Advanced Search (OLGA)

Gene: Clmp (CXADR-like membrane protein) Rattus norvegicus

Analyze

Symbol:

Clmp

Name:

CXADR-like membrane protein

RGD ID:

708569

Description:

Predicted to be involved in digestive tract development and postsynaptic modulation of chemical synaptic transmission. Predicted to be located in bicellular tight junction and cytoplasmic microtubule. Predicted to be active in postsynaptic membrane. Human ortholog(s) of this gene implicated in short bowel syndrome. Orthologous to human CLMP (CXADR like membrane protein); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ACAM; adipocyte adhesion molecule; adipocyte-specific adhesion molecule; Asam; CAR-like membrane protein; coxsackie- and adenovirus receptor-like membrane protein; Ol16; visceral adipose tissue-specific transmembrane protein OL-16

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLMP (CXADR like membrane protein)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Clmp (CXADR-like membrane protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Clmp (CXADR like cell adhesion molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CLMP (CXADR like cell adhesion molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CLMP (CXADR like membrane protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Clmp (CXADR like cell adhesion molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CLMP (CXADR like membrane protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CLMP (CXADR like cell adhesion molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Clmp (CXADR like cell adhesion molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Clmp (CXADR-like membrane protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CLMP (CXADR like membrane protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	clmpb (CXADR like membrane protein b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	clmpb (CXADR like membrane protein b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	clmp	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	49,957,639 - 50,065,959 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	49,957,720 - 50,065,959 (+)	Ensembl				GRCr8
mRatBN7.2	8	41,060,527 - 41,168,841 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	41,060,799 - 41,168,838 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	46,559,569 - 46,668,056 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	44,838,179 - 44,946,657 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	42,705,779 - 42,814,242 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	44,846,685 - 44,975,460 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	44,847,157 - 44,975,457 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	46,020,805 - 46,148,061 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	43,661,696 - 43,769,479 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	40,662,471 - 40,768,359 (+)	NCBI		Celera
RGSC_v3.1	8	43,670,461 - 43,778,242 (+)	NCBI
Cytogenetic Map	8	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 11 partial duplication syndrome (ISO)

Dwarfism (ISO)

genetic disease (ISO)

intestinal pseudo-obstruction (ISO)

schizophrenia (ISO)

short bowel syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(S)-nicotine (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chloroprene (ISO)

chromium(6+) (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

dexamethasone (ISO)

diallyl trisulfide (ISO)

Dibutyl phosphate (ISO)

diuron (EXP)

doxorubicin (ISO)

hydrogen peroxide (ISO)

hydroquinone (ISO)

indometacin (ISO)

ketamine (EXP)

kojic acid (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

nicotine (ISO)

oxaliplatin (EXP)

ozone (ISO)

paraquat (EXP,ISO)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

permethrin (EXP)

potassium chromate (ISO)

propanal (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

temozolomide (ISO)

testosterone (ISO)

tetraphene (ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

tremolite asbestos (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

digestive tract development (ISO)

postsynaptic modulation of chemical synaptic transmission (ISO)

Cellular Component

anchoring junction (IEA)

bicellular tight junction (IEA,ISO)

cell junction (IEA)

cytoplasmic microtubule (IEA,ISO,ISS)

membrane (IEA)

plasma membrane (IEA)

postsynaptic membrane (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification of adipocyte adhesion molecule (ACAM), a novel CTX gene family, implicated in adipocyte maturation and development of obesity.	Eguchi J, etal., Biochem J. 2005 Apr 15;387(Pt 2):343-53.
2.	CLMP, a novel member of the CTX family and a new component of epithelial tight junctions.	Raschperger E, etal., J Biol Chem 2004 Jan 2;279(1):796-804. Epub 2003 Oct 22.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:17538635	PMID:19581412	PMID:22155368	PMID:23264731	PMID:23376485	PMID:25400132	PMID:33259866

Genomics

Comparative Map Data

Clmp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	49,957,639 - 50,065,959 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	49,957,720 - 50,065,959 (+)	Ensembl				GRCr8
mRatBN7.2	8	41,060,527 - 41,168,841 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	41,060,799 - 41,168,838 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	46,559,569 - 46,668,056 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	44,838,179 - 44,946,657 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	42,705,779 - 42,814,242 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	44,846,685 - 44,975,460 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	44,847,157 - 44,975,457 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	46,020,805 - 46,148,061 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	43,661,696 - 43,769,479 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	40,662,471 - 40,768,359 (+)	NCBI		Celera
RGSC_v3.1	8	43,670,461 - 43,778,242 (+)	NCBI
Cytogenetic Map	8	q22	NCBI

CLMP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	123,069,872 - 123,195,248 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	123,069,872 - 123,195,291 (-)	Ensembl			hg38	GRCh38
GRCh37	11	122,940,580 - 123,065,956 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	122,448,230 - 122,571,217 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	120,102,350 - 120,225,315 (-)	NCBI		Celera
Cytogenetic Map	11	q24.1	NCBI
HuRef	11	118,884,692 - 119,007,600 (-)	NCBI		HuRef
CHM1_1	11	122,829,032 - 122,951,924 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	123,098,457 - 123,223,763 (-)	NCBI		T2T-CHM13v2.0

Clmp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	40,596,975 - 40,696,849 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	40,597,258 - 40,696,615 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	40,682,123 - 40,785,553 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	40,685,962 - 40,785,319 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	40,494,047 - 40,592,129 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	40,437,033 - 40,535,115 (+)	NCBI		MGSCv36	mm8
Celera	9	37,919,429 - 38,017,479 (+)	NCBI		Celera
Cytogenetic Map	9	A5.1	NCBI
cM Map	9	21.42	NCBI

Clmp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	23,876,003 - 23,970,119 (-)	Ensembl
ChiLan1.0	NW_004955412	23,876,003 - 23,984,603 (-)	NCBI	ChiLan1.0	ChiLan1.0

CLMP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	123,771,000 - 123,892,154 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	124,874,977 - 124,997,290 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	117,902,792 - 118,023,936 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	121,824,389 - 121,942,055 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	121,824,398 - 121,942,055 (-)	Ensembl			panPan2	panpan1.1

CLMP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	11,255,054 - 11,289,578 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	11,267,038 - 11,286,682 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	11,246,302 - 11,345,522 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	11,141,243 - 11,240,485 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	11,141,239 - 11,240,456 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	11,244,300 - 11,343,931 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	11,175,179 - 11,276,711 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	11,221,449 - 11,320,980 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Clmp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	104,667,596 - 104,763,997 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	7,587,272 - 7,685,144 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	7,591,223 - 7,685,040 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLMP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	49,989,767 - 50,093,417 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	49,989,967 - 50,094,223 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	55,394,444 - 55,402,185 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLMP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	114,461,052 - 114,575,178 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	114,462,833 - 114,575,154 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	11,630,291 - 11,668,135 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Clmp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624880	1,965,476 - 2,059,420 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624880	1,965,264 - 2,063,241 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Clmp
1464 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	439
Count of miRNA genes:	242
Interacting mature miRNAs:	296
Transcripts:	ENSRNOT00000010607
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	30848154	61290444	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
61337	Bp22	Blood pressure QTL 22	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	42692818	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	58482492	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	26644912	46711092	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	28242912	53961020	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	29502665	50095447	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	27205715	54998217	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat

Markers in Region

D8Mit13

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	41,101,901 - 41,102,031 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	44,888,103 - 44,888,234	NCBI	Rnor6.0
Rnor_5.0	8	46,107,597 - 46,107,728	UniSTS	Rnor5.0
RGSC_v3.4	8	43,702,470 - 43,702,602	RGD	RGSC3.4
RGSC_v3.4	8	43,702,471 - 43,702,602	UniSTS	RGSC3.4
Celera	8	40,701,842 - 40,701,969	UniSTS
RGSC_v3.1	8	43,711,221 - 43,711,522	RGD
Cytogenetic Map	8	q22	UniSTS

AW557819

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	41,166,362 - 41,166,499 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	44,972,982 - 44,973,118	NCBI	Rnor6.0
Rnor_5.0	8	46,023,147 - 46,023,283	UniSTS	Rnor5.0
RGSC_v3.4	8	43,767,001 - 43,767,137	UniSTS	RGSC3.4
Celera	8	40,765,881 - 40,766,017	UniSTS
Cytogenetic Map	8	q22	UniSTS

BF389136

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	41,161,184 - 41,161,386 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	44,967,817 - 44,968,018	NCBI	Rnor6.0
Rnor_5.0	8	46,027,900 - 46,028,101	UniSTS	Rnor5.0
RGSC_v3.4	8	43,761,950 - 43,762,151	UniSTS	RGSC3.4
Celera	8	40,760,705 - 40,760,906	UniSTS
RH 3.4 Map	8	394.3	UniSTS
Cytogenetic Map	8	q22	UniSTS

BE105387

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	41,168,575 - 41,168,668 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	44,975,195 - 44,975,287	NCBI	Rnor6.0
Rnor_5.0	8	46,020,978 - 46,021,070	UniSTS	Rnor5.0
RGSC_v3.4	8	43,769,214 - 43,769,306	UniSTS	RGSC3.4
Celera	8	40,768,094 - 40,768,186	UniSTS
RH 3.4 Map	8	394.9	UniSTS
Cytogenetic Map	8	q22	UniSTS

RH139594

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	41,168,200 - 41,168,380 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	44,974,820 - 44,974,999	NCBI	Rnor6.0
Rnor_5.0	8	46,021,266 - 46,021,445	UniSTS	Rnor5.0
RGSC_v3.4	8	43,768,839 - 43,769,018	UniSTS	RGSC3.4
Celera	8	40,767,719 - 40,767,898	UniSTS
Cytogenetic Map	8	q22	UniSTS

RH140450

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	41,168,215 - 41,168,380 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	44,974,835 - 44,974,999	NCBI	Rnor6.0
Rnor_5.0	8	46,021,266 - 46,021,430	UniSTS	Rnor5.0
RGSC_v3.4	8	43,768,854 - 43,769,018	UniSTS	RGSC3.4
Celera	8	40,767,734 - 40,767,898	UniSTS
RH 3.4 Map	8	394.3	UniSTS
Cytogenetic Map	8	q22	UniSTS

AU049061

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	49,999,003 - 49,999,290 (+)	Marker Load Pipeline
mRatBN7.2	8	41,101,884 - 41,102,169 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	44,888,086 - 44,888,372	NCBI	Rnor6.0
Rnor_5.0	8	46,107,459 - 46,107,745	UniSTS	Rnor5.0
RGSC_v3.4	8	43,702,454 - 43,702,740	UniSTS	RGSC3.4
Celera	8	40,701,825 - 40,702,107	UniSTS
Cytogenetic Map	8	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	39	59	6	300	139	11	144	78	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_173154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF302047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000080288 ⟹ ENSRNOP00000069336

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	49,957,925 - 50,065,959 (+)	Ensembl
mRatBN7.2 Ensembl	8	41,060,799 - 41,168,838 (+)	Ensembl
Rnor_6.0 Ensembl	8	44,847,157 - 44,975,457 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108273 ⟹ ENSRNOP00000081711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	50,041,307 - 50,065,959 (+)	Ensembl
mRatBN7.2 Ensembl	8	41,144,185 - 41,168,838 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132711 ⟹ ENSRNOP00000100386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	50,011,814 - 50,065,959 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136872 ⟹ ENSRNOP00000102586

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	49,957,720 - 50,063,756 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172194 ⟹ ENSRNOP00000107144

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	49,971,943 - 50,065,959 (+)	Ensembl

RefSeq Acc Id:

NM_173154 ⟹ NP_775177

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	49,957,925 - 50,065,959 (+)	NCBI
mRatBN7.2	8	41,060,799 - 41,168,841 (+)	NCBI
Rnor_6.0	8	44,847,157 - 44,975,460 (+)	NCBI
Rnor_5.0	8	46,020,805 - 46,148,061 (-)	NCBI
RGSC_v3.4	8	43,661,696 - 43,769,479 (+)	RGD
Celera	8	40,662,471 - 40,768,359 (+)	RGD

Sequence:

show sequence

GCCGCGCCCTGCTCACAGAAGGTCCGTCGGCTGGGCTCGGTCGCCCTGCAGCCAGGCTGCGCTG
AGCCGGGAAGTGCCCGTGTCCGGGGATCGGGATGTCCCTCTTCTTCCTCTGGCTAGTAACCTAT
TATGTTGGAACGCTGGGAACTCACACTGAGATCAAGAGAGTGGCAGAGGAAAAGGTTACCTTGC
CCTGTCACCATCAATTGGGACTTCCTGAGAAAGACACCCTGGACATTGAATGGCTGCTCACGGA
TAATGAAGGGAACCAAAAAGTGGTTATTACGTATTCCAGTCGTCATGTCTACAATAACTTGACT
GAGGAGCAGAAGGGCCGAGTGGCCTTTGCCTCCAACTTCCTGGCGGGAGACGCCTCCCTGCAGA
TCGAGCCTCTGAAACCCAGTGATGAAGGCAGATACACCTGCAAGGTGAAGAATTCAGGACGCTA
TGTCTGGAGCCACGTGATCTTAAAAGTGCTAGTGAGACCATCCAAGCCCAAGTGTGAGTTGGAA
GGAGAGCCGACGGAAGGAAGTGACCTGACGCTACAATGTGAGTCTGCCTCTGGAACCAAGCCCA
TTGTGTATTATTGGCAGCGGATTCGGGAGAAGGAGGGAGAGGATGAACACCTGCCACCCAAATC
TAGAATCGATTACAACAACCCTGGCCGAGTGCTGCTGCAGAACCTCACCATGGCCTCCTCTGGG
CTCTACCAGTGCACAGCAGGCAACGAGGCTGGAAAGGAGAGCTGCGTGGTACGAGTGACTGTAC
AGTATGTGCAGAGCATTGGCATGGTTGCAGGAGCAGTGACAGGCATAGTGGCGGGAGCTCTGCT
CATTTTCCTCTTGATATGGCTCCTAATACGAAGGAAAAGCAAAGAGAGATATGAGGAAGAAGAC
AGACCTAATGAAATCCGAGAAGACGCTGAAGCGCCCCGCGCCCGCCTTGTGAAACCCAGCTCCT
CTTCCTCAGGCTCCCGGAGCTCTCGCTCTGGCTCCTCCTCCACCCGCTCCACCGGGAACAGTGC
CTCCAGAAGCCAGCGGACGCTGTCGAGTGAAGCAGCACCACAGCCCGGGCTAGCCACCCAGGCA
TACAGCCTAATAGGACCGGAAGTGAGAGGTTCTGAACCAAAGAAAGCCCACCATACGACCCTGA
CCAAAGCAGAAACCACACTCAGCACAATGCCCAGCCAGAGCAGAGCCTTCCAAACTGTCTGACT
TAGAGCGGTCTTGGCTTGCACTTTCCCAAAAGTCAGGATCTTAGCCTAGTCACTGGAGCTCGCC
CACCAGCCACGCAAGCCCCTCAGCCAGATTCGATCTCACTTAAGTAGCCGCAGAAATGGCACGG
ACCAGTTCTGACCAGCACCCTCCTTATGTAGGATACCAAACAGACAGAAGGACGAAGGTGGACC
TCTAAAGGCACCTCACTGTGCCTTCAGACAGAGTGGAGGAGGGGAGGGGCCCAAGCTTATTTGG
TGAAAATAGGGGAAAGGTGAGGCTGCACACACCTGAAACATCTTACCTAGGAAGTTGCACCACA
GTCAAGAAGAAGCGGGAATCTCATAGATCAATTTTCTATTCATTTCTGCAAATTTATTGGATTA
GTGTGATTATTCAGATAGTCAAAACAGAAGCCCACGCCTTATAATATACCTATCTGCAACATGT
ACCAGGAGAACTGCGTTTAAGAAATTCACATTAAAAAAAAAAAAAAAAAAGGAGGAGGAAACAC
ATTTTTTTTTCTACTTTGACTTGACTTCTTGTGTCGTGAGGTCTGAACGTTAATTGGGGAGGAT
TTGAAATGGTGGGAGACAGAGAAAAAAAGGGATTTTTCTCTTACCCCACCAGCAGTCAATCTTC
CTATTTCCATGGAACCCTAAAATAACAAATAAGGAGGGAGTCCAACCAAGATGGGACACGGTTC
TCTGAAGAGCTTTCCGTTTTGTTATTCAGAGGATCGTCAACAGATATCAAAACTATTATCCCGG
GGCAGTTGCGGCTCATTACTCCGATTGACCGACTCCCCTAAAGACTTCTCTGCTGGATGTTTCT
AGAAGAAACAGATGCTCACTACATGTCACTTAATGAATGTCCTTAGGGACAGTCCTCTAGAGAA
AGTCTCTCAGGGATGTTGAAAGATCCCCTTGCATACCGCGTCCTACTCCTCTTTCTGTGAACAC
GTGAAACCAGAATTTCAAGACTGGTTGGAATGAGAGGGAGAGTAGACCTTTCTCTCAGTAGGTC
AAAGGACATTTGACACTGGCCCGAAACTTGGCGATTCTCCCATTTCTTTCATTTTAGAAGGATG
CGAATGTGGGACTTTTGATGATTCTAGGCCTTAAATTTCCAGCGGTCATTTCCTAAAGGCACTG
AGAACCCCATACCCCTTCTCACTCCCCGCCGAGGGGCTGAACTGTATCCTCAAGGTCTTCCTTC
TCAGCGGTAGACGCGGACAACAGCGTTGCTGTGGGCTGTAAGGAATGAACTACCATTAGGGAGC
CGGTGGTGAGCGAAACAAGTGGGTGGTGGGAGCGGGTTCAGCTAATGTCTGTTAACATGTTTGC
TGTTGGCATCTGGGAAAGAATTAGCAGAAAGGATTCACTACCAGCAAAAGTATCGGTACACTCA
CACATGGAGAAGAAAGGTGTCTGAGAAATGTAAAAGAGGGGGAAAAAGCAGCCTCTCCGGGATA
AGTAACTTGCCTTTTAGATGGTTTCGATGATCAGGGCACTTTAAGGCACAGCTGCTAAGCCTGA
ATGAGCCCTTCAAGGCAAAGTCACTGGTCACGCGGGTGGAGCAGAGCGTTTCCTTGTGTTGACC
AGGGCAAAGGCTAGGGCAAAGAGGAAGGAAGCCACTGTGGCTGTTGCAATGAAGTAGACTCTGA
AAAAGGACTCAGATGCTGACAGGGAAAAGGTTGATACTCACTACCGCCCCGTGTCTCTGGCTTC
CGACTCCTACGTTTAATTGATATAAGCGCATCCTCACAGGATGTACACACATTTCCTTCTAAAG
TGCCTAGGAAATGATGCTTGCGTTAAGTTGTCTGGGTTCCTTTGGGTGGGCTTTGTGCATGCTA
AAGTGACTGTCCTCACCTAAGTTCTGTCTTCCTTTTAAAGAGGTAGAAATAAGAGACACTGAGG
GAACAACACAGGTGCCTGTCCATTTGAGAGAACCGGCATATTTGAATGCTTCTTATACTAACTC
TTATCTCATTGTAAGAATTTTTTTTTTAAGCCCCTTCCTCTGACTACATGTTTATTCTTCTTGG
AGGATGGTATCCAAGCAAATGTCTCTTCTGCTATGTAATTCTGAGCGTTCTCATTCCTGGAGTC
CCTGAGCCAAGCAAGCTTACGATGAAGGCTGCAGCTGTGCTGTCATGAGCGAACGATTTTCTCA
CCGCTCCCTGCCTTGGAGTGTCCGGTTTCCTGTCTGTGCTTTGCAAGCAGGGATCAGTCCCCGT
GGTCCGAAAAGGAAATTCCAGTTCTTTAAATTTGTTATTAGAAACTAAGACCATTGAATACCCG
AATTACTTTGGAAATTCTTCTCAATGGAAAACTACAATAAAATGCACCAAACAGATTACACTAG
GAGCTGAGAAATTCTGAGAGATAAGGGCCTGAAGTCTTAGTAATGACAGAGCCTCAGAATCAGC
CATTCATGTTTAAATATGAGCCCGAAGACAGAGTGAGAGCCATGACGGGCTCCAAACCTTACTC
CATTGACTTTGCCAACCAAGCCAGCTGAGTCTTTAATGTGAAACAGATAGAAAAGGGAAAAAAA
TAACTGATGGGTAAAAGCAAAAAAAAAATTAATAATAATAAATGTTTGTAAGAAAATGCAGATG
GGGGAATGTGTATGTTTAAAGAATAACCGTTTCAATAAAATGTATAAGCCAAACTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039080937 ⟹ XP_038936865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	49,957,639 - 50,065,959 (+)	NCBI
mRatBN7.2	8	41,060,527 - 41,165,981 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_775177	(Get FASTA)	NCBI Sequence Viewer
	XP_038936865	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAM76974	(Get FASTA)	NCBI Sequence Viewer
	EDL95230	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069336
	ENSRNOP00000069336.1
GenBank Protein	Q8K1G0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_775177 ⟸ NM_173154
- Peptide Label:	precursor
- UniProtKB:	Q8K1G0 (UniProtKB/Swiss-Prot), A6J3Q7 (UniProtKB/TrEMBL), A0A8I5ZS82 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLFFLWLVTYYVGTLGTHTEIKRVAEEKVTLPCHHQLGLPEKDTLDIEWLLTDNEGNQKVVIT YSSRHVYNNLTEEQKGRVAFASNFLAGDASLQIEPLKPSDEGRYTCKVKNSGRYVWSHVILKVL VRPSKPKCELEGEPTEGSDLTLQCESASGTKPIVYYWQRIREKEGEDEHLPPKSRIDYNNPGRV LLQNLTMASSGLYQCTAGNEAGKESCVVRVTVQYVQSIGMVAGAVTGIVAGALLIFLLIWLLIR RKSKERYEEEDRPNEIREDAEAPRARLVKPSSSSSGSRSSRSGSSSTRSTGNSASRSQRTLSSE AAPQPGLATQAYSLIGPEVRGSEPKKAHHTTLTKAETTLSTMPSQSRAFQTV hide sequence

Ensembl Acc Id:

ENSRNOP00000069336 ⟸ ENSRNOT00000080288

RefSeq Acc Id:	XP_038936865 ⟸ XM_039080937
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000081711 ⟸ ENSRNOT00000108273

Ensembl Acc Id:

ENSRNOP00000102586 ⟸ ENSRNOT00000136872

Ensembl Acc Id:

ENSRNOP00000100386 ⟸ ENSRNOT00000132711

Ensembl Acc Id:

ENSRNOP00000107144 ⟸ ENSRNOT00000172194

Protein Domains

Ig-like Ig-like C2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8K1G0-F1-model_v2	AlphaFold	Q8K1G0	1-372	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708569	AgrOrtholog
BioCyc Gene	G2FUF-30835	BioCyc
Ensembl Genes	ENSRNOG00000053239	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000080288	ENTREZGENE
	ENSRNOT00000080288.2	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
InterPro	CLMP	UniProtKB/Swiss-Prot
	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_sub2	UniProtKB/Swiss-Prot
	Ig_V-set	UniProtKB/Swiss-Prot
KEGG Report	rno:286939	UniProtKB/Swiss-Prot
NCBI Gene	286939	ENTREZGENE
PANTHER	CXADR-LIKE MEMBRANE PROTEIN	UniProtKB/Swiss-Prot
	PTHR44783	UniProtKB/Swiss-Prot
Pfam	Ig_3	UniProtKB/Swiss-Prot
	V-set	UniProtKB/Swiss-Prot
PhenoGen	Clmp	PhenoGen
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000053239	RatGTEx
SMART	IGc2	UniProtKB/Swiss-Prot
	IGv	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZS82	ENTREZGENE, UniProtKB/TrEMBL
	A6J3Q7	ENTREZGENE, UniProtKB/TrEMBL
	CLMP_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-28	Clmp	CXADR-like membrane protein	Asam	adipocyte-specific adhesion molecule	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Asam	adipocyte-specific adhesion molecule	Ol16	visceral adipose tissue-specific transmembrane protein OL-16	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM