Col1a2 (collagen, type I, alpha 2) - Rat Genome Database

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Gene: Col1a2 (collagen, type I, alpha 2) Mus musculus
Analyze
Symbol: Col1a2
Name: collagen, type I, alpha 2
RGD ID: 730985
MGI Page MGI
Description: Enables SMAD binding activity. Acts upstream of or within several processes, including bone mineralization; extracellular matrix assembly; and protein heterotrimerization. Located in collagen-containing extracellular matrix and extracellular space. Part of collagen type I trimer. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; genitourinary system; and limb. Used to study osteogenesis imperfecta and osteogenesis imperfecta type 3. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome (multiple); heart valve disease; intracranial aneurysm; osteogenesis imperfecta (multiple); and osteoporosis. Orthologous to human COL1A2 (collagen type I alpha 2 chain).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AA960264; AI325291; alpha-2 type I collagen; Co; Col; Col1; Col1a-2; Cola-2; Cola2; collagen alpha-2(I) chain; collagen COL1A2; oim; osteogenesis imperfecta; procollagen, type I, alpha 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,505,618 - 4,541,543 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,504,814 - 4,541,544 (+)EnsemblGRCm39 Ensembl
GRCm3864,505,618 - 4,541,543 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,504,814 - 4,541,544 (+)EnsemblGRCm38mm10GRCm38
MGSCv3764,455,697 - 4,491,543 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3664,455,761 - 4,490,730 (+)NCBIMGSCv36mm8
Celera64,648,226 - 4,684,066 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
(R)-camphor  (EXP)
(S)-nicotine  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
1-octadec-9-enoylglycero-3-phosphate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
1H-[1,2,4]oxadiazolo[4,3-a]quinoxalin-1-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-butoxyethanol  (EXP)
2-nitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-methyladenine  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
4-tert-Octylphenol  (ISO)
5'-S-methyl-5'-thioadenosine  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
9-cis-retinoic acid  (ISO)
acetaldehyde  (EXP,ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
adenine  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
aldosterone  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (ISO)
aluminium oxide  (ISO)
AM-251  (ISO)
amlodipine  (ISO)
amphetamine  (ISO)
amphibole asbestos  (EXP,ISO)
andrographolide  (EXP,ISO)
apocynin  (ISO)
Archazolid B  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP)
arsenous acid  (ISO)
Atractylodin  (ISO)
baicalein  (ISO)
baicalin  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bleomycin A2  (EXP,ISO)
boric acid  (EXP)
boron nitride  (ISO)
bosentan  (EXP)
bromochloroacetic acid  (ISO)
buspirone  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
Calphostin C  (EXP,ISO)
camphor  (EXP)
candesartan  (EXP)
cannabidiol  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chenodeoxycholic acid  (EXP)
chlordecone  (EXP)
choline  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (EXP)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
curcumin  (EXP)
cyclosporin A  (EXP,ISO)
cytarabine  (ISO)
cytochalasin D  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibromoacetic acid  (ISO)
Didecyldimethylammonium  (EXP)
diethylstilbestrol  (EXP,ISO)
dimethyl sulfoxide  (ISO)
dimethylarsinic acid  (ISO)
Diosbulbin B  (EXP)
dioxygen  (EXP,ISO)
diquat  (EXP)
disulfiram  (ISO)
diuron  (ISO)
divanadium pentaoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
emodin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
erastin  (ISO)
ethanol  (EXP,ISO)
Ethoxyacetic acid  (EXP)
ferulic acid  (EXP)
flavonoids  (ISO)
flusilazole  (EXP)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
furan  (ISO)
gamma-aminobutyric acid  (ISO)
gamma-Oryzanol (TN)  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glucose  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
hexaconazole  (EXP)
hydroxyurea  (EXP)
icariside II  (ISO)
Icaritin  (ISO)
inulin  (EXP)
ivermectin  (ISO)
L-arginine  (ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
L-methionine  (EXP)
lipopolysaccharide  (ISO)
lipoxin A4  (EXP)
lithium chloride  (EXP)
LY-2157299  (ISO)
LY294002  (ISO)
magnesium atom  (EXP,ISO)
malathion  (ISO)
malonaldehyde  (ISO)
maraviroc  (EXP)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
mifepristone  (ISO)
Muraglitazar  (ISO)
N-acetyl-1,4-benzoquinone imine  (ISO)
N-acetyl-L-cysteine  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
naphthalene  (EXP)
nefazodone  (ISO)
nickel atom  (EXP)
nickel dichloride  (EXP)
nickel subsulfide  (ISO)
nicotinamide  (ISO)
nicotine  (EXP,ISO)
nimesulide  (ISO)
nitric oxide  (ISO)
nitroprusside  (ISO)
okadaic acid  (EXP)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
p-tert-Amylphenol  (ISO)
Pachymic acid  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentane-2,3-dione  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
perindopril  (ISO)
Phenelzine  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
phenytoin  (EXP,ISO)
PhIP  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
potassium dichromate  (EXP,ISO)
progesterone  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quartz  (EXP)
quercetin  (ISO)
raloxifene  (EXP)
resveratrol  (EXP,ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
S-adenosyl-L-homocysteine  (ISO)
S-adenosyl-L-methioninate  (EXP,ISO)
S-adenosyl-L-methionine  (EXP,ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
salvianolic acid B  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
serpentine asbestos  (EXP)
silicon dioxide  (EXP,ISO)
sirolimus  (ISO)
sodium arsenate  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium atom  (EXP)
sodium dichromate  (ISO)
sodium hydroxide  (ISO)
sotorasib  (ISO)
sulindac  (EXP)
sunitinib  (ISO)
T-2 toxin  (EXP)
tacrolimus hydrate  (EXP)
teprenone  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
tetrathiomolybdate(2-)  (ISO)
thalidomide  (ISO)
thioacetamide  (EXP,ISO)
titanium dioxide  (EXP)
toluene  (ISO)
topotecan  (ISO)
trametinib  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (EXP,ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
wortmannin  (ISO)
Y-27632  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Changes in expression of the albumin, fibronectin and type I procollagen genes in CCl4-induced liver fibrosis: effect of pyridoxol L,2-pyrrolidon-5 carboxylate. Arosio B, etal., Pharmacol Toxicol. 1993 Dec;73(6):301-4.
2. Defective pro alpha 2(I) collagen synthesis in a recessive mutation in mice: a model of human osteogenesis imperfecta. Chipman SD, etal., Proc Natl Acad Sci U S A. 1993 Mar 1;90(5):1701-5.
3. TGF-beta1 and TNF-alpha are involved in the transcription of type I collagen alpha2 gene in soleus muscle atrophied by mechanical unloading. Hirose T, etal., J Appl Physiol. 2008 Jan;104(1):170-7. Epub 2007 Oct 4.
4. Upregulation of collagen type I gene expression in the ventricular myocardium of thyroidectomized male and female rats. Klein LE, etal., J Mol Cell Cardiol. 1996 Jan;28(1):33-42.
5. Mutational spectrum of type I collagen genes in Korean patients with osteogenesis imperfecta. Lee KS, etal., Hum Mutat. 2006 Jun;27(6):599.
6. Integrative urinary peptidomics in renal transplantation identifies biomarkers for acute rejection. Ling XB, etal., J Am Soc Nephrol. 2010 Apr;21(4):646-53. doi: 10.1681/ASN.2009080876. Epub 2010 Feb 11.
7. Total absence of the alpha2(I) chain of collagen type I causes a rare form of Ehlers-Danlos syndrome with hypermobility and propensity to cardiac valvular problems. Malfait F, etal., J Med Genet. 2006 Jul;43(7):e36.
8. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
9. MGDs mouse GO annotations MGD data from the GO Consortium
10. MGD IEA MGD IEA
11. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
12. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
13. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
14. Mouse MP Annotation Import Pipeline RGD automated import pipeline
15. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Rare autosomal recessive cardiac valvular form of Ehlers-Danlos syndrome results from mutations in the COL1A2 gene that activate the nonsense-mediated RNA decay pathway. Schwarze U, etal., Am J Hum Genet. 2004 May;74(5):917-30. Epub 2004 Apr 9.
18. Involvement of renal corpuscle microRNA expression on epithelial-to-mesenchymal transition in maternal low protein diet in adult programmed rats. Sene Lde B, etal., PLoS One. 2013 Aug 19;8(8):e71310. doi: 10.1371/journal.pone.0071310. eCollection 2013.
19. Clinical variability of osteogenesis imperfecta linked to COL1A2 and associated with a structural defect in the type I collagen molecule. Superti-Furga A, etal., J Med Genet 1989 Jun;26(6):358-62.
20. Differential regulation of TGF-beta signal in hepatic stellate cells between acute and chronic rat liver injury. Tahashi Y, etal., Hepatology. 2002 Jan;35(1):49-61.
21. A sensitive short-term evaluation of antifibrotic effects using newly established type I collagen reporter transgenic rats. Terashima H, etal., Am J Physiol Renal Physiol. 2010 Oct;299(4):F792-801. Epub 2010 Jul 21.
22. Mutation characteristics in type I collagen genes in Chinese patients with osteogenesis imperfecta. Yang Z, etal., Genet Mol Res. 2011 Feb 8;10(1):177-85. doi: 10.4238/vol10-1gmr984.
23. Collagen type I alpha2 (COL1A2) is the susceptible gene for intracranial aneurysms. Yoneyama T, etal., Stroke. 2004 Feb;35(2):443-8. Epub 2004 Jan 22.
24. In situ hybridization analysis of rat lung alpha 1(I) and alpha 2(I) collagen gene expression in pulmonary fibrosis induced by endotracheal bleomycin injection. Zhang K, etal., Lab Invest. 1994 Feb;70(2):192-202.
25. Integrated Analysis of Multiple Microarray Studies to Identify Core Gene-Expression Signatures Involved in Tubulointerstitial Injury in Diabetic Nephropathy. Zhou H, etal., Biomed Res Int. 2022 May 10;2022:9554658. doi: 10.1155/2022/9554658. eCollection 2022.
Additional References at PubMed
PMID:1297453   PMID:1385049   PMID:1505972   PMID:1659665   PMID:1684952   PMID:1686014   PMID:1748823   PMID:1879336   PMID:1916105   PMID:2776477   PMID:2781418   PMID:2981217  
PMID:3039494   PMID:3456166   PMID:6203894   PMID:6857446   PMID:7598807   PMID:7629088   PMID:7767012   PMID:7825727   PMID:7832805   PMID:7873877   PMID:7905852   PMID:7906968  
PMID:8020944   PMID:8061924   PMID:8096378   PMID:8097422   PMID:8294106   PMID:8305476   PMID:8328969   PMID:8348960   PMID:8428926   PMID:8567960   PMID:8661009   PMID:8686743  
PMID:8774909   PMID:8785585   PMID:8794872   PMID:8824813   PMID:8862795   PMID:8889548   PMID:8900172   PMID:8968022   PMID:8984825   PMID:9030551   PMID:9084664   PMID:9202055  
PMID:9213002   PMID:9236128   PMID:9382709   PMID:9415455   PMID:9437052   PMID:9535558   PMID:9565071   PMID:9600738   PMID:9826522   PMID:9832566   PMID:9880236   PMID:9880238  
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PMID:12054477   PMID:12109999   PMID:12192060   PMID:12206762   PMID:12466851   PMID:12477932   PMID:12524684   PMID:12592609   PMID:12840045   PMID:12874293   PMID:12875845   PMID:12904583  
PMID:12952198   PMID:14499643   PMID:14559231   PMID:14617570   PMID:14627958   PMID:14722113   PMID:14758483   PMID:14980515   PMID:15062855   PMID:15121863   PMID:15149860   PMID:15162503  
PMID:15226419   PMID:15247294   PMID:15456762   PMID:15489334   PMID:15516691   PMID:15548578   PMID:15609325   PMID:15689378   PMID:15866164   PMID:15866165   PMID:15872058   PMID:15878701  
PMID:15983038   PMID:16007336   PMID:16036621   PMID:16091368   PMID:16095890   PMID:16109715   PMID:16141072   PMID:16141073   PMID:16169709   PMID:16192629   PMID:16236725   PMID:16341224  
PMID:16356873   PMID:16368934   PMID:16537572   PMID:16537906   PMID:16602821   PMID:16611575   PMID:16702209   PMID:17014841   PMID:17029294   PMID:17135260   PMID:17141628   PMID:17194222  
PMID:17204263   PMID:17339267   PMID:17361118   PMID:17510210   PMID:17544391   PMID:17662583   PMID:17873295   PMID:17881772   PMID:17933712   PMID:17991736   PMID:18025304   PMID:18067859  
PMID:18211825   PMID:18234177   PMID:18266309   PMID:18287559   PMID:18313376   PMID:18313657   PMID:18395096   PMID:18424556   PMID:18554416   PMID:18559979   PMID:18639653   PMID:18684439  
PMID:18721810   PMID:18816857   PMID:19121369   PMID:19224984   PMID:19419310   PMID:19423573   PMID:19469869   PMID:19498055   PMID:19565505   PMID:19594296   PMID:19596008   PMID:19653325  
PMID:19714363   PMID:19853894   PMID:20025746   PMID:20053668   PMID:20080568   PMID:20147630   PMID:20193675   PMID:20236931   PMID:20348238   PMID:20417683   PMID:20430747   PMID:20440000  
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PMID:29290586   PMID:29368411   PMID:29437042   PMID:29453333   PMID:29523871   PMID:29593327   PMID:29677202   PMID:29743679   PMID:29956664   PMID:30287488   PMID:30306735   PMID:30389913  
PMID:30459452   PMID:30478225   PMID:30566624   PMID:30579604   PMID:30936179   PMID:30947518   PMID:31100714   PMID:31199918   PMID:31319059   PMID:31581792   PMID:31624071   PMID:31634485  
PMID:31648079   PMID:31805389   PMID:31835801   PMID:31844321   PMID:31859429   PMID:31943281   PMID:31961823   PMID:31988189   PMID:32002646   PMID:32040930   PMID:32151560   PMID:32169905  
PMID:32325033   PMID:32523052   PMID:33506016   PMID:33707780   PMID:33754063   PMID:33763067   PMID:33811421   PMID:33875569   PMID:34128978   PMID:34162999   PMID:34189436   PMID:34205850  
PMID:34248495   PMID:34321999   PMID:34323105   PMID:34331943   PMID:34368841   PMID:34447412   PMID:34449800   PMID:34569061   PMID:34824272   PMID:34893625   PMID:34929174   PMID:34990412  
PMID:35257929   PMID:35364055   PMID:35561582   PMID:35701367   PMID:35905011   PMID:35947192   PMID:35988140   PMID:36000457   PMID:36034228   PMID:36094016   PMID:36106514   PMID:36227576  
PMID:36285717   PMID:36402779   PMID:36438502   PMID:36441651   PMID:36460641   PMID:36656123   PMID:36685938   PMID:36706168   PMID:36822490   PMID:36831000   PMID:37160119   PMID:37566656  
PMID:37640003   PMID:37681905   PMID:37702066   PMID:37927786   PMID:37977416   PMID:38011284   PMID:38018454   PMID:38069332   PMID:38113115   PMID:38303699   PMID:38318368   PMID:38355793  
PMID:39040056   PMID:39221968   PMID:39237663   PMID:39336756   PMID:39392189  


Genomics

Comparative Map Data
Col1a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,505,618 - 4,541,543 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,504,814 - 4,541,544 (+)EnsemblGRCm39 Ensembl
GRCm3864,505,618 - 4,541,543 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,504,814 - 4,541,544 (+)EnsemblGRCm38mm10GRCm38
MGSCv3764,455,697 - 4,491,543 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3664,455,761 - 4,490,730 (+)NCBIMGSCv36mm8
Celera64,648,226 - 4,684,066 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
COL1A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38794,394,895 - 94,431,227 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl794,394,895 - 94,431,227 (+)EnsemblGRCh38hg38GRCh38
GRCh37794,024,207 - 94,060,539 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36793,861,809 - 93,898,480 (+)NCBINCBI36Build 36hg18NCBI36
Build 34793,668,523 - 93,705,195NCBI
Celera788,722,142 - 88,758,790 (+)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef788,631,579 - 88,668,235 (+)NCBIHuRef
CHM1_1793,953,972 - 93,990,650 (+)NCBICHM1_1
T2T-CHM13v2.0795,630,848 - 95,667,187 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2793,353,052 - 93,389,700 (+)NCBI
Col1a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,518,557 - 33,553,484 (+)NCBIGRCr8
mRatBN7.2432,563,938 - 32,598,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,563,381 - 32,598,867 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx437,550,562 - 37,585,439 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,476,688 - 33,511,565 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0431,846,998 - 31,881,902 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0431,534,225 - 31,569,152 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl431,534,225 - 31,569,151 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0429,442,828 - 29,478,616 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0431,405,253 - 31,440,180 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4429,393,645 - 29,428,572 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1429,431,383 - 29,467,014 (+)NCBI
Celera427,947,892 - 27,982,658 (+)NCBICelera
Cytogenetic Map4q21NCBI
Col1a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543211,128,112 - 11,163,302 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543211,127,961 - 11,164,145 (+)NCBIChiLan1.0ChiLan1.0
COL1A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26112,232,392 - 112,268,547 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17160,497,349 - 160,533,186 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0786,344,657 - 86,381,282 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1799,935,185 - 99,971,810 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl799,935,185 - 99,971,803 (+)Ensemblpanpan1.1panPan2
COL1A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11419,883,731 - 19,919,527 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1419,883,868 - 19,919,527 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1419,443,112 - 19,478,898 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01419,699,099 - 19,734,901 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1419,699,098 - 19,734,902 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11419,850,793 - 19,886,662 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01419,585,955 - 19,621,759 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01419,843,097 - 19,878,889 (+)NCBIUU_Cfam_GSD_1.0
Col1a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511833,176,893 - 33,212,967 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365855,651,180 - 5,685,923 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365855,650,322 - 5,686,393 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL1A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl974,173,931 - 74,210,397 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1974,174,484 - 74,210,407 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2981,357,192 - 81,393,118 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COL1A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12154,602,780 - 54,639,832 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2154,602,398 - 54,632,780 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604249,682,896 - 49,719,954 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col1a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248131,174,224 - 1,209,616 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248131,174,071 - 1,209,929 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Col1a2
890 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:958
Count of miRNA genes:558
Interacting mature miRNAs:694
Transcripts:ENSMUST00000031668, ENSMUST00000124686, ENSMUST00000132029, ENSMUST00000138511, ENSMUST00000139201, ENSMUST00000141483, ENSMUST00000148864, ENSMUST00000155687
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751333Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
14746985Manh59_mmandible shape 59 (mouse)6120847193Mouse
14700782Syncq6_msynovial calcification QTL 6 (mouse)641770005219000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1301178Lith10_mlithogenic gene 10 (mouse)Not determined6121465015Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
1357503Nhdlq5_mnon-HDL QTL 5 (mouse)Not determined6121465015Mouse
10043884Bhr8_mbronchial hyperresponsiveness 8 (mouse)Not determined6121465015Mouse
10044000Mobq9_mmultigenetic obesity QTL 9 (mouse)Not determined6121465015Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse

Markers in Region
AA960264  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,539,569 - 4,539,701UniSTSGRCm38
MGSCv3764,489,569 - 4,489,701UniSTSGRCm37
Celera64,682,092 - 4,682,224UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS
Whitehead/MRC_RH629.04UniSTS
Whitehead/MRC_RH626.51UniSTS
D6Mit138  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,503,823 - 4,503,937UniSTSGRCm38
MGSCv3764,453,823 - 4,453,937UniSTSGRCm37
Celera64,645,637 - 4,645,751UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS
Whitehead Genetic62.2UniSTS
GDB:180350  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,531,917 - 4,532,765UniSTSGRCm38
MGSCv3764,481,917 - 4,482,765UniSTSGRCm37
Celera64,674,440 - 4,675,288UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS
Col1a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,538,733 - 4,539,489UniSTSGRCm38
MGSCv3764,488,733 - 4,489,489UniSTSGRCm37
Celera64,681,256 - 4,682,012UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS
cM Map60.68UniSTS
D7S2150E  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,534,654 - 4,535,483UniSTSGRCm38
MGSCv3764,484,654 - 4,485,483UniSTSGRCm37
Celera64,677,177 - 4,678,006UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS
GDB:177260  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381597,976,784 - 97,977,364UniSTSGRCm38
GRCm3864,538,631 - 4,539,563UniSTSGRCm38
MGSCv371597,807,215 - 97,807,795UniSTSGRCm37
MGSCv3764,488,631 - 4,489,563UniSTSGRCm37
Celera64,681,154 - 4,682,086UniSTS
Celera15100,101,647 - 100,102,227UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map15F1UniSTS
cM Map60.68UniSTS
cM Map1554.5UniSTS
Col1a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6A1UniSTS
Col1a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,539,537 - 4,540,539UniSTSGRCm38
MGSCv3764,489,537 - 4,490,539UniSTSGRCm37
Celera64,682,060 - 4,683,062UniSTS
Cytogenetic Map6A1UniSTS
Col1a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,505,740 - 4,505,906UniSTSGRCm38
MGSCv3764,455,740 - 4,455,906UniSTSGRCm37
Celera64,648,269 - 4,648,435UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC026891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF345994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF543573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY138414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  K01832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X58251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000031668   ⟹   ENSMUSP00000031668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,505,493 - 4,541,544 (+)Ensembl
GRCm38.p6 Ensembl64,505,493 - 4,541,544 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124686
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,535,781 - 4,536,623 (+)Ensembl
GRCm38.p6 Ensembl64,535,781 - 4,536,623 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,505,702 - 4,515,019 (+)Ensembl
GRCm38.p6 Ensembl64,505,702 - 4,515,019 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138511
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,505,702 - 4,514,529 (+)Ensembl
GRCm38.p6 Ensembl64,505,702 - 4,514,529 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141483   ⟹   ENSMUSP00000125275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,504,814 - 4,516,419 (+)Ensembl
GRCm38.p6 Ensembl64,504,814 - 4,516,419 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,520,624 - 4,529,452 (+)Ensembl
GRCm38.p6 Ensembl64,520,624 - 4,529,452 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,530,156 - 4,535,885 (+)Ensembl
GRCm38.p6 Ensembl64,530,156 - 4,535,885 (+)Ensembl
Ensembl Acc Id: ENSMUST00000203346
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,537,489 - 4,537,990 (+)Ensembl
GRCm38.p6 Ensembl64,537,489 - 4,537,990 (+)Ensembl
RefSeq Acc Id: NM_007743   ⟹   NP_031769
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,505,618 - 4,541,543 (+)NCBI
GRCm3864,505,618 - 4,541,543 (+)NCBI
MGSCv3764,455,697 - 4,491,543 (+)RGD
Celera64,648,226 - 4,684,066 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031769   ⟸   NM_007743
- Peptide Label: preproprotein
- UniProtKB: Q8CGA5 (UniProtKB/Swiss-Prot),   Q01149 (UniProtKB/Swiss-Prot),   Q3TX57 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000031668   ⟸   ENSMUST00000031668
Ensembl Acc Id: ENSMUSP00000125275   ⟸   ENSMUST00000141483
Protein Domains
Fibrillar collagen NC1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q01149-F1-model_v2 AlphaFold Q01149 1-1372 view protein structure

Promoters
RGD ID:6839114
Promoter ID:MM_KWN:45082
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:OTTMUST00000050505
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,454,571 - 4,455,071 (+)MPROMDB
RGD ID:6839112
Promoter ID:MM_KWN:45083
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050501,   OTTMUST00000050503,   UC009AVL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,455,536 - 4,456,036 (+)MPROMDB
RGD ID:6849510
Promoter ID:EP24026
Type:single initiation site
Name:MM_CA21
Description:alpha 2 type I collagen, COL1A2 or COLA2 gene.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 125; Mammalian, avian alpha-2 type I collagen
Experiment Methods:Nuclease protection; Nuclease protection; transfected or transformed cells
Regulation:fibroblasts, osteoblasts; (induced by or strongly expressed in) TGF (repressed by or weakly expressed in) b'
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3764,455,702 - 4,455,762EPD
MGSCv3664,455,702 - 4,455,762EPD
RGD ID:6839113
Promoter ID:MM_KWN:45084
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050504
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,469,626 - 4,470,757 (+)MPROMDB
RGD ID:6839116
Promoter ID:MM_KWN:45085
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050506
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,479,206 - 4,480,577 (+)MPROMDB
RGD ID:6847987
Promoter ID:MM_ACW:40407
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4
Transcripts:COL1A2.GSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,483,416 - 4,483,916 (+)MPROMDB
RGD ID:6839117
Promoter ID:MM_KWN:45086
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050507,   OTTMUST00000050508
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,484,096 - 4,485,587 (+)MPROMDB
RGD ID:6847985
Promoter ID:MM_ACW:40408
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4,   MEF_B6
Transcripts:COL1A2.ESEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,486,686 - 4,488,067 (+)MPROMDB
RGD ID:6847986
Promoter ID:MM_ACW:40409
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4,   MEF_B6
Transcripts:COL1A2.HSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,488,771 - 4,490,627 (+)MPROMDB
RGD ID:6888932
Promoter ID:EPDNEW_M7917
Type:multiple initiation site
Name:Col1a2_1
Description:Mus musculus collagen, type I, alpha 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3864,505,702 - 4,505,762EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88468 AgrOrtholog
Ensembl Genes ENSMUSG00000029661 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031668 ENTREZGENE
  ENSMUST00000031668.10 UniProtKB/Swiss-Prot
  ENSMUST00000141483.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagen_superfamily UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fib_collagen_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nematode_Cuticular_Collagen UniProtKB/TrEMBL
KEGG Report mmu:12843 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88468 ENTREZGENE
NCBI Gene 12843 ENTREZGENE
PANTHER COLLAGEN UniProtKB/TrEMBL
  COLLAGEN ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COLLAGEN ALPHA-2(I) CHAIN UniProtKB/TrEMBL
  ENDOSTATIN DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAVENGER RECEPTOR CLASS A MEMBER 3 UniProtKB/TrEMBL
Pfam COLFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB COL1A2 RGD
PhenoGen Col1a2 PhenoGen
PROSITE NC1_FIB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART COLFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CO1A2_MOUSE UniProtKB/Swiss-Prot
  E0CXI2_MOUSE UniProtKB/TrEMBL
  Q01149 ENTREZGENE
  Q3TP88_MOUSE UniProtKB/TrEMBL
  Q3TU64_MOUSE UniProtKB/TrEMBL
  Q3TUE2_MOUSE UniProtKB/TrEMBL
  Q3TX57 ENTREZGENE, UniProtKB/TrEMBL
  Q8CGA5 ENTREZGENE
  Q91VL4_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8CGA5 UniProtKB/Swiss-Prot