/Swiss-Prot),   B5M451 (UniProtKB/Swiss-Prot),   B5M449 (UniProtKB/Swiss-Prot),   B2CI53 (UniProtKB/Swiss-Prot),   A6NIA8 (UniProtKB/Swiss-Prot),   Q9UIB9 (UniProtKB/Swiss-Prot),   Q9Y6M7 (UniProtKB/Swiss-Prot),   B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001245308   ⟸   NM_001258379
- Peptide Label: isoform b
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001245309   ⟸   NM_001258380
- Peptide Label: isoform c
- UniProtKB: C9JRP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005265657   ⟸   XM_005265600
- Peptide Label: isoform X10
- UniProtKB: C9JRP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005265655   ⟸   XM_005265598
- Peptide Label: isoform X7
- UniProtKB: C9JRP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006713484   ⟸   XM_006713421
- Peptide Label: isoform X1
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011532565   ⟸   XM_011534263
- Peptide Label: isoform X8
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011532567   ⟸   XM_011534265
- Peptide Label: isoform X11
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011532560   ⟸   XM_011534258
- Peptide Label: isoform X4
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011532563   ⟸   XM_011534261
- Peptide Label: isoform X5
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011532558   ⟸   XM_011534256
- Peptide Label: isoform X2
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001308035   ⟸   NM_001321106
- Peptide Label: isoform g
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001308036   ⟸   NM_001321107
- Peptide Label: isoform h
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001308034   ⟸   NM_001321105
- Peptide Label: isoform f
- UniProtKB: B5M450 (UniProtKB/TrEMBL),   E9PFN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001308033   ⟸   NM_001321104
- Peptide Label: isoform e
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001308037   ⟸   NM_001321108
- Peptide Label: isoform i
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001308032   ⟸   NM_001321103
- Peptide Label: isoform d
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016863018   ⟸   XM_017007529
- Peptide Label: isoform X12
- UniProtKB: H7C3C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016863017   ⟸   XM_017007528
- Peptide Label: isoform X12
- UniProtKB: H7C3C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016863016   ⟸   XM_017007527
- Peptide Label: isoform X9
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000407304   ⟸   ENST00000438530
Ensembl Acc Id: ENSP00000401949   ⟸   ENST00000425128
Ensembl Acc Id: ENSP00000295736   ⟸   ENST00000295736
Ensembl Acc Id: ENSP00000388703   ⟸   ENST00000428179
Ensembl Acc Id: ENSP00000416368   ⟸   ENST00000428386
Ensembl Acc Id: ENSP00000390394   ⟸   ENST00000454389
Ensembl Acc Id: ENSP00000414797   ⟸   ENST00000440156
Ensembl Acc Id: ENSP00000407382   ⟸   ENST00000455077
Ensembl Acc Id: ENSP00000408323   ⟸   ENST00000457377
Ensembl Acc Id: ENSP00000411031   ⟸   ENST00000419036
Ensembl Acc Id: ENSP00000406804   ⟸   ENST00000445684
Ensembl Acc Id: ENSP00000406605   ⟸   ENST00000446700
Ensembl Acc Id: ENSP00000394252   ⟸   ENST00000437179
Ensembl Acc Id: ENSP00000409418   ⟸   ENST00000437266
RefSeq Acc Id: XP_047305202   ⟸   XM_047449246
- Peptide Label: isoform X3
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047305203   ⟸   XM_047449247
- Peptide Label: isoform X6
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047305204   ⟸   XM_047449248
- Peptide Label: isoform X13
RefSeq Acc Id: XP_054204439   ⟸   XM_054348464
- Peptide Label: isoform X9
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204433   ⟸   XM_054348458
- Peptide Label: isoform X3
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204431   ⟸   XM_054348456
- Peptide Label: isoform X1
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204438   ⟸   XM_054348463
- Peptide Label: isoform X8
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204441   ⟸   XM_054348466
- Peptide Label: isoform X11
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204434   ⟸   XM_054348459
- Peptide Label: isoform X4
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204436   ⟸   XM_054348461
- Peptide Label: isoform X6
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204440   ⟸   XM_054348465
- Peptide Label: isoform X10
- UniProtKB: C9JRP1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204435   ⟸   XM_054348460
- Peptide Label: isoform X5
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204437   ⟸   XM_054348462
- Peptide Label: isoform X7
- UniProtKB: C9JRP1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204432   ⟸   XM_054348457
- Peptide Label: isoform X2
- UniProtKB: B5M450 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204443   ⟸   XM_054348468
- Peptide Label: isoform X12
- UniProtKB: H7C3C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204442   ⟸   XM_054348467
- Peptide Label: isoform X12
- UniProtKB: H7C3C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054204444   ⟸   XM_054348469
- Peptide Label: isoform X13
Protein Domains
Band 3 cytoplasmic   Bicarbonate transporter-like transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y6M7-F1-model_v2 AlphaFold Q9Y6M7 1-1214 view protein structure

Promoters
RGD ID:6863884
Promoter ID:EPDNEW_H5083
Type:initiation region
Name:SLC4A7_2
Description:solute carrier family 4 member 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H5084  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,456,751 - 27,456,811EPDNEW
RGD ID:6863838
Promoter ID:EPDNEW_H5084
Type:initiation region
Name:SLC4A7_1
Description:solute carrier family 4 member 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H5083  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38327,484,384 - 27,484,444EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:11033 AgrOrtholog
COSMIC SLC4A7 COSMIC
Ensembl Genes ENSG00000033867 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000295736 ENTREZGENE
  ENST00000295736.9 UniProtKB/Swiss-Prot
  ENST00000419036 ENTREZGENE
  ENST00000419036.5 UniProtKB/TrEMBL
  ENST00000428179.1 UniProtKB/TrEMBL
  ENST00000428386 ENTREZGENE
  ENST00000428386.5 UniProtKB/Swiss-Prot
  ENST00000437179 ENTREZGENE
  ENST00000437179.5 UniProtKB/Swiss-Prot
  ENST00000437266 ENTREZGENE
  ENST00000437266.5 UniProtKB/Swiss-Prot
  ENST00000438530.5 UniProtKB/Swiss-Prot
  ENST00000440156 ENTREZGENE
  ENST00000440156.5 UniProtKB/Swiss-Prot
  ENST00000445684 ENTREZGENE
  ENST00000445684.5 UniProtKB/TrEMBL
  ENST00000446700 ENTREZGENE
  ENST00000446700.5 UniProtKB/Swiss-Prot
  ENST00000454389 ENTREZGENE
  ENST00000454389.6 UniProtKB/Swiss-Prot
  ENST00000455077 ENTREZGENE
  ENST00000455077.5 UniProtKB/Swiss-Prot
  ENST00000457377.5 UniProtKB/Swiss-Prot
Gene3D-CATH Helical hairpin bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000033867 GTEx
HGNC ID HGNC:11033 ENTREZGENE
Human Proteome Map SLC4A7 Human Proteome Map
InterPro Band3_cytoplasmic_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/HCO3_transpt UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:9497 UniProtKB/Swiss-Prot
NCBI Gene 9497 ENTREZGENE
OMIM 603353 OMIM
PANTHER PTHR11453 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM BICARBONATE COTRANSPORTER 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Band_3_cyto UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA35899 PharmGKB
PRINTS HCO3TRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAHCO3TRSPRT UniProtKB/TrEMBL
Superfamily-SCOP SSF55804 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6NIA8 ENTREZGENE
  B2CI53 ENTREZGENE
  B5M449 ENTREZGENE
  B5M450 ENTREZGENE, UniProtKB/TrEMBL
  B5M451 ENTREZGENE
  B5M452 ENTREZGENE
  B5M453 ENTREZGENE
  B6DY52 ENTREZGENE
  B6DY53 ENTREZGENE
  C9JRP1 ENTREZGENE, UniProtKB/TrEMBL
  C9JST9 ENTREZGENE
  D3K174 ENTREZGENE
  D3K175 ENTREZGENE
  E9PFN4 ENTREZGENE, UniProtKB/TrEMBL
  H7C3C4 ENTREZGENE, UniProtKB/TrEMBL
  O60350 ENTREZGENE
  Q6AHZ9 ENTREZGENE
  Q9HC88 ENTREZGENE
  Q9UIB9 ENTREZGENE
  Q9Y6M7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A6NIA8 UniProtKB/Swiss-Prot
  B2CI53 UniProtKB/Swiss-Prot
  B5M449 UniProtKB/Swiss-Prot
  B5M451 UniProtKB/Swiss-Prot
  B5M452 UniProtKB/Swiss-Prot
  B5M453 UniProtKB/Swiss-Prot
  B6DY52 UniProtKB/Swiss-Prot
  B6DY53 UniProtKB/Swiss-Prot
  C9JST9 UniProtKB/Swiss-Prot
  D3K174 UniProtKB/Swiss-Prot
  D3K175 UniProtKB/Swiss-Prot
  O60350 UniProtKB/Swiss-Prot
  Q6AHZ9 UniProtKB/Swiss-Prot
  Q9HC88 UniProtKB/Swiss-Prot
  Q9UIB9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-23 SLC4A7  solute carrier family 4 member 7  SLC4A7  solute carrier family 4, sodium bicarbonate cotransporter, member 7  Symbol and/or name change 5135510 APPROVED