THUMPD3-AS1 (THUMPD3 antisense RNA 1) - Rat Genome Database

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Gene: THUMPD3-AS1 (THUMPD3 antisense RNA 1) Homo sapiens
Analyze
Symbol: THUMPD3-AS1
Name: THUMPD3 antisense RNA 1
RGD ID: 7152200
HGNC Page HGNC:44478
Description: INTERACTS WITH acrylamide; aflatoxin B1; cisplatin
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: RP11-58B17.1; SETD5-AS1
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3839,385,264 - 9,397,494 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl39,349,689 - 9,398,579 (-)EnsemblGRCh38hg38GRCh38
GRCh3739,426,948 - 9,439,178 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3639,410,634 - 9,413,746 (-)NCBINCBI36Build 36hg18NCBI36
Celera39,365,238 - 9,373,875 (-)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef39,367,292 - 9,375,928 (-)NCBIHuRef
CHM1_139,380,768 - 9,389,405 (-)NCBICHM1_1
T2T-CHM13v2.039,377,203 - 9,389,432 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:18037879   PMID:23613140   PMID:28986522   PMID:30280788   PMID:31619268   PMID:34509934   PMID:34588321   PMID:35538197   PMID:36017917  


Genomics

Comparative Map Data
THUMPD3-AS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3839,385,264 - 9,397,494 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl39,349,689 - 9,398,579 (-)EnsemblGRCh38hg38GRCh38
GRCh3739,426,948 - 9,439,178 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3639,410,634 - 9,413,746 (-)NCBINCBI36Build 36hg18NCBI36
Celera39,365,238 - 9,373,875 (-)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef39,367,292 - 9,375,928 (-)NCBIHuRef
CHM1_139,380,768 - 9,389,405 (-)NCBICHM1_1
T2T-CHM13v2.039,377,203 - 9,389,432 (-)NCBIT2T-CHM13v2.0
Gt(ROSA)26Sor
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396113,044,389 - 113,054,205 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6113,043,843 - 113,054,294 (-)EnsemblGRCm39 Ensembl
GRCm386113,067,428 - 113,077,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6113,067,428 - 113,077,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv376113,017,422 - 113,027,238 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera6114,896,319 - 114,906,158 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map652.73NCBI
Thumpd3-as1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84147,766,302 - 147,772,808 (-)NCBIGRCr8
mRatBN7.24146,210,520 - 146,217,026 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx4151,594,826 - 151,601,332 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04147,375,638 - 147,382,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04145,997,047 - 146,003,553 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04145,010,882 - 145,017,388 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04208,309,239 - 208,315,698 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4134,769,712 - 134,776,218 (-)NCBICelera
Cytogenetic Map4q42NCBI

Variants

.
Variants in THUMPD3-AS1
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3p26.1-25.3(chr3:8038727-11240931)x4 copy number gain See cases [RCV000135641] Chr3:8038727..11240931 [GRCh38]
Chr3:8080414..11282617 [GRCh37]
Chr3:8055414..11257617 [NCBI36]
Chr3:3p26.1-25.3
likely pathogenic
GRCh38/hg38 3p26.3-25.3(chr3:52266-9450310)x1 copy number loss See cases [RCV000137109] Chr3:52266..9450310 [GRCh38]
Chr3:93949..9491994 [GRCh37]
Chr3:68949..9466994 [NCBI36]
Chr3:3p26.3-25.3
pathogenic
GRCh38/hg38 3p25.3-25.2(chr3:9394874-11690612)x1 copy number loss See cases [RCV000137433] Chr3:9394874..11690612 [GRCh38]
Chr3:9436558..11732086 [GRCh37]
Chr3:9411558..11707086 [NCBI36]
Chr3:3p25.3-25.2
pathogenic
GRCh38/hg38 3p26.1-25.2(chr3:7975734-12636917)x3 copy number gain See cases [RCV000137309] Chr3:7975734..12636917 [GRCh38]
Chr3:8017421..12678416 [GRCh37]
Chr3:7992421..12653416 [NCBI36]
Chr3:3p26.1-25.2
likely pathogenic
GRCh38/hg38 3p25.3(chr3:8812036-9953438)x3 copy number gain See cases [RCV000137329] Chr3:8812036..9953438 [GRCh38]
Chr3:8853722..9995122 [GRCh37]
Chr3:8828722..9970122 [NCBI36]
Chr3:3p25.3
uncertain significance
GRCh38/hg38 3p26.3-25.2(chr3:32241-12681483)x1 copy number loss See cases [RCV000138143] Chr3:32241..12681483 [GRCh38]
Chr3:73914..12722982 [GRCh37]
Chr3:48914..12697982 [NCBI36]
Chr3:3p26.3-25.2
pathogenic
GRCh38/hg38 3p26.3-24.1(chr3:32241-30064208)x3 copy number gain See cases [RCV000138004] Chr3:32241..30064208 [GRCh38]
Chr3:73914..30105699 [GRCh37]
Chr3:48914..30080703 [NCBI36]
Chr3:3p26.3-24.1
pathogenic
GRCh38/hg38 3p26.3-24.3(chr3:32241-20334387)x3 copy number gain See cases [RCV000137941] Chr3:32241..20334387 [GRCh38]
Chr3:73914..20375879 [GRCh37]
Chr3:48914..20350883 [NCBI36]
Chr3:3p26.3-24.3
pathogenic
GRCh38/hg38 3p26.3-25.3(chr3:32241-11379835)x1 copy number loss See cases [RCV000138376] Chr3:32241..11379835 [GRCh38]
Chr3:73914..11421309 [GRCh37]
Chr3:48914..11396309 [NCBI36]
Chr3:3p26.3-25.3
pathogenic|likely benign
GRCh38/hg38 3p25.3(chr3:8941623-10151752)x3 copy number gain See cases [RCV000138535] Chr3:8941623..10151752 [GRCh38]
Chr3:8983307..10193436 [GRCh37]
Chr3:8958307..10168436 [NCBI36]
Chr3:3p25.3
likely benign|uncertain significance
GRCh38/hg38 3p26.3-25.3(chr3:32241-9469506)x1 copy number loss See cases [RCV000139253] Chr3:32241..9469506 [GRCh38]
Chr3:73914..9511190 [GRCh37]
Chr3:48914..9486190 [NCBI36]
Chr3:3p26.3-25.3
pathogenic
GRCh38/hg38 3p25.3(chr3:9142303-9793982)x3 copy number gain See cases [RCV000139348] Chr3:9142303..9793982 [GRCh38]
Chr3:9183987..9835666 [GRCh37]
Chr3:9158987..9810666 [NCBI36]
Chr3:3p25.3
uncertain significance
GRCh38/hg38 3p26.3-25.1(chr3:32241-13613818)x3 copy number gain See cases [RCV000138946] Chr3:32241..13613818 [GRCh38]
Chr3:73914..13655318 [GRCh37]
Chr3:48914..13630319 [NCBI36]
Chr3:3p26.3-25.1
pathogenic
GRCh38/hg38 3p25.3(chr3:8320124-9395968)x1 copy number loss See cases [RCV000140519] Chr3:8320124..9395968 [GRCh38]
Chr3:8361812..9437652 [GRCh37]
Chr3:8336812..9412652 [NCBI36]
Chr3:3p25.3
pathogenic
GRCh38/hg38 3p26.3-25.3(chr3:32241-9574994)x1 copy number loss See cases [RCV000140239] Chr3:32241..9574994 [GRCh38]
Chr3:73914..9616678 [GRCh37]
Chr3:48914..9591678 [NCBI36]
Chr3:3p26.3-25.3
pathogenic
GRCh38/hg38 3p26.3-22.1(chr3:53308-41381521)x3 copy number gain See cases [RCV000141810] Chr3:53308..41381521 [GRCh38]
Chr3:94991..41423012 [GRCh37]
Chr3:69991..41398016 [NCBI36]
Chr3:3p26.3-22.1
pathogenic
GRCh38/hg38 3p26.3-25.3(chr3:20213-11221602)x1 copy number loss See cases [RCV000141731] Chr3:20213..11221602 [GRCh38]
Chr3:61891..11263288 [GRCh37]
Chr3:36891..11238288 [NCBI36]
Chr3:3p26.3-25.3
pathogenic
GRCh38/hg38 3p26.3-25.3(chr3:32241-10323124)x1 copy number loss See cases [RCV000143325] Chr3:32241..10323124 [GRCh38]
Chr3:73914..10364808 [GRCh37]
Chr3:48914..10339808 [NCBI36]
Chr3:3p26.3-25.3
pathogenic
GRCh38/hg38 3p26.3-25.3(chr3:32241-10631310)x1 copy number loss See cases [RCV000143173] Chr3:32241..10631310 [GRCh38]
Chr3:73914..10672995 [GRCh37]
Chr3:48914..10647995 [NCBI36]
Chr3:3p26.3-25.3
pathogenic
GRCh38/hg38 3p26.1-25.1(chr3:7356110-14360442)x3 copy number gain See cases [RCV000143766] Chr3:7356110..14360442 [GRCh38]
Chr3:7397797..14401942 [GRCh37]
Chr3:7372797..14376946 [NCBI36]
Chr3:3p26.1-25.1
pathogenic
GRCh38/hg38 3p26.3-25.3(chr3:688897-11051142)x1 copy number loss See cases [RCV000143706] Chr3:688897..11051142 [GRCh38]
Chr3:730581..11092828 [GRCh37]
Chr3:705581..11067828 [NCBI36]
Chr3:3p26.3-25.3
pathogenic
GRCh38/hg38 3p26.3-25.3(chr3:52266-11089569)x1 copy number loss See cases [RCV000051447] Chr3:52266..11089569 [GRCh38]
Chr3:93949..11131255 [GRCh37]
Chr3:68949..11106255 [NCBI36]
Chr3:3p26.3-25.3
pathogenic
GRCh38/hg38 3p26.3-25.3(chr3:63843-9507969)x1 copy number loss See cases [RCV000051476] Chr3:63843..9507969 [GRCh38]
Chr3:105526..9549653 [GRCh37]
Chr3:80526..9524653 [NCBI36]
Chr3:3p26.3-25.3
pathogenic
GRCh38/hg38 3p26.1-25.3(chr3:7400936-9450451)x1 copy number loss See cases [RCV000051479] Chr3:7400936..9450451 [GRCh38]
Chr3:7442623..9492135 [GRCh37]
Chr3:7417623..9467135 [NCBI36]
Chr3:3p26.1-25.3
pathogenic
GRCh38/hg38 3p25.3-25.2(chr3:8581778-12015238)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051480]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051480]|See cases [RCV000051480] Chr3:8581778..12015238 [GRCh38]
Chr3:8623464..12056738 [GRCh37]
Chr3:8598464..12031738 [NCBI36]
Chr3:3p25.3-25.2
pathogenic
GRCh38/hg38 3p25.3(chr3:9393349-9956171)x1 copy number loss See cases [RCV000051481] Chr3:9393349..9956171 [GRCh38]
Chr3:9435033..9997855 [GRCh37]
Chr3:9410033..9972855 [NCBI36]
Chr3:3p25.3
pathogenic
GRCh38/hg38 3p26.3-24.3(chr3:52066-20280127)x3 copy number gain See cases [RCV000051690] Chr3:52066..20280127 [GRCh38]
Chr3:93749..20321619 [GRCh37]
Chr3:68749..20296623 [NCBI36]
Chr3:3p26.3-24.3
pathogenic
GRCh38/hg38 3p26.3-24.1(chr3:52266-29248782)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051718]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051718]|See cases [RCV000051718] Chr3:52266..29248782 [GRCh38]
Chr3:93949..29290273 [GRCh37]
Chr3:68949..29265277 [NCBI36]
Chr3:3p26.3-24.1
pathogenic
GRCh38/hg38 3p26.3-24.3(chr3:63843-19510600)x3 copy number gain See cases [RCV000051719] Chr3:63843..19510600 [GRCh38]
Chr3:105526..19552092 [GRCh37]
Chr3:80526..19527096 [NCBI36]
Chr3:3p26.3-24.3
pathogenic
GRCh38/hg38 3p25.3(chr3:9221810-9727021)x3 copy number gain See cases [RCV000050855] Chr3:9221810..9727021 [GRCh38]
Chr3:9263494..9768705 [GRCh37]
Chr3:9238494..9743705 [NCBI36]
Chr3:3p25.3
uncertain significance
GRCh38/hg38 3p26.3-22.2(chr3:52266-37148076)x3 copy number gain See cases [RCV000051097] Chr3:52266..37148076 [GRCh38]
Chr3:93949..37189567 [GRCh37]
Chr3:68949..37164571 [NCBI36]
Chr3:3p26.3-22.2
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2384
Count of miRNA genes:880
Interacting mature miRNAs:1029
Transcripts:ENST00000383834, ENST00000467069, ENST00000468186, ENST00000469846, ENST00000480904, ENST00000481221, ENST00000489616, ENST00000494680, ENST00000498199, ENST00000518437, ENST00000519043, ENST00000520396, ENST00000520447, ENST00000520629, ENST00000521267, ENST00000521609, ENST00000521708, ENST00000522221, ENST00000522525, ENST00000523354, ENST00000524210
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH93837  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3739,430,726 - 9,430,890UniSTSGRCh37
Build 3639,405,726 - 9,405,890RGDNCBI36
Celera39,365,427 - 9,365,591RGD
Cytogenetic Map3p25.3UniSTS
HuRef39,367,481 - 9,367,645UniSTS
GeneMap99-GB4 RH Map346.81UniSTS
D3S4445  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3739,438,037 - 9,438,255UniSTSGRCh37
Build 3639,413,037 - 9,413,255RGDNCBI36
Celera39,372,738 - 9,372,956RGD
Cytogenetic Map3p25.3UniSTS
HuRef39,374,791 - 9,375,009UniSTS
SGC31297  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3739,438,119 - 9,438,249UniSTSGRCh37
Build 3639,413,119 - 9,413,249RGDNCBI36
Celera39,372,820 - 9,372,950RGD
Cytogenetic Map3p25.3UniSTS
HuRef39,374,873 - 9,375,003UniSTS
GeneMap99-GB4 RH Map346.91UniSTS
Whitehead-RH Map352.3UniSTS
SHGC-64839  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3739,431,867 - 9,432,064UniSTSGRCh37
Build 3639,406,867 - 9,407,064RGDNCBI36
Celera39,366,568 - 9,366,765RGD
Cytogenetic Map3p25.3UniSTS
HuRef39,368,622 - 9,368,819UniSTS
TNG Radiation Hybrid Map35739.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 587 660 1005 154 694 39 1362 279 1216 58 1091 1011 122 89 1064 1
Low 1850 2263 720 469 1193 424 2993 1915 2517 361 367 602 52 1 1115 1724 5 2
Below cutoff 2 66 1 1 64 2 1 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_027007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_132780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_132781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC018506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI168488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI248388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL110136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW237468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC044625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU621410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX953112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB567546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY142091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OA987785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OA987786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OA987787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OA987788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000467069
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,389,492 - 9,397,429 (-)Ensembl
RefSeq Acc Id: ENST00000468186
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,349,689 - 9,396,654 (-)Ensembl
RefSeq Acc Id: ENST00000469846
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,848 - 9,397,494 (-)Ensembl
RefSeq Acc Id: ENST00000480904
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,391,365 - 9,397,032 (-)Ensembl
RefSeq Acc Id: ENST00000481221
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,874 - 9,397,474 (-)Ensembl
RefSeq Acc Id: ENST00000489616
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,390,138 - 9,396,634 (-)Ensembl
RefSeq Acc Id: ENST00000494680
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,389,699 - 9,397,439 (-)Ensembl
RefSeq Acc Id: ENST00000498199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,391,381 - 9,396,624 (-)Ensembl
RefSeq Acc Id: ENST00000518437
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,390,014 - 9,397,504 (-)Ensembl
RefSeq Acc Id: ENST00000519043
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,385,264 - 9,398,579 (-)Ensembl
RefSeq Acc Id: ENST00000520396
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,389,511 - 9,396,605 (-)Ensembl
RefSeq Acc Id: ENST00000520447
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,883 - 9,397,495 (-)Ensembl
RefSeq Acc Id: ENST00000520629
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,385,822 - 9,396,623 (-)Ensembl
RefSeq Acc Id: ENST00000521267
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,389,360 - 9,396,605 (-)Ensembl
RefSeq Acc Id: ENST00000521609
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,385,795 - 9,397,428 (-)Ensembl
RefSeq Acc Id: ENST00000521708
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,391,347 - 9,398,367 (-)Ensembl
RefSeq Acc Id: ENST00000522221
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,390,132 - 9,397,473 (-)Ensembl
RefSeq Acc Id: ENST00000522525
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,849 - 9,397,504 (-)Ensembl
RefSeq Acc Id: ENST00000523354
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,385,836 - 9,390,619 (-)Ensembl
RefSeq Acc Id: ENST00000524210
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,884 - 9,396,658 (-)Ensembl
RefSeq Acc Id: ENST00000654392
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,387,434 - 9,396,683 (-)Ensembl
RefSeq Acc Id: ENST00000657509
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,385,612 - 9,397,494 (-)Ensembl
RefSeq Acc Id: ENST00000660127
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,390,008 - 9,391,248 (-)Ensembl
RefSeq Acc Id: ENST00000660363
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,874 - 9,395,579 (-)Ensembl
RefSeq Acc Id: ENST00000661342
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,377,379 - 9,397,496 (-)Ensembl
RefSeq Acc Id: ENST00000661714
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,874 - 9,397,452 (-)Ensembl
RefSeq Acc Id: ENST00000664273
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,955 - 9,397,452 (-)Ensembl
RefSeq Acc Id: ENST00000664441
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,853 - 9,397,494 (-)Ensembl
RefSeq Acc Id: ENST00000664877
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,385,265 - 9,388,370 (-)Ensembl
RefSeq Acc Id: ENST00000665171
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,102 - 9,391,904 (-)Ensembl
RefSeq Acc Id: ENST00000665983
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,874 - 9,397,035 (-)Ensembl
RefSeq Acc Id: ENST00000667458
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,876 - 9,397,452 (-)Ensembl
RefSeq Acc Id: ENST00000668063
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,388,800 - 9,394,070 (-)Ensembl
RefSeq Acc Id: ENST00000685076
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,385,790 - 9,397,495 (-)Ensembl
RefSeq Acc Id: ENST00000685952
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,385,795 - 9,397,442 (-)Ensembl
RefSeq Acc Id: ENST00000687342
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,385,790 - 9,397,439 (-)Ensembl
RefSeq Acc Id: ENST00000689821
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,390,014 - 9,397,439 (-)Ensembl
RefSeq Acc Id: ENST00000702536
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,385,795 - 9,397,439 (-)Ensembl
RefSeq Acc Id: ENST00000702696
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,385,795 - 9,397,440 (-)Ensembl
RefSeq Acc Id: NR_027007
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3839,388,845 - 9,397,494 (-)NCBI
GRCh3739,430,537 - 9,439,174 (-)NCBI
HuRef39,367,292 - 9,375,928 (-)NCBI
CHM1_139,380,760 - 9,389,409 (-)NCBI
T2T-CHM13v2.039,380,784 - 9,389,432 (-)NCBI
Sequence:
RefSeq Acc Id: NR_132780
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3839,388,845 - 9,397,494 (-)NCBI
CHM1_139,380,760 - 9,389,409 (-)NCBI
T2T-CHM13v2.039,380,784 - 9,389,432 (-)NCBI
Sequence:
RefSeq Acc Id: NR_132781
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3839,385,264 - 9,396,623 (-)NCBI
CHM1_139,377,171 - 9,388,538 (-)NCBI
T2T-CHM13v2.039,377,203 - 9,388,561 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAC87421 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:15095577
Promoter ID:EPDNEWNC_H400
Type:initiation region
Name:THUMPD3-AS1_2
Description:THUMPD3 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44478]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3839,391,838 - 9,391,898EPDNEWNC
RGD ID:15095576
Promoter ID:EPDNEWNC_H401
Type:initiation region
Name:THUMPD3-AS1_4
Description:THUMPD3 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44478]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3839,396,681 - 9,396,741EPDNEWNC
RGD ID:15095575
Promoter ID:EPDNEWNC_H402
Type:initiation region
Name:THUMPD3-AS1_3
Description:THUMPD3 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44478]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3839,397,035 - 9,397,095EPDNEWNC
RGD ID:15095573
Promoter ID:EPDNEWNC_H403
Type:initiation region
Name:THUMPD3-AS1_1
Description:THUMPD3 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44478]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3839,397,439 - 9,397,499EPDNEWNC

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:44478 AgrOrtholog
COSMIC THUMPD3-AS1 COSMIC
Ensembl Genes ENSG00000206573 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000481221 ENTREZGENE
  ENST00000522525 ENTREZGENE
GTEx ENSG00000206573 GTEx
HGNC ID HGNC:44478 ENTREZGENE
Human Proteome Map THUMPD3-AS1 Human Proteome Map
NCBI Gene SETD5-AS1 ENTREZGENE
RNAcentral URS00008E394C RNACentral
  URS00008E395D RNACentral
  URS00008E3988 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-01-21 THUMPD3-AS1  THUMPD3 antisense RNA 1  SETD5-AS1  SETD5 antisense RNA 1  Symbol and/or name change 5135510 APPROVED