Srcin1 (SRC kinase signaling inhibitor 1) - Rat Genome Database

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Gene: Srcin1 (SRC kinase signaling inhibitor 1) Rattus norvegicus
Analyze
Symbol: Srcin1
Name: SRC kinase signaling inhibitor 1
RGD ID: 708439
Description: Enables protein domain specific binding activity. Involved in negative regulation of protein secretion. Located in several cellular components, including filopodium; lamellipodium; and postsynaptic density. Is active in postsynapse and presynapse. Orthologous to human SRCIN1 (SRC kinase signaling inhibitor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: p130Cas-associated protein; P140; p140Cap; SNAP25-interacting protein; Snip
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81082,999,295 - 83,066,359 (-)NCBIGRCr8
mRatBN7.21082,502,911 - 82,569,882 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,504,393 - 82,571,040 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,450,806 - 87,517,832 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01086,948,895 - 87,015,919 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01082,341,448 - 82,408,479 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,460,059 - 85,517,671 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,460,059 - 85,517,683 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,248,782 - 85,306,191 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,263,255 - 86,320,681 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11086,277,624 - 86,335,044 (-)NCBI
Celera1081,269,056 - 81,325,146 (-)NCBICelera
Cytogenetic Map10q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (IBA,IDA,IEA,ISO)
axon  (IDA)
cytoplasm  (IBA,IEA,ISO,ISS)
dendrite  (IDA)
filopodium  (IDA)
focal adhesion  (ISO)
glutamatergic synapse  (IEA,ISO)
lamellipodium  (IDA)
neuronal cell body  (IDA)
postsynapse  (IDA)
postsynaptic density  (IBA,IDA,ISO)
presynapse  (IDA,ISO)
synapse  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. SNIP, a novel SNAP-25-interacting protein implicated in regulated exocytosis. Chin LS, etal., J Biol Chem 2000 Jan 14;275(2):1191-200.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Characterization of a multidomain adaptor protein, p140Cap, as part of a pre-synaptic complex. Ito H, etal., J Neurochem. 2008 Oct;107(1):61-72. doi: 10.1111/j.1471-4159.2008.05585.x. Epub 2008 Jul 24.
4. Dynamic microtubules regulate dendritic spine morphology and synaptic plasticity. Jaworski J, etal., Neuron. 2009 Jan 15;61(1):85-100. doi: 10.1016/j.neuron.2008.11.013.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14657239   PMID:14681019   PMID:17114649   PMID:17525734   PMID:21700703   PMID:21725361   PMID:22871113   PMID:23325552   PMID:24453341   PMID:28641114   PMID:29476059   PMID:30053369  
PMID:30315850  


Genomics

Comparative Map Data
Srcin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81082,999,295 - 83,066,359 (-)NCBIGRCr8
mRatBN7.21082,502,911 - 82,569,882 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,504,393 - 82,571,040 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,450,806 - 87,517,832 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01086,948,895 - 87,015,919 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01082,341,448 - 82,408,479 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,460,059 - 85,517,671 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,460,059 - 85,517,683 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,248,782 - 85,306,191 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,263,255 - 86,320,681 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11086,277,624 - 86,335,044 (-)NCBI
Celera1081,269,056 - 81,325,146 (-)NCBICelera
Cytogenetic Map10q31NCBI
SRCIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381738,530,031 - 38,607,025 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1738,530,031 - 38,605,952 (-)EnsemblGRCh38hg38GRCh38
GRCh371736,686,266 - 36,762,205 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361733,939,785 - 34,015,709 (-)NCBINCBI36Build 36hg18NCBI36
Celera1733,347,180 - 33,423,105 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1732,482,606 - 32,558,515 (-)NCBIHuRef
CHM1_11736,921,587 - 36,997,493 (-)NCBICHM1_1
T2T-CHM13v2.01739,393,085 - 39,470,208 (-)NCBIT2T-CHM13v2.0
Srcin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,400,166 - 97,466,059 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,400,166 - 97,467,012 (-)EnsemblGRCm39 Ensembl
GRCm381197,509,340 - 97,575,246 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,509,340 - 97,576,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv371197,370,654 - 97,436,440 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361197,327,759 - 97,391,216 (-)NCBIMGSCv36mm8
Celera11107,161,827 - 107,228,200 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.0NCBI
Srcin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,676,667 - 13,731,936 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,673,613 - 13,734,639 (-)NCBIChiLan1.0ChiLan1.0
SRCIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21926,343,010 - 26,418,881 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11728,226,559 - 28,302,458 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01718,666,094 - 18,742,015 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11718,942,084 - 19,015,753 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1718,942,084 - 19,015,744 (+)Ensemblpanpan1.1panPan2
SRCIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1923,597,561 - 23,667,846 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl923,597,734 - 23,667,851 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha923,068,049 - 23,137,611 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0924,393,637 - 24,463,203 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl924,394,360 - 24,461,549 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1923,164,781 - 23,234,322 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0923,425,852 - 23,495,385 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0923,552,336 - 23,621,944 (+)NCBIUU_Cfam_GSD_1.0
Srcin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560223,035,921 - 23,096,728 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649013,977,011 - 14,039,109 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649013,977,342 - 14,039,155 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRCIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,495,669 - 23,570,762 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,494,487 - 23,571,560 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21263,358,407 - 63,430,801 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRCIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11667,585,505 - 67,662,865 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1667,587,582 - 67,659,599 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607738,612,714 - 38,688,431 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srcin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247954,031,748 - 4,085,984 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247954,031,596 - 4,088,999 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Srcin1
283 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:261
Count of miRNA genes:159
Interacting mature miRNAs:191
Transcripts:ENSRNOT00000016070
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
724516Uae17Urinary albumin excretion QTL 173.6urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)107821062285220348Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2298481Eau9Experimental allergic uveoretinitis QTL 90.0169uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)106592723382565079Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)107889965587307728Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106134541382564856Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
2325836Bp346Blood pressure QTL 3460.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608584007272Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
12880053Cm104Cardiac mass QTL 1040.009heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)107345299283463334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
12880050Am10Aortic mass QTL 100.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)107437208484007272Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)107563188787055282Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)107981378985160854Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat

Markers in Region
D10Mgh5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21082,564,856 - 82,565,079 (+)MAPPERmRatBN7.2
Rnor_6.01085,513,822 - 85,514,044NCBIRnor6.0
Rnor_5.01085,302,342 - 85,302,564UniSTSRnor5.0
RGSC_v3.41086,316,831 - 86,317,054RGDRGSC3.4
RGSC_v3.41086,316,832 - 86,317,054UniSTSRGSC3.4
RGSC_v3.11086,331,202 - 86,331,424RGD
Celera1081,321,296 - 81,321,518UniSTS
RH 3.4 Map10793.19UniSTS
RH 3.4 Map10793.19RGD
RH 2.0 Map10954.1RGD
Cytogenetic Map10q31UniSTS
D10Rat144  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21082,538,790 - 82,538,938 (+)MAPPERmRatBN7.2
Rnor_6.01085,487,741 - 85,487,900NCBIRnor6.0
Rnor_5.01085,276,455 - 85,276,614UniSTSRnor5.0
RGSC_v3.41086,290,650 - 86,291,123RGDRGSC3.4
RGSC_v3.41086,290,714 - 86,290,861UniSTSRGSC3.4
RGSC_v3.11086,305,084 - 86,305,231RGD
Celera1081,295,669 - 81,295,816UniSTS
RH 3.4 Map10792.9RGD
RH 3.4 Map10792.9UniSTS
RH 2.0 Map10936.3RGD
SHRSP x BN Map1060.89RGD
Cytogenetic Map10q31UniSTS
D10Mco32  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21082,563,058 - 82,563,249 (+)MAPPERmRatBN7.2
Rnor_6.01085,512,024 - 85,512,214NCBIRnor6.0
Rnor_5.01085,300,544 - 85,300,734UniSTSRnor5.0
RGSC_v3.41086,315,033 - 86,315,224RGDRGSC3.4
RGSC_v3.41086,315,034 - 86,315,224UniSTSRGSC3.4
RGSC_v3.11086,329,403 - 86,329,594RGD
Celera1081,319,498 - 81,319,688UniSTS
Cytogenetic Map10q31UniSTS
D10Mco33  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21082,565,800 - 82,565,989 (+)MAPPERmRatBN7.2
Rnor_6.01085,514,766 - 85,514,954NCBIRnor6.0
Rnor_5.01085,303,286 - 85,303,474UniSTSRnor5.0
RGSC_v3.41086,317,776 - 86,317,964UniSTSRGSC3.4
Celera1081,322,240 - 81,322,428UniSTS
Cytogenetic Map10q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 68 4 17
Low 2 2 24 8 17 8 3 6 31 23 11
Below cutoff 1 41 19 19 19 8 8 1 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001393740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF156981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF156982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000016070   ⟹   ENSRNOP00000016070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1082,513,205 - 82,570,112 (-)Ensembl
Rnor_6.0 Ensembl1085,460,059 - 85,517,683 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095707   ⟹   ENSRNOP00000090918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1082,504,393 - 82,570,112 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099263   ⟹   ENSRNOP00000080321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1082,504,393 - 82,571,040 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108672   ⟹   ENSRNOP00000083677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1082,506,485 - 82,571,040 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109362   ⟹   ENSRNOP00000095793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1082,504,393 - 82,568,699 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112987   ⟹   ENSRNOP00000097620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1082,506,485 - 82,571,040 (-)Ensembl
RefSeq Acc Id: NM_001393740   ⟹   NP_001380669
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,066,262 (-)NCBI
mRatBN7.21082,502,911 - 82,569,882 (-)NCBI
RefSeq Acc Id: NM_001393741   ⟹   NP_001380670
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,086 (-)NCBI
mRatBN7.21082,502,911 - 82,568,706 (-)NCBI
RefSeq Acc Id: NM_019378   ⟹   NP_062251
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81083,006,588 - 83,065,086 (-)NCBI
mRatBN7.21082,510,205 - 82,568,706 (-)NCBI
Rnor_6.01085,460,059 - 85,517,671 (-)NCBI
Rnor_5.01085,248,782 - 85,306,191 (-)NCBI
RGSC_v3.41086,263,255 - 86,320,681 (-)RGD
Celera1081,269,056 - 81,325,146 (-)RGD
Sequence:
RefSeq Acc Id: XM_063269707   ⟹   XP_063125777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,192 (-)NCBI
RefSeq Acc Id: XM_063269708   ⟹   XP_063125778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,193 (-)NCBI
RefSeq Acc Id: XM_063269709   ⟹   XP_063125779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,192 (-)NCBI
RefSeq Acc Id: XM_063269710   ⟹   XP_063125780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,192 (-)NCBI
RefSeq Acc Id: XM_063269711   ⟹   XP_063125781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,192 (-)NCBI
RefSeq Acc Id: XM_063269712   ⟹   XP_063125782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,192 (-)NCBI
RefSeq Acc Id: XM_063269713   ⟹   XP_063125783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,192 (-)NCBI
RefSeq Acc Id: XM_063269714   ⟹   XP_063125784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,192 (-)NCBI
RefSeq Acc Id: XM_063269715   ⟹   XP_063125785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,038,656 (-)NCBI
RefSeq Acc Id: XM_063269716   ⟹   XP_063125786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,193 (-)NCBI
RefSeq Acc Id: XM_063269717   ⟹   XP_063125787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,038,656 (-)NCBI
RefSeq Acc Id: XM_063269718   ⟹   XP_063125788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,038,655 (-)NCBI
RefSeq Acc Id: XM_063269719   ⟹   XP_063125789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,066,359 (-)NCBI
RefSeq Acc Id: XM_063269720   ⟹   XP_063125790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,066,359 (-)NCBI
RefSeq Acc Id: XM_063269721   ⟹   XP_063125791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,039,124 (-)NCBI
RefSeq Acc Id: XM_063269722   ⟹   XP_063125792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,190 (-)NCBI
RefSeq Acc Id: XM_063269723   ⟹   XP_063125793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,190 (-)NCBI
RefSeq Acc Id: XM_063269724   ⟹   XP_063125794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,030,031 (-)NCBI
RefSeq Acc Id: XM_063269725   ⟹   XP_063125795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,030,032 (-)NCBI
RefSeq Acc Id: XM_063269726   ⟹   XP_063125796
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,189 (-)NCBI
RefSeq Acc Id: XM_063269727   ⟹   XP_063125797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,189 (-)NCBI
RefSeq Acc Id: XM_063269728   ⟹   XP_063125798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81083,010,117 - 83,065,191 (-)NCBI
RefSeq Acc Id: XM_063269729   ⟹   XP_063125799
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,189 (-)NCBI
RefSeq Acc Id: XM_063269730   ⟹   XP_063125800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,190 (-)NCBI
RefSeq Acc Id: XM_063269731   ⟹   XP_063125801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,065,188 (-)NCBI
RefSeq Acc Id: XM_063269732   ⟹   XP_063125802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,030,031 (-)NCBI
RefSeq Acc Id: XM_063269734   ⟹   XP_063125804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,030,031 (-)NCBI
RefSeq Acc Id: XM_063269735   ⟹   XP_063125805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,030,031 (-)NCBI
RefSeq Acc Id: XM_063269736   ⟹   XP_063125806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,999,295 - 83,030,031 (-)NCBI
RefSeq Acc Id: XR_010055230
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81083,010,123 - 83,065,191 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001380669 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380670 (Get FASTA)   NCBI Sequence Viewer  
  NP_062251 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125777 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125778 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125779 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125780 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125781 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125782 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125783 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125784 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125785 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125786 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125787 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125788 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125789 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125790 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125791 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125792 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125793 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125794 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125795 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125796 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125797 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125798 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125799 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125800 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125801 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125802 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125804 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125805 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125806 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF25003 (Get FASTA)   NCBI Sequence Viewer  
  AAF25004 (Get FASTA)   NCBI Sequence Viewer  
  EDM05860 (Get FASTA)   NCBI Sequence Viewer  
  EDM05861 (Get FASTA)   NCBI Sequence Viewer  
  EDM05862 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016070.5
  ENSRNOP00000080321.1
  ENSRNOP00000083677.1
  ENSRNOP00000090918
  ENSRNOP00000090918.1
  ENSRNOP00000095793
  ENSRNOP00000095793.1
  ENSRNOP00000097620.1
GenBank Protein Q9QXY2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_062251   ⟸   NM_019378
- Peptide Label: isoform 2
- UniProtKB: Q9QXY3 (UniProtKB/Swiss-Prot),   Q9QXY2 (UniProtKB/Swiss-Prot),   A6HIK6 (UniProtKB/TrEMBL),   A0A8I6AEP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016070   ⟸   ENSRNOT00000016070
RefSeq Acc Id: ENSRNOP00000097620   ⟸   ENSRNOT00000112987
RefSeq Acc Id: ENSRNOP00000083677   ⟸   ENSRNOT00000108672
RefSeq Acc Id: ENSRNOP00000090918   ⟸   ENSRNOT00000095707
RefSeq Acc Id: ENSRNOP00000095793   ⟸   ENSRNOT00000109362
RefSeq Acc Id: ENSRNOP00000080321   ⟸   ENSRNOT00000099263
RefSeq Acc Id: NP_001380669   ⟸   NM_001393740
- Peptide Label: isoform 1
- UniProtKB: A0A8I6AEP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380670   ⟸   NM_001393741
- Peptide Label: isoform 3
- UniProtKB: A6HIK5 (UniProtKB/TrEMBL),   A0A8I6AEP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125789   ⟸   XM_063269719
- Peptide Label: isoform X13
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125790   ⟸   XM_063269720
- Peptide Label: isoform X14
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125778   ⟸   XM_063269708
- Peptide Label: isoform X2
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125786   ⟸   XM_063269716
- Peptide Label: isoform X10
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125781   ⟸   XM_063269711
- Peptide Label: isoform X5
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125784   ⟸   XM_063269714
- Peptide Label: isoform X8
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125782   ⟸   XM_063269712
- Peptide Label: isoform X6
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125779   ⟸   XM_063269709
- Peptide Label: isoform X3
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125780   ⟸   XM_063269710
- Peptide Label: isoform X4
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125783   ⟸   XM_063269713
- Peptide Label: isoform X7
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125777   ⟸   XM_063269707
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125793   ⟸   XM_063269723
- Peptide Label: isoform X17
- UniProtKB: A0A8I6AEP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125800   ⟸   XM_063269730
- Peptide Label: isoform X24
- UniProtKB: A0A8I6AEP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125792   ⟸   XM_063269722
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AEP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125799   ⟸   XM_063269729
- Peptide Label: isoform X23
- UniProtKB: A0A8I6AEP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125797   ⟸   XM_063269727
- Peptide Label: isoform X21
- UniProtKB: A0A8I6AEP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125796   ⟸   XM_063269726
- Peptide Label: isoform X20
- UniProtKB: A0A8I6AEP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125801   ⟸   XM_063269731
- Peptide Label: isoform X25
- UniProtKB: A0A8I6AEP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125791   ⟸   XM_063269721
- Peptide Label: isoform X15
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125787   ⟸   XM_063269717
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZQE0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125785   ⟸   XM_063269715
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZQE0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125788   ⟸   XM_063269718
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZQE0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125795   ⟸   XM_063269725
- Peptide Label: isoform X19
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125806   ⟸   XM_063269736
- Peptide Label: isoform X29
- UniProtKB: A0A8I6AKG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125804   ⟸   XM_063269734
- Peptide Label: isoform X27
- UniProtKB: A0A8I6AKG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125805   ⟸   XM_063269735
- Peptide Label: isoform X28
- UniProtKB: A0A8I6AKG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125802   ⟸   XM_063269732
- Peptide Label: isoform X26
- UniProtKB: A0A8I6AKG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125794   ⟸   XM_063269724
- Peptide Label: isoform X18
- UniProtKB: A0A8L2Q7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125798   ⟸   XM_063269728
- Peptide Label: isoform X22
- UniProtKB: A0A8I6AEP4 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QXY2-F1-model_v2 AlphaFold Q9QXY2 1-1197 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708439 AgrOrtholog
BioCyc Gene G2FUF-23420 BioCyc
Ensembl Genes ENSRNOG00000011475 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016070.7 UniProtKB/TrEMBL
  ENSRNOT00000095707 ENTREZGENE
  ENSRNOT00000095707.1 UniProtKB/TrEMBL
  ENSRNOT00000099263.1 UniProtKB/TrEMBL
  ENSRNOT00000108672.1 UniProtKB/TrEMBL
  ENSRNOT00000109362 ENTREZGENE
  ENSRNOT00000109362.1 UniProtKB/TrEMBL
  ENSRNOT00000112987.1 UniProtKB/TrEMBL
Gene3D-CATH Actin interacting protein 3, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AIP3-like_C UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report rno:56029 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 56029 ENTREZGENE
PANTHER P140CAP/SNIP-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22741:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AIP3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Srcin1 PhenoGen
RatGTEx ENSRNOG00000011475 RatGTEx
UniProt A0A8I5ZQE0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZXP7_RAT UniProtKB/TrEMBL
  A0A8I6AEP4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKG9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATB3_RAT UniProtKB/TrEMBL
  A0A8L2Q7U5 ENTREZGENE, UniProtKB/TrEMBL
  A6HIK5 ENTREZGENE, UniProtKB/TrEMBL
  A6HIK6 ENTREZGENE, UniProtKB/TrEMBL
  Q9QXY2 ENTREZGENE
  Q9QXY3 ENTREZGENE
  SNIP_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q9QXY3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Srcin1  SRC kinase signaling inhibitor 1  Snip  SNAP25-interacting protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 Snip        Symbol and Name status set to provisional 70820 PROVISIONAL