Zfp24 (zinc finger protein 24) - Rat Genome Database

Name: Zfp24
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Zfp24 (zinc finger protein 24) Rattus norvegicus

Analyze

Symbol:

Zfp24

Name:

zinc finger protein 24

RGD ID:

727963

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in myelination; negative regulation of DNA-templated transcription; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Orthologous to human ZNF24 (zinc finger protein 24); INTERACTS WITH 2,4-dinitrotoluene; 3,4-methylenedioxymethamphetamine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

zfp-191; Zfp191; zinc finger protein 191; Znf24

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF24 (zinc finger protein 24)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp24 (zinc finger protein 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf24 (zinc finger protein 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF24 (zinc finger protein 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF24 (zinc finger protein 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf24 (zinc finger protein 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF24 (zinc finger protein 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF24 (zinc finger protein 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf24 (zinc finger protein 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNF24 (zinc finger protein 24)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp24 (zinc finger protein 24)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	15,295,687 - 15,307,319 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	15,298,290 - 15,306,799 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	15,485,141 - 15,492,250 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	16,267,846 - 16,274,955 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	15,557,596 - 15,564,706 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	15,910,175 - 15,921,757 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	15,914,399 - 15,921,734 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	15,675,784 - 15,687,354 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	15,782,909 - 15,790,125 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	15,809,563 - 15,816,771 (-)	NCBI
Celera	18	15,248,039 - 15,255,255 (-)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (EXP,ISO)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cerium trichloride (ISO)

cyclophosphamide (EXP)

cyclosporin A (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

ethanol (ISO)

hydrogen cyanide (ISO)

hydrogen peroxide (ISO)

hypochlorous acid (ISO)

indole-3-methanol (EXP)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

methylseleninic acid (ISO)

miconazole (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

potassium cyanide (ISO)

potassium dichromate (ISO)

rac-lactic acid (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

theophylline (ISO)

thioacetamide (EXP)

tributylstannane (EXP)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

myelination (ISO,ISS)

negative regulation of DNA-templated transcription (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (ISO,ISS)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific DNA binding (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	NCBI rat LocusLink and RefSeq merged data October 15, 2003	NCBI rat LocusLink and RefSeq merged data October 15, 2003
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Information Derived from GenBank Report	RGD, Sept. 2003

Additional References at PubMed

PMID:10585455	PMID:11532988	PMID:12801647	PMID:18685786	PMID:20080941	PMID:31515488

Genomics

Comparative Map Data

Zfp24
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	15,295,687 - 15,307,319 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	15,298,290 - 15,306,799 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	15,485,141 - 15,492,250 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	16,267,846 - 16,274,955 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	15,557,596 - 15,564,706 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	15,910,175 - 15,921,757 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	15,914,399 - 15,921,734 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	15,675,784 - 15,687,354 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	15,782,909 - 15,790,125 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	15,809,563 - 15,816,771 (-)	NCBI
Celera	18	15,248,039 - 15,255,255 (-)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

ZNF24
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	35,332,227 - 35,344,420 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	35,332,227 - 35,345,482 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	32,912,191 - 32,924,384 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	31,169,957 - 31,178,405 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	31,169,956 - 31,178,403	NCBI
Celera	18	29,720,074 - 29,732,324 (-)	NCBI		Celera
Cytogenetic Map	18	q12.2	NCBI
HuRef	18	29,771,791 - 29,784,041 (-)	NCBI		HuRef
CHM1_1	18	32,839,132 - 32,851,381 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	35,523,566 - 35,535,760 (-)	NCBI		T2T-CHM13v2.0

Zfp24
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	24,142,774 - 24,155,294 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	24,142,759 - 24,153,867 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	24,009,717 - 24,020,813 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	24,009,702 - 24,020,810 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	24,170,768 - 24,179,272 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	24,155,277 - 24,163,781 (-)	NCBI		MGSCv36	mm8
Celera	18	24,502,320 - 24,510,829 (-)	NCBI		Celera
Cytogenetic Map	18	A2	NCBI
cM Map	18	12.55	NCBI

Znf24
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	22,067,261 - 22,079,216 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	22,067,261 - 22,079,216 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF24
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	18	38,414,102 - 38,430,756 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	28,551,197 - 28,563,351 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	32,139,846 - 32,152,397 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	32,144,853 - 32,152,242 (-)	Ensembl	panpan1.1		panPan2

ZNF24
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	54,691,212 - 54,702,249 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	54,691,555 - 54,697,183 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	54,117,106 - 54,127,901 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	54,662,616 - 54,673,411 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	54,662,723 - 54,670,299 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	54,345,258 - 54,372,911 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	54,368,570 - 54,379,364 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	54,661,702 - 54,689,042 (+)	NCBI		UU_Cfam_GSD_1.0

Znf24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	50,416,647 - 50,427,741 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936517	9,743,973 - 9,752,449 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936517	9,744,087 - 9,752,346 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF24
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	119,160,530 - 119,167,187 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	119,156,507 - 119,167,240 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	111,615,234 - 111,625,806 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF24
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	45,418,556 - 45,430,743 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	45,418,568 - 45,425,743 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	19,920,846 - 19,933,200 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf24
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624779	9,732,615 - 9,739,497 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624779	9,727,764 - 9,739,442 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfp24
30 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	53
Count of miRNA genes:	51
Interacting mature miRNAs:	53
Transcripts:	ENSRNOT00000022304
Prediction methods:	Microtar, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	25758124	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	25758124	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)	18	2249477	22066430	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	2249477	22066430	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	11944273	26548295	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	11944273	26548295	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	11944273	26548295	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	11944273	26548295	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	11944273	26548295	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	11944273	26548295	Rat
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944273	26548295	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	11944299	24797117	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat

Markers in Region

RH130696

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	15,299,553 - 15,299,763 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	15,914,024 - 15,914,233	NCBI	Rnor6.0
Rnor_5.0	18	15,679,633 - 15,679,842	UniSTS	Rnor5.0
RGSC_v3.4	18	15,782,468 - 15,782,677	UniSTS	RGSC3.4
Celera	18	15,247,598 - 15,247,807	UniSTS
RH 3.4 Map	18	173.4	UniSTS
Cytogenetic Map	18	p12	UniSTS

RH133099

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	15,308,334 - 15,308,554 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	15,922,804 - 15,923,023	NCBI	Rnor6.0
Rnor_5.0	18	15,688,413 - 15,688,632	UniSTS	Rnor5.0
RGSC_v3.4	18	15,791,248 - 15,791,467	UniSTS	RGSC3.4
Celera	18	15,256,378 - 15,256,597	UniSTS
RH 3.4 Map	18	172.7	UniSTS
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	40	46	30	19	30	8	10	74	35	38	11	8
Low		3	11	11		11		1			3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_182955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY336973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000022304 ⟹ ENSRNOP00000022304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	15,298,290 - 15,306,799 (-)	Ensembl
Rnor_6.0 Ensembl	18	15,914,399 - 15,921,734 (-)	Ensembl

RefSeq Acc Id:

NM_182955 ⟹ NP_892000

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	15,299,995 - 15,307,211 (-)	NCBI
Rnor_6.0	18	15,914,465 - 15,921,681 (-)	NCBI
Rnor_5.0	18	15,675,784 - 15,687,354 (-)	NCBI
RGSC_v3.4	18	15,782,909 - 15,790,125 (-)	RGD
Celera	18	15,248,039 - 15,255,255 (-)	RGD

Sequence:

show sequence

CGAGGCTGTGGCGGGTCCCGAGCCAGAGGTCAGCAGCGCGCGGGGGTAGGGTTCGAGGAGGCGG
GGGCTCAGGAGTACTTTTGAGGAAAACAGGGTATTTCTGAGGTCTGTACCTTGCCTCAGTTGCC
TTTTCTTGGAGGTATTGTAACAGGATGTCTGCCCAGTCAGTGGAAGAAGATTCAATACTTATCA
TCCCAAATCCAGATGAAGAAGAAAAAATTCTGAGAGTGAAACTAGAGGAGGATCCTGACGGTGA
AGAAGGATCGAGCATTTCCTGGAACCATCTCCCTGACCCGGAGATTTTCCGGCAGCGGTTCAGG
CAGTTTGGATACCAGGATTCACCAGGACCGCGAGAGGCGGTGAGCCAGCTCCGAGAACTGTGCC
GCCTGTGGCTCAGACCGGAGACGCACACGAAGGAGCAGATACTGGAGCTGGTGGTTTTGGAGCA
GTTTGTCGCCATCCTCCCCAGGGAGCTACAGACTTTGGTTCGAGAGCATCACCCAGAGAACGGA
GAGGAGGCAGTGACTGTTCTAGAGGACTTGGAGAGTGAACTTGATGACCCTGGACAGCCGGTTT
CTCTCCGTCGGCGGAAACGGGAAGTACTTGTAGAAGAGATAGCATCTCAAGAAGACGCTCAGGG
ATTACCGAGTTCTGAGCTTGACGCCGTAGAGAACCAGCTCAAGTGGGCATCCTGGGAACTCCAC
TCTCTGAGGCACTGTGATGATGATGCTACGGCAGAGAATGGAGCCCTGGCCCCAAAGCAGGAGA
TCGCTTCAGCGGGAGAGTCTCACGAGGTTCCTGGCACTCTCAACATAGGTGTTCCTCAGATTTT
CAAATATGGAGAAACCTGTTTTCCCAAGGGCAGGTTTGAAAGAAAGAGAAATCCTTCCAGAAAG
AAACAACACATATGTGACGAGTGTGGGAAACACTTCAGTCAGGGCTCTGCCCTTATTCTTCATC
AGAGAATCCACAGCGGGGAGAAGCCTTACGGATGTGTCGAATGTGGGAAAGCCTTCAGCAGAAG
CTCCATCCTGGTGCAGCACCAGAGAGTCCATACTGGAGAAAAACCCTACAAGTGTCTCGAATGT
GGGAAAGCCTTTAGCCAGAATTCTGGGCTCATTAACCATCAGCGAATCCACACTGGGGAGAAAC
CGTATGAATGTGTTCAGTGTGGGAAATCCTATAGTCAAAGCTCAAATCTTTTTAGACATCAGAG
AAGACACAATGCAGAAAAACTTTTAAATGTTGTGAAGGTTTAAGAAATTATGAGGAAACAATCA
GCACTCAGGTCTTTTTCTTCAGAAATGAAGACAAAATTAAAAAGTGAAGAGATATGGAAACTAT
TTTTCCCCATTGACTGAGAAAATCTACTGGGAAATAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006254464 ⟹ XP_006254526

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	15,295,687 - 15,307,319 (-)	NCBI
Rnor_6.0	18	15,910,175 - 15,921,756 (-)	NCBI
Rnor_5.0	18	15,675,784 - 15,687,354 (-)	NCBI

Sequence:

show sequence

CGGACCGGAAGCCGTGCGCGCCGGGGGCTTGTGGGAAGCGGCTGAAAGCGGCGGCGCAGCGTCT
GCCCGGGACGACGAGGCTGTGGCGGGTCCCGAGCCAGAGGAGTACTTTTGAGGAAAACAGGGTA
TTTCTGAGGTCTGTACCTTGCCTCAGTTGCCTTTTCTTGGAGGTATTGTAACAGGATGTCTGCC
CAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAAATCCAGATGAAGAAGAAAAAATTCTGA
GAGTGAAACTAGAGGAGGATCCTGACGGTGAAGAAGGATCGAGCATTTCCTGGAACCATCTCCC
TGACCCGGAGATTTTCCGGCAGCGGTTCAGGCAGTTTGGATACCAGGATTCACCAGGACCGCGA
GAGGCGGTGAGCCAGCTCCGAGAACTGTGCCGCCTGTGGCTCAGACCGGAGACGCACACGAAGG
AGCAGATACTGGAGCTGGTGGTTTTGGAGCAGTTTGTCGCCATCCTCCCCAGGGAGCTACAGAC
TTTGGTTCGAGAGCATCACCCAGAGAACGGAGAGGAGGCAGTGACTGTTCTAGAGGACTTGGAG
AGTGAACTTGATGACCCTGGACAGCCGGTTTCTCTCCGTCGGCGGAAACGGGAAGTACTTGTAG
AAGAGATAGCATCTCAAGAAGACGCTCAGGGATTACCGAGTTCTGAGCTTGACGCCGTAGAGAA
CCAGCTCAAGTGGGCATCCTGGGAACTCCACTCTCTGAGGCACTGTGATGATGATGCTACGGCA
GAGAATGGAGCCCTGGCCCCAAAGCAGGAGATCGCTTCAGCGGGAGAGTCTCACGAGGTTCCTG
GCACTCTCAACATAGGTGTTCCTCAGATTTTCAAATATGGAGAAACCTGTTTTCCCAAGGGCAG
GTTTGAAAGAAAGAGAAATCCTTCCAGAAAGAAACAACACATATGTGACGAGTGTGGGAAACAC
TTCAGTCAGGGCTCTGCCCTTATTCTTCATCAGAGAATCCACAGCGGGGAGAAGCCTTACGGAT
GTGTCGAATGTGGGAAAGCCTTCAGCAGAAGCTCCATCCTGGTGCAGCACCAGAGAGTCCATAC
TGGAGAAAAACCCTACAAGTGTCTCGAATGTGGGAAAGCCTTTAGCCAGAATTCTGGGCTCATT
AACCATCAGCGAATCCACACTGGGGAGAAACCGTATGAATGTGTTCAGTGTGGGAAATCCTATA
GTCAAAGCTCAAATCTTTTTAGACATCAGAGAAGACACAATGCAGAAAAACTTTTAAATGTTGT
GAAGGTTTAAGAAATTATGAGGAAACAATCAGCACTCAGGTCTTTTTCTTCAGAAATGAAGACA
AAATTAAAAAGTGAAGAGATATGGAAACTATTTTTCCCCATTGACTGAGAAAATCTACTGGGAA
ATAAAAAAAAAAAAATCTTCATTCACCATTATTACCTTGAAAGAAATGGTGTTATACCTGCCTA
GAAACCGAAATTTTAAATAATTCAGGTGTTAATAACCTAAATTTTCCATGTGATGTTTATATTT
TCTTTTTTTCTCCCCAAGTAATTAGATGCCTGGTTCTCTGTCCCTCCCCTTTTTCAGACAGCTA
CTTTATTTCTGTGTTGATCACTGGAGGGGTGTTCTGTGAGGGTGCACACCTTTTTGTTTTAAAG
GGCAACACAGGAATTGTAAAATCTAAAGCCCATCTTCAAGGTTTAGAACCATCCTTGAAAGCTT
AGCTTCCTTTTGTTCAGGTTGAGAAGATAACGGCCAAAGCCGCAGTCAGATAAGCCTTAAGTCT
CAGACGAGAGATGGCAGCAAAACTTCCAGGAGCGGAGGGACAACTGGGGAAGTTCCCTGGTGAA
GCATGTCTCTTAAGTACAGTCAGTCTACAGGAAACCTCCAAAGGAAAAAGTGATTTTACCTAAC
TTGTGGGAATCTTACTAACTAAAATGGTTTTCCTGTGTAAACACAGACAATTGTAGAAGTGATG
GTAAATCAAACACTAAGGAAGAATGTAGTGATATTGAAAGGCAAATGTAAAATTAAAGTAATTA
TATGTATGACATGGCTTTTAGAAAAATTCTTAACTCATTTTGCCTCATCCTAGTTAAGGACAGG
GAATTCCGTGATAGGGTGGGCAGCAATATCAGGTTTGCTATTTTTATTCCTTTGGTACAAAAGG
GTTGAACACCAGGCTAAAACAGCCATACATTTCTTATTAAACGTTTCTACTGACAGTGCACTGT
GCTGGGTACTGTAATCCTACCTAAGCAGGTAGGTATTCGCTCCACTGTAAGTCATGAGGGGTTT
CCCCATCACCATTCCCAGCCACCTCTGAGAGCGCCAGAGCTGTAGTTCTCTTGCCAGTGTGTTG
TGTTTGGAGGGAGAGCTAGCTGGTCAGCTCTTAGCGTTCTTCAGAGCTGAGCTCAAGACACACT
CTTAGTTTGAAAGTTTATGAATCTTAAAAATCCAAACATTTCTAGTAGCATTGTGGTTGTAGCT
ACACATTGAATGGACTGTACTTTAAACAACTAAGCTATTAATTACTAGTTTATTAACGGTCAGA
ATTGATTTTCTAATCTACAGTCTTAACACATTTTTTTAAAGAAGTATTAAAAGTAATACATTTT
AGTAGTAGGATTCTGTATGCCTTGGCTAAGAATCCAAGTACTGTGGTTCTACTGTTTAATGGAA
AACTCTGGAAGTTAAAGCAGTGGGTAAGAGAAGAGGTTTTGTTTGGTTTTGTTTTGTTTTGTAT
GTAAGACAGGCATTGTTACATGGAAAATTATCCATGCAAGTACAAATATTTTATAGCTCCAGTT
ATTTGGGTCCTATCTGGTGCTTCGTCAAATTTTAACGTGAAAAGTGAGGTTTTTGAGTGAACCT
GGTGAAAAGCAGTAAAAAATGCAGCACCGCTGCTGAGGTGAGGCAGAATGACGCTTGTTCATGA
TTTTCTGAGAACAATTATAAGAAATGTGCTTTATAGATGAAGATTTATTGAGGTATAAATATGT
AGTAATGCTATAATGTATTTTTAAGTTATACAAGAAAATGTAGGGACTTTTGTTTGGGTCTTTC
TCTGTGGCTGAGAGGAAACAAGTTAATGTCCAATAAAGCTGGAAACTCCTCTGCTCTAAGATAA
AGTGGCTTGAACCTGCCTTACTTATTTATTAATGCCTGGCTTCTTTCCCGGTAGGATTAAAGCC
TGCAGGGATGGCAGAACTCTTAGGCTAGGTAGGTAAAGGGTAAGTAGCCTCTGGGTGGAATGTC
AGTCTTAACAACTTTAGGGTAGATTTGTCTCGAAGGCCAAAGCTGCTTGGTGACGTGAAAGCAC
AGAAGGTAGCATTAGAGTTGGTGAACACGTGAGGTCTGTCAGCTCTGACACCGTGTTCCTGTTG
GGAAGGAAGCTCAGACAAGGCTCTGTGAGAGGGGACTGGGCTAAAACCCTGAGGGTATATAGGA
AAAGGAAGCGATGGGGTTTGTATTTAACTGACTTTGTTCAACAAATTAATTTACAGTTAGTGAT
TGCTGACATATATTTTGGGGGTGCACAGTAATGAAGTAGGCCTGTAGCAGTTGCCAAGCAGTGG
CCTAACCAGCACCTTTCTGGTTAGCAGTTCTGTTAAGGCCTGCAGACTAACTGGCCCAACAGAC
AGTTTAGTGGCTTTTAGTGATTTTGAATAATCACACCTAGTTGATGTTTGACCATTGCAGCCTG
TCTTACACCTGTGTGAGCTTAGGGGACATTTTCTCTACTGAAACAATTGCTAAGCATTGGATTG
GAATCTGTGGGAAAAACAAGACCCAAAGAATGTGTGACTTGGACATGGTAGAGCTAAAATTCCC
AAGGCTGGGTTTTTTGATTGGTTTTGATGGAATTTAAGTCCTACATCTTTTGTTTTTTTTCCAT
TTAACAAACTTGAAAAGTGGGGTTGGAGATTTAGCTCAGTGGTAGAGCGCTTACCTAGCAAGCA
CAAGGCCCTGGGTTCGGTTCCCAGCTCCGGAAAAAAAAGAAAAAAAAAAACTTGAAAAGCCATT
TGACTTTTTCACAAAGCAAAAACAAAAGATGAGCAAAGATAACAGATTTAGCAGAAATAGTGGT
AATCTGGTTTCTTATCCTTCCAAATTTAGCTCTGTACCTGTTTAAGCAAACGTCTTTTAAATTA
ATAGCTGACCTTCGAGGTTGAGTACAGCACACACCAACTATAGTGCTTTACCGTGCTTTAGTCC
TCAGCAAACCTGAGGTAGTGACGTCTCCATTGTACATCTGTGGTGAGACTCCCCACACTGATGT
GCACATTTTCATAGCTATATAGTATTCCACTGCATGAAAACACAGTCCATCTAACCAGCTCCAT
AGTGAAGGGTTAGTAGGTTCTTTATACATAATAGATATGGCTAACATCTGTAGACATACATTTA
CTACCTATGTAGTTGTGTCTAACACAAATAACTAGAAATGGATTTATTGGCTCATAAAGTACAT
ATTGGCATTGGGGGGGGGGGGGTCCACCTTGTACTAATTTTATAACTCCATTAGTAATGCCTGT
TTGCCGCACTCCTATCTGATGCTCATCCTGGAGACCCGTTCTTTTTTCCCACTTTTTTGCTGTA
CCTTTATTAGTAAGATGGGATATTTTTTGTCTGTTGGCTATTTTTATGTCCTTGTCTGGTCTTG
CCCATTTCTTTATTTCTGAAAGTATAAATTACTAAAGTTAACACCATACAAAACTTAAGATAGA
CAAGTGTCAGAGAAGAGACTGTTTTCTTCAGGGCTTCTGGTTGGTTCCACTTTTAAGTGTGCTG
TATATCCTGGTACAGTATCTACACATTTCCATGTGAATATGCAGAAACGTGAACACCTTTCAAA
TAAACAGGATTATATAGGATTTTTAAGATACCTTTGTCTTAAATATTATGGTATTTAAATTCCT
GTGAGGTGCATGGTTAGCTATTAAGATGCTCTAGTCATCAGTGTAATCTTCATCAGCTCTGAAA
AGTGTCCATTTCCCCACATAGCCTTACCTACACTTGATAGAGGAAAAGGAAACTGTCCTTACCT
GCCTTCCCTGATGAATCCTGAAGTTGGAGTTCTTTATTGGTCATTTACAATTCCCTGAGGGTTG
TTCATTCATAGCTTCTGTGCCTTTGTATTGGGTTATGTATGGGTATCTGTTCTGCACTTCTCCC
CTCATTTATGGTAACAGTATCCATATTGATTGTGGATAACCCATCCCATATGGCTTTGGTGAGC
ACGTGAGCAGGCCTGGCCTGAGCCACACAGCATCCTAACCACAGCGCTTAGAGAGTAGGCATAC
AGTGTAAAGCAGGCCAGGGAGAGTGCTCAGGAGCCGCAACCACTGGCAAAAAGGCTTTGGAGAT
GCTGGAGACCCAAGGACAATGTGAACCTGCACACTTACCATATGGAGAGAATAACTGAGGAGAA
ATTCAGGCCAGCAGGGATGGTGAGAAAACTTAAGTTCTGATATTTTCTGGGGGCCCTAGATCCA
GATGTGCCTAAAGCCTGCCCTACCTCTGGACTTTAAAGATTTTTGAGCCAATGAAGTCCCTTTC
TTGTTTAAGATAATCACATTTGGCCTCTGTCCTGATTATATATAGGGTATTTGTATTTTCTTAC
TGACTTGTAGCAAACCTTTGTAGTTTTAAAATTAGAGACTTCATGCATTATATAAGTTAATAAA
ATTAGCATGGCCTTCTA

hide sequence

RefSeq Acc Id:

XM_006254465 ⟹ XP_006254527

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	15,295,687 - 15,307,067 (-)	NCBI
Rnor_6.0	18	15,910,175 - 15,921,595 (-)	NCBI
Rnor_5.0	18	15,675,784 - 15,687,354 (-)	NCBI

Sequence:

show sequence

GCCGGCGACGCTCAGCATTCCGGGCGTGCGCATAAAAGGCCGCGGCGGCGGAAGGGCGGCGGCG
ACCTGCGGCACTTCGGGGGTCCGCAGAGCCTCCAGCGCCCGCATCCTCTCCGGCCTGCTTTCCC
CTCCCCCACGGGCCGGTTTTGTTCTATTTCGAGGCTCTAGCGGCTCGCGGAGGATTCTGGGAGA
CGCTCAAGCCGAGGGGGGATCCGGCCGTTCTCGCGCGCGACCTGCTGGGATTTGTAGTCCCGCC
GGTCCCGGGCGGAAGTGCCTGTCCTGTGTGGCGGGGTGGTTCTGGGGCTTCTGCAGCCCTTCCT
GGTGAATGCTGGGAAGAGGACGTCCGAGTTGCTGGGGCAGGCTGGGCTCAGCGCTGTGAGGCGG
GCGGTCGCTGAAGACCAGGATCCCGCCGAGTGCCGGACGGCGTTCCTCCACATCCCACGAGCTT
GGTGCAGTACAAAGAGTACTTTTGAGGAAAACAGGGTATTTCTGAGGTCTGTACCTTGCCTCAG
TTGCCTTTTCTTGGAGGTATTGTAACAGGATGTCTGCCCAGTCAGTGGAAGAAGATTCAATACT
TATCATCCCAAATCCAGATGAAGAAGAAAAAATTCTGAGAGTGAAACTAGAGGAGGATCCTGAC
GGTGAAGAAGGATCGAGCATTTCCTGGAACCATCTCCCTGACCCGGAGATTTTCCGGCAGCGGT
TCAGGCAGTTTGGATACCAGGATTCACCAGGACCGCGAGAGGCGGTGAGCCAGCTCCGAGAACT
GTGCCGCCTGTGGCTCAGACCGGAGACGCACACGAAGGAGCAGATACTGGAGCTGGTGGTTTTG
GAGCAGTTTGTCGCCATCCTCCCCAGGGAGCTACAGACTTTGGTTCGAGAGCATCACCCAGAGA
ACGGAGAGGAGGCAGTGACTGTTCTAGAGGACTTGGAGAGTGAACTTGATGACCCTGGACAGCC
GGTTTCTCTCCGTCGGCGGAAACGGGAAGTACTTGTAGAAGAGATAGCATCTCAAGAAGACGCT
CAGGGATTACCGAGTTCTGAGCTTGACGCCGTAGAGAACCAGCTCAAGTGGGCATCCTGGGAAC
TCCACTCTCTGAGGCACTGTGATGATGATGCTACGGCAGAGAATGGAGCCCTGGCCCCAAAGCA
GGAGATCGCTTCAGCGGGAGAGTCTCACGAGGTTCCTGGCACTCTCAACATAGGTGTTCCTCAG
ATTTTCAAATATGGAGAAACCTGTTTTCCCAAGGGCAGGTTTGAAAGAAAGAGAAATCCTTCCA
GAAAGAAACAACACATATGTGACGAGTGTGGGAAACACTTCAGTCAGGGCTCTGCCCTTATTCT
TCATCAGAGAATCCACAGCGGGGAGAAGCCTTACGGATGTGTCGAATGTGGGAAAGCCTTCAGC
AGAAGCTCCATCCTGGTGCAGCACCAGAGAGTCCATACTGGAGAAAAACCCTACAAGTGTCTCG
AATGTGGGAAAGCCTTTAGCCAGAATTCTGGGCTCATTAACCATCAGCGAATCCACACTGGGGA
GAAACCGTATGAATGTGTTCAGTGTGGGAAATCCTATAGTCAAAGCTCAAATCTTTTTAGACAT
CAGAGAAGACACAATGCAGAAAAACTTTTAAATGTTGTGAAGGTTTAAGAAATTATGAGGAAAC
AATCAGCACTCAGGTCTTTTTCTTCAGAAATGAAGACAAAATTAAAAAGTGAAGAGATATGGAA
ACTATTTTTCCCCATTGACTGAGAAAATCTACTGGGAAATAAAAAAAAAAAAATCTTCATTCAC
CATTATTACCTTGAAAGAAATGGTGTTATACCTGCCTAGAAACCGAAATTTTAAATAATTCAGG
TGTTAATAACCTAAATTTTCCATGTGATGTTTATATTTTCTTTTTTTCTCCCCAAGTAATTAGA
TGCCTGGTTCTCTGTCCCTCCCCTTTTTCAGACAGCTACTTTATTTCTGTGTTGATCACTGGAG
GGGTGTTCTGTGAGGGTGCACACCTTTTTGTTTTAAAGGGCAACACAGGAATTGTAAAATCTAA
AGCCCATCTTCAAGGTTTAGAACCATCCTTGAAAGCTTAGCTTCCTTTTGTTCAGGTTGAGAAG
ATAACGGCCAAAGCCGCAGTCAGATAAGCCTTAAGTCTCAGACGAGAGATGGCAGCAAAACTTC
CAGGAGCGGAGGGACAACTGGGGAAGTTCCCTGGTGAAGCATGTCTCTTAAGTACAGTCAGTCT
ACAGGAAACCTCCAAAGGAAAAAGTGATTTTACCTAACTTGTGGGAATCTTACTAACTAAAATG
GTTTTCCTGTGTAAACACAGACAATTGTAGAAGTGATGGTAAATCAAACACTAAGGAAGAATGT
AGTGATATTGAAAGGCAAATGTAAAATTAAAGTAATTATATGTATGACATGGCTTTTAGAAAAA
TTCTTAACTCATTTTGCCTCATCCTAGTTAAGGACAGGGAATTCCGTGATAGGGTGGGCAGCAA
TATCAGGTTTGCTATTTTTATTCCTTTGGTACAAAAGGGTTGAACACCAGGCTAAAACAGCCAT
ACATTTCTTATTAAACGTTTCTACTGACAGTGCACTGTGCTGGGTACTGTAATCCTACCTAAGC
AGGTAGGTATTCGCTCCACTGTAAGTCATGAGGGGTTTCCCCATCACCATTCCCAGCCACCTCT
GAGAGCGCCAGAGCTGTAGTTCTCTTGCCAGTGTGTTGTGTTTGGAGGGAGAGCTAGCTGGTCA
GCTCTTAGCGTTCTTCAGAGCTGAGCTCAAGACACACTCTTAGTTTGAAAGTTTATGAATCTTA
AAAATCCAAACATTTCTAGTAGCATTGTGGTTGTAGCTACACATTGAATGGACTGTACTTTAAA
CAACTAAGCTATTAATTACTAGTTTATTAACGGTCAGAATTGATTTTCTAATCTACAGTCTTAA
CACATTTTTTTAAAGAAGTATTAAAAGTAATACATTTTAGTAGTAGGATTCTGTATGCCTTGGC
TAAGAATCCAAGTACTGTGGTTCTACTGTTTAATGGAAAACTCTGGAAGTTAAAGCAGTGGGTA
AGAGAAGAGGTTTTGTTTGGTTTTGTTTTGTTTTGTATGTAAGACAGGCATTGTTACATGGAAA
ATTATCCATGCAAGTACAAATATTTTATAGCTCCAGTTATTTGGGTCCTATCTGGTGCTTCGTC
AAATTTTAACGTGAAAAGTGAGGTTTTTGAGTGAACCTGGTGAAAAGCAGTAAAAAATGCAGCA
CCGCTGCTGAGGTGAGGCAGAATGACGCTTGTTCATGATTTTCTGAGAACAATTATAAGAAATG
TGCTTTATAGATGAAGATTTATTGAGGTATAAATATGTAGTAATGCTATAATGTATTTTTAAGT
TATACAAGAAAATGTAGGGACTTTTGTTTGGGTCTTTCTCTGTGGCTGAGAGGAAACAAGTTAA
TGTCCAATAAAGCTGGAAACTCCTCTGCTCTAAGATAAAGTGGCTTGAACCTGCCTTACTTATT
TATTAATGCCTGGCTTCTTTCCCGGTAGGATTAAAGCCTGCAGGGATGGCAGAACTCTTAGGCT
AGGTAGGTAAAGGGTAAGTAGCCTCTGGGTGGAATGTCAGTCTTAACAACTTTAGGGTAGATTT
GTCTCGAAGGCCAAAGCTGCTTGGTGACGTGAAAGCACAGAAGGTAGCATTAGAGTTGGTGAAC
ACGTGAGGTCTGTCAGCTCTGACACCGTGTTCCTGTTGGGAAGGAAGCTCAGACAAGGCTCTGT
GAGAGGGGACTGGGCTAAAACCCTGAGGGTATATAGGAAAAGGAAGCGATGGGGTTTGTATTTA
ACTGACTTTGTTCAACAAATTAATTTACAGTTAGTGATTGCTGACATATATTTTGGGGGTGCAC
AGTAATGAAGTAGGCCTGTAGCAGTTGCCAAGCAGTGGCCTAACCAGCACCTTTCTGGTTAGCA
GTTCTGTTAAGGCCTGCAGACTAACTGGCCCAACAGACAGTTTAGTGGCTTTTAGTGATTTTGA
ATAATCACACCTAGTTGATGTTTGACCATTGCAGCCTGTCTTACACCTGTGTGAGCTTAGGGGA
CATTTTCTCTACTGAAACAATTGCTAAGCATTGGATTGGAATCTGTGGGAAAAACAAGACCCAA
AGAATGTGTGACTTGGACATGGTAGAGCTAAAATTCCCAAGGCTGGGTTTTTTGATTGGTTTTG
ATGGAATTTAAGTCCTACATCTTTTGTTTTTTTTCCATTTAACAAACTTGAAAAGTGGGGTTGG
AGATTTAGCTCAGTGGTAGAGCGCTTACCTAGCAAGCACAAGGCCCTGGGTTCGGTTCCCAGCT
CCGGAAAAAAAAGAAAAAAAAAAACTTGAAAAGCCATTTGACTTTTTCACAAAGCAAAAACAAA
AGATGAGCAAAGATAACAGATTTAGCAGAAATAGTGGTAATCTGGTTTCTTATCCTTCCAAATT
TAGCTCTGTACCTGTTTAAGCAAACGTCTTTTAAATTAATAGCTGACCTTCGAGGTTGAGTACA
GCACACACCAACTATAGTGCTTTACCGTGCTTTAGTCCTCAGCAAACCTGAGGTAGTGACGTCT
CCATTGTACATCTGTGGTGAGACTCCCCACACTGATGTGCACATTTTCATAGCTATATAGTATT
CCACTGCATGAAAACACAGTCCATCTAACCAGCTCCATAGTGAAGGGTTAGTAGGTTCTTTATA
CATAATAGATATGGCTAACATCTGTAGACATACATTTACTACCTATGTAGTTGTGTCTAACACA
AATAACTAGAAATGGATTTATTGGCTCATAAAGTACATATTGGCATTGGGGGGGGGGGGGTCCA
CCTTGTACTAATTTTATAACTCCATTAGTAATGCCTGTTTGCCGCACTCCTATCTGATGCTCAT
CCTGGAGACCCGTTCTTTTTTCCCACTTTTTTGCTGTACCTTTATTAGTAAGATGGGATATTTT
TTGTCTGTTGGCTATTTTTATGTCCTTGTCTGGTCTTGCCCATTTCTTTATTTCTGAAAGTATA
AATTACTAAAGTTAACACCATACAAAACTTAAGATAGACAAGTGTCAGAGAAGAGACTGTTTTC
TTCAGGGCTTCTGGTTGGTTCCACTTTTAAGTGTGCTGTATATCCTGGTACAGTATCTACACAT
TTCCATGTGAATATGCAGAAACGTGAACACCTTTCAAATAAACAGGATTATATAGGATTTTTAA
GATACCTTTGTCTTAAATATTATGGTATTTAAATTCCTGTGAGGTGCATGGTTAGCTATTAAGA
TGCTCTAGTCATCAGTGTAATCTTCATCAGCTCTGAAAAGTGTCCATTTCCCCACATAGCCTTA
CCTACACTTGATAGAGGAAAAGGAAACTGTCCTTACCTGCCTTCCCTGATGAATCCTGAAGTTG
GAGTTCTTTATTGGTCATTTACAATTCCCTGAGGGTTGTTCATTCATAGCTTCTGTGCCTTTGT
ATTGGGTTATGTATGGGTATCTGTTCTGCACTTCTCCCCTCATTTATGGTAACAGTATCCATAT
TGATTGTGGATAACCCATCCCATATGGCTTTGGTGAGCACGTGAGCAGGCCTGGCCTGAGCCAC
ACAGCATCCTAACCACAGCGCTTAGAGAGTAGGCATACAGTGTAAAGCAGGCCAGGGAGAGTGC
TCAGGAGCCGCAACCACTGGCAAAAAGGCTTTGGAGATGCTGGAGACCCAAGGACAATGTGAAC
CTGCACACTTACCATATGGAGAGAATAACTGAGGAGAAATTCAGGCCAGCAGGGATGGTGAGAA
AACTTAAGTTCTGATATTTTCTGGGGGCCCTAGATCCAGATGTGCCTAAAGCCTGCCCTACCTC
TGGACTTTAAAGATTTTTGAGCCAATGAAGTCCCTTTCTTGTTTAAGATAATCACATTTGGCCT
CTGTCCTGATTATATATAGGGTATTTGTATTTTCTTACTGACTTGTAGCAAACCTTTGTAGTTT
TAAAATTAGAGACTTCATGCATTATATAAGTTAATAAAATTAGCATGGCCTTCTA

hide sequence

RefSeq Acc Id:

XM_039096943 ⟹ XP_038952871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	15,300,529 - 15,307,319 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_892000	(Get FASTA)	NCBI Sequence Viewer
	XP_006254526	(Get FASTA)	NCBI Sequence Viewer
	XP_006254527	(Get FASTA)	NCBI Sequence Viewer
	XP_038952871	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAQ16149	(Get FASTA)	NCBI Sequence Viewer
	EDL76127	(Get FASTA)	NCBI Sequence Viewer
	EDL76128	(Get FASTA)	NCBI Sequence Viewer
	EDL76129	(Get FASTA)	NCBI Sequence Viewer
	Q7TNK3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_892000 ⟸ NM_182955

- UniProtKB:

Q7TNK3 (UniProtKB/Swiss-Prot), A6J2J7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSAQSVEEDSILIIPNPDEEEKILRVKLEEDPDGEEGSSISWNHLPDPEIFRQRFRQFGYQDSP
GPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPRELQTLVREHHPENGEEAVTVLE
DLESELDDPGQPVSLRRRKREVLVEEIASQEDAQGLPSSELDAVENQLKWASWELHSLRHCDDD
ATAENGALAPKQEIASAGESHEVPGTLNIGVPQIFKYGETCFPKGRFERKRNPSRKKQHICDEC
GKHFSQGSALILHQRIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNS
GLINHQRIHTGEKPYECVQCGKSYSQSSNLFRHQRRHNAEKLLNVVKV

hide sequence

RefSeq Acc Id:	XP_006254526 ⟸ XM_006254464
- Peptide Label:	isoform X1
- UniProtKB:	Q7TNK3 (UniProtKB/Swiss-Prot), A6J2J7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAQSVEEDSILIIPNPDEEEKILRVKLEEDPDGEEGSSISWNHLPDPEIFRQRFRQFGYQDSP GPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPRELQTLVREHHPENGEEAVTVLE DLESELDDPGQPVSLRRRKREVLVEEIASQEDAQGLPSSELDAVENQLKWASWELHSLRHCDDD ATAENGALAPKQEIASAGESHEVPGTLNIGVPQIFKYGETCFPKGRFERKRNPSRKKQHICDEC GKHFSQGSALILHQRIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNS GLINHQRIHTGEKPYECVQCGKSYSQSSNLFRHQRRHNAEKLLNVVKV hide sequence

RefSeq Acc Id:	XP_006254527 ⟸ XM_006254465
- Peptide Label:	isoform X1
- UniProtKB:	Q7TNK3 (UniProtKB/Swiss-Prot), A6J2J7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAQSVEEDSILIIPNPDEEEKILRVKLEEDPDGEEGSSISWNHLPDPEIFRQRFRQFGYQDSP GPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPRELQTLVREHHPENGEEAVTVLE DLESELDDPGQPVSLRRRKREVLVEEIASQEDAQGLPSSELDAVENQLKWASWELHSLRHCDDD ATAENGALAPKQEIASAGESHEVPGTLNIGVPQIFKYGETCFPKGRFERKRNPSRKKQHICDEC GKHFSQGSALILHQRIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNS GLINHQRIHTGEKPYECVQCGKSYSQSSNLFRHQRRHNAEKLLNVVKV hide sequence

RefSeq Acc Id:

ENSRNOP00000022304 ⟸ ENSRNOT00000022304

RefSeq Acc Id:	XP_038952871 ⟸ XM_039096943
- Peptide Label:	isoform X2

Protein Domains

C2H2-type SCAN box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q7TNK3-F1-model_v2	AlphaFold	Q7TNK3	1-368	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:727963	AgrOrtholog
BioCyc Gene	G2FUF-8164	BioCyc
Ensembl Genes	ENSRNOG00000016562	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000022304	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000022304	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.4020.10	UniProtKB/Swiss-Prot
	Classic Zinc Finger	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DNA breaking-rejoining enzymes	UniProtKB/TrEMBL
InterPro	SCAN_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:360204	UniProtKB/Swiss-Prot
NCBI Gene	360204	ENTREZGENE
PANTHER	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 24	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	SCAN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Zfp24	PhenoGen
PROSITE	SCAN_BOX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	SCAN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	beta-beta-alpha zinc fingers	UniProtKB/TrEMBL
	Retrovirus capsid dimerization domain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF57667	UniProtKB/Swiss-Prot
UniProt	A6J2J7	ENTREZGENE, UniProtKB/TrEMBL
	Q7TNK3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-10-30	Zfp24	zinc finger protein 24	Zfp191	zinc finger protein 191	Name and Symbol changed	629549	APPROVED
2005-07-08	Zfp191	zinc finger protein 191			Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar