Serpina12 (serpin family A member 12) - Rat Genome Database

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Gene: Serpina12 (serpin family A member 12) Rattus norvegicus
Analyze
Symbol: Serpina12
Name: serpin family A member 12
RGD ID: 708485
Description: Predicted to enable serine-type endopeptidase inhibitor activity. Involved in glucose metabolic process. Predicted to be located in plasma membrane. Predicted to be active in extracellular space. Used to study obesity and type 2 diabetes mellitus. Orthologous to human SERPINA12 (serpin family A member 12); INTERACTS WITH acrylamide; alpha-Zearalanol; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ol-64; Ol64; serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12; serine (or cysteine) peptidase inhibitor, clade A, member 12; serpin A12; serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12; serpin peptidase inhibitor, clade A, member 12; Vaspin; visceral adipose tissue-derived serine protease inhibitor; visceral adipose tissue-derived serpin; visceral adipose-specific serpin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,717,334 - 128,732,049 (-)NCBIGRCr8
mRatBN7.26122,952,552 - 122,967,271 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,952,552 - 122,967,271 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6123,093,459 - 123,108,201 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06123,388,739 - 123,403,489 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,725,602 - 122,740,273 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,696,501 - 127,711,238 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,696,252 - 127,711,212 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06136,915,080 - 136,930,199 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46128,086,068 - 128,100,843 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16128,089,816 - 128,104,590 (-)NCBI
Celera6120,432,630 - 120,447,329 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Visceral adipose tissue-derived serine protease inhibitor: A unique insulin-sensitizing adipocytokine in obesity. Hida K, etal., Proc Natl Acad Sci U S A 2005 Jul 26;102(30):10610-5. Epub 2005 Jul 19.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18800627   PMID:19554505   PMID:21683791   PMID:22713468   PMID:22837305   PMID:22907691   PMID:23135683   PMID:23307819   PMID:23336174   PMID:23497782   PMID:26264600   PMID:26427130  
PMID:28677772   PMID:30359674   PMID:31014675   PMID:33482192  


Genomics

Comparative Map Data
Serpina12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,717,334 - 128,732,049 (-)NCBIGRCr8
mRatBN7.26122,952,552 - 122,967,271 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,952,552 - 122,967,271 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6123,093,459 - 123,108,201 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06123,388,739 - 123,403,489 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,725,602 - 122,740,273 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,696,501 - 127,711,238 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,696,252 - 127,711,212 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06136,915,080 - 136,930,199 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46128,086,068 - 128,100,843 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16128,089,816 - 128,104,590 (-)NCBI
Celera6120,432,630 - 120,447,329 (-)NCBICelera
Cytogenetic Map6q32NCBI
SERPINA12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381494,487,279 - 94,517,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1494,487,274 - 94,517,844 (-)EnsemblGRCh38hg38GRCh38
GRCh371494,953,616 - 94,984,181 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361494,023,373 - 94,053,934 (-)NCBINCBI36Build 36hg18NCBI36
Build 341494,023,372 - 94,053,934NCBI
Celera1475,009,490 - 75,040,042 (-)NCBICelera
Cytogenetic Map14q32.13NCBI
HuRef1475,133,852 - 75,165,228 (-)NCBIHuRef
CHM1_11494,891,409 - 94,921,974 (-)NCBICHM1_1
T2T-CHM13v2.01488,716,770 - 88,747,326 (-)NCBIT2T-CHM13v2.0
Serpina12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912103,995,028 - 104,010,702 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12103,995,028 - 104,010,702 (-)EnsemblGRCm39 Ensembl
GRCm3812104,028,769 - 104,044,443 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12104,028,769 - 104,044,443 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712105,266,979 - 105,282,653 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612104,429,819 - 104,445,493 (-)NCBIMGSCv36mm8
Celera12105,246,889 - 105,263,012 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1253.05NCBI
Serpina12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543817,833,919 - 17,849,393 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543817,826,596 - 17,849,341 (+)NCBIChiLan1.0ChiLan1.0
SERPINA12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21595,635,461 - 95,666,610 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11494,851,966 - 94,883,115 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01475,110,414 - 75,141,569 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11494,442,931 - 94,473,779 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1494,442,931 - 94,473,779 (-)Ensemblpanpan1.1panPan2
SERPINA12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1863,497,542 - 63,511,701 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl863,497,849 - 63,512,171 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha863,074,096 - 63,088,272 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0863,764,441 - 63,778,617 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl863,764,428 - 63,779,071 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1863,439,686 - 63,453,850 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0863,492,013 - 63,506,194 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0863,822,678 - 63,836,859 (-)NCBIUU_Cfam_GSD_1.0
Serpina12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864010,933,620 - 10,950,032 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493684683,727 - 92,398 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493684683,727 - 92,392 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC106504546
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7115,721,098 - 115,734,978 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17115,720,892 - 115,734,810 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27122,847,583 - 122,861,498 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SERPINA12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12472,273,041 - 72,285,367 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2472,273,186 - 72,285,157 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605359,495,743 - 59,508,247 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Serpina12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247347,191,010 - 7,206,020 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247347,191,049 - 7,204,386 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Serpina12
73 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:50
Interacting mature miRNAs:53
Transcripts:ENSRNOT00000012960
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1300076Glom8Glomerulus QTL 879e-09kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
1 11 1 19 53 51 35 5 35 6 68 21 7 3 31 16

Sequence


Ensembl Acc Id: ENSRNOT00000012960   ⟹   ENSRNOP00000012960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6122,952,552 - 122,967,271 (-)Ensembl
Rnor_6.0 Ensembl6127,696,252 - 127,711,212 (-)Ensembl
RefSeq Acc Id: NM_138825   ⟹   NP_620180
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,717,334 - 128,732,049 (-)NCBI
mRatBN7.26122,952,552 - 122,967,271 (-)NCBI
Rnor_6.06127,696,501 - 127,711,238 (-)NCBI
Rnor_5.06136,915,080 - 136,930,199 (-)NCBI
RGSC_v3.46128,086,068 - 128,100,843 (-)RGD
Celera6120,432,630 - 120,447,329 (-)RGD
Sequence:
RefSeq Acc Id: XM_017594028   ⟹   XP_017449517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86128,717,334 - 128,729,646 (-)NCBI
mRatBN7.26122,952,552 - 122,965,091 (-)NCBI
Rnor_6.06127,696,501 - 127,708,830 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_620180 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449517 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL99574 (Get FASTA)   NCBI Sequence Viewer  
  EDL81794 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000012960
GenBank Protein Q8R4Z1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_620180   ⟸   NM_138825
- Peptide Label: precursor
- UniProtKB: Q8R4Z1 (UniProtKB/Swiss-Prot),   G3V782 (UniProtKB/TrEMBL),   A6JEQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449517   ⟸   XM_017594028
- Peptide Label: isoform X1
- UniProtKB: Q8R4Z1 (UniProtKB/Swiss-Prot),   G3V782 (UniProtKB/TrEMBL),   A6JEQ0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012960   ⟸   ENSRNOT00000012960
Protein Domains
SERPIN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R4Z1-F1-model_v2 AlphaFold Q8R4Z1 1-411 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708485 AgrOrtholog
BioCyc Gene G2FUF-36398 BioCyc
Ensembl Genes ENSRNOG00000042634 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000012960 ENTREZGENE
Gene3D-CATH 2.30.39.10 UniProtKB/Swiss-Prot
  3.30.497.10 UniProtKB/Swiss-Prot
InterPro Serpin_dom UniProtKB/Swiss-Prot
  Serpin_fam UniProtKB/Swiss-Prot
  Serpin_sf UniProtKB/Swiss-Prot
  Serpin_sf_1 UniProtKB/Swiss-Prot
  Serpin_sf_2 UniProtKB/Swiss-Prot
NCBI Gene 191570 ENTREZGENE
PANTHER PTHR11461 UniProtKB/Swiss-Prot
  SERPIN A12 UniProtKB/Swiss-Prot
Pfam Serpin UniProtKB/Swiss-Prot
PhenoGen Serpina12 PhenoGen
PRINTS LEUSERPINII UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000042634 RatGTEx
SMART SERPIN UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56574 UniProtKB/Swiss-Prot
UniProt A6JEQ0 ENTREZGENE, UniProtKB/TrEMBL
  G3V782 ENTREZGENE, UniProtKB/TrEMBL
  Q8R4Z1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-13 Serpina12  serpin family A member 12  Serpina12  serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-16 Serpina12  serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12  Serpina12  serpin peptidase inhibitor, clade A, member 12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-03-05 Serpina12  serpin peptidase inhibitor, clade A, member 12  Serpina12  serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Serpina12  serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12    Serpina12  Name updated 1299863 APPROVED
2004-09-10 Serpina12  OL-64 protein  Ol64    Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in visceral white adipose tissue 1547845