Golgb1 (golgin B1) - Rat Genome Database

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Gene: Golgb1 (golgin B1) Rattus norvegicus
Analyze
Symbol: Golgb1
Name: golgin B1
RGD ID: 708429
Description: Involved in chondrocyte proliferation. Predicted to be located in Golgi apparatus. Predicted to be active in cis-Golgi network and endoplasmic reticulum-Golgi intermediate compartment. Used to study osteochondrodysplasia. Orthologous to human GOLGB1 (golgin B1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: golgi autoantigen, golgin subfamily b, macrogolgin 1; golgi-associated protein GCP360; golgin B1, golgi integral membrane protein; Golgin subfamily B member 1; LOC192243
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,348,573 - 77,406,165 (-)NCBIGRCr8
mRatBN7.21163,843,179 - 63,900,665 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,843,986 - 63,900,770 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1172,656,395 - 72,713,019 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,318,618 - 65,375,243 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,352,928 - 64,409,536 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,761,646 - 66,819,115 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,761,584 - 66,819,079 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,852,530 - 69,909,720 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41165,647,305 - 65,703,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11165,704,893 - 65,761,421 (-)NCBI
Celera1163,316,713 - 63,373,209 (-)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Insertional mutation in the Golgb1 gene is associated with osteochondrodysplasia and systemic edema in the OCD rat. Katayama K, etal., Bone. 2011 Nov;49(5):1027-36. doi: 10.1016/j.bone.2011.08.001. Epub 2011 Aug 7.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Information Derived from GenBank Report RGD, Sept. 2003
Additional References at PubMed
PMID:9260927   PMID:15308636   PMID:19946888   PMID:21795745   PMID:22572157   PMID:22658674   PMID:22792322   PMID:25205765   PMID:29577904   PMID:30453527  


Genomics

Comparative Map Data
Golgb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,348,573 - 77,406,165 (-)NCBIGRCr8
mRatBN7.21163,843,179 - 63,900,665 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,843,986 - 63,900,770 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1172,656,395 - 72,713,019 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,318,618 - 65,375,243 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,352,928 - 64,409,536 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,761,646 - 66,819,115 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,761,584 - 66,819,079 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,852,530 - 69,909,720 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41165,647,305 - 65,703,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11165,704,893 - 65,761,421 (-)NCBI
Celera1163,316,713 - 63,373,209 (-)NCBICelera
Cytogenetic Map11q21NCBI
GOLGB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383121,663,201 - 121,749,966 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3121,663,199 - 121,749,966 (-)EnsemblGRCh38hg38GRCh38
GRCh373121,382,048 - 121,468,588 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363122,864,738 - 122,951,292 (-)NCBINCBI36Build 36hg18NCBI36
Build 343122,865,639 - 122,951,292NCBI
Celera3119,792,012 - 119,878,526 (-)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3118,756,175 - 118,842,594 (-)NCBIHuRef
CHM1_13121,345,590 - 121,432,070 (-)NCBICHM1_1
T2T-CHM13v2.03124,383,093 - 124,471,671 (-)NCBIT2T-CHM13v2.0
Golgb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391636,695,455 - 36,753,447 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1636,695,502 - 36,753,447 (+)EnsemblGRCm39 Ensembl
GRCm381636,875,093 - 36,933,085 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1636,875,140 - 36,933,085 (+)EnsemblGRCm38mm10GRCm38
MGSCv371636,885,097 - 36,933,171 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361636,793,436 - 36,852,320 (+)NCBIMGSCv36mm8
Celera1637,295,881 - 37,343,987 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.19NCBI
Golgb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542721,021,894 - 21,105,049 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542721,022,369 - 21,108,448 (-)NCBIChiLan1.0ChiLan1.0
GOLGB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22119,620,315 - 119,710,409 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13119,625,092 - 119,715,193 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03118,765,467 - 118,852,005 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13125,673,966 - 125,760,826 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3125,673,966 - 125,760,584 (-)Ensemblpanpan1.1panPan2
GOLGB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13324,927,631 - 25,025,187 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3324,928,729 - 25,025,090 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3324,954,942 - 25,051,736 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03325,170,097 - 25,260,535 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3325,170,101 - 25,260,453 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13324,968,315 - 25,059,017 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03325,010,568 - 25,101,225 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03325,567,702 - 25,658,718 (-)NCBIUU_Cfam_GSD_1.0
Golgb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602129,372,227 - 129,436,201 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,085,777 - 8,149,986 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,085,805 - 8,149,764 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLGB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13138,754,789 - 138,847,245 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113138,754,803 - 138,847,254 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213148,381,843 - 148,474,839 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOLGB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12259,124,023 - 59,223,181 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2259,143,188 - 59,223,656 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041107,101,367 - 107,196,704 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Golgb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473126,455,126 - 26,526,316 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473126,438,529 - 26,526,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Golgb1
242 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:99
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000003255
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat

Markers in Region
BI284188  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21163,844,852 - 63,845,016 (+)MAPPERmRatBN7.2
Rnor_6.01166,763,316 - 66,763,479NCBIRnor6.0
Rnor_5.01169,854,200 - 69,854,363UniSTSRnor5.0
RGSC_v3.41165,648,172 - 65,648,335UniSTSRGSC3.4
Celera1163,317,580 - 63,317,743UniSTS
RH 3.4 Map11489.6UniSTS
Cytogenetic Map11q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 29 36 20 19 20 1 1 74 35 41 11 1
Low 14 21 21 21 7 10 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_138885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC108269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D25543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000003255   ⟹   ENSRNOP00000003255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1163,843,986 - 63,900,617 (-)Ensembl
Rnor_6.0 Ensembl1166,762,449 - 66,819,079 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083152   ⟹   ENSRNOP00000069873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1163,843,986 - 63,900,770 (-)Ensembl
Rnor_6.0 Ensembl1166,761,584 - 66,807,694 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106429   ⟹   ENSRNOP00000092634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1163,843,986 - 63,900,666 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110978   ⟹   ENSRNOP00000082110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1163,843,986 - 63,900,617 (-)Ensembl
RefSeq Acc Id: NM_138885   ⟹   NP_620240
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,349,376 - 77,406,006 (-)NCBI
mRatBN7.21163,843,986 - 63,900,617 (-)NCBI
Rnor_6.01166,762,449 - 66,819,079 (-)NCBI
Rnor_5.01169,852,530 - 69,909,720 (-)NCBI
RGSC_v3.41165,647,305 - 65,703,832 (-)RGD
Celera1163,316,713 - 63,373,209 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248379   ⟹   XP_006248441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,348,573 - 77,406,165 (-)NCBI
mRatBN7.21163,843,179 - 63,900,664 (-)NCBI
Rnor_6.01166,761,646 - 66,819,115 (-)NCBI
Rnor_5.01169,852,530 - 69,909,720 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248380   ⟹   XP_006248442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,348,573 - 77,406,081 (-)NCBI
mRatBN7.21163,843,179 - 63,900,656 (-)NCBI
Rnor_6.01166,761,646 - 66,819,095 (-)NCBI
Rnor_5.01169,852,530 - 69,909,720 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768699   ⟹   XP_008766921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,348,573 - 77,406,165 (-)NCBI
mRatBN7.21163,843,179 - 63,900,664 (-)NCBI
Rnor_6.01166,761,646 - 66,819,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768700   ⟹   XP_008766922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,348,573 - 77,406,165 (-)NCBI
mRatBN7.21163,843,179 - 63,900,664 (-)NCBI
Rnor_6.01166,761,646 - 66,819,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768703   ⟹   XP_008766925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,357,328 - 77,406,165 (-)NCBI
mRatBN7.21163,852,001 - 63,900,665 (-)NCBI
Rnor_6.01166,770,441 - 66,819,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597867   ⟹   XP_017453356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,348,573 - 77,406,165 (-)NCBI
mRatBN7.21163,843,179 - 63,900,663 (-)NCBI
Rnor_6.01166,761,646 - 66,819,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063270264   ⟹   XP_063126334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,348,573 - 77,406,046 (-)NCBI
RefSeq Acc Id: XM_063270265   ⟹   XP_063126335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,348,573 - 77,406,081 (-)NCBI
RefSeq Acc Id: XM_063270267   ⟹   XP_063126337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,348,573 - 77,406,046 (-)NCBI
RefSeq Acc Id: XM_063270268   ⟹   XP_063126338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,348,573 - 77,406,081 (-)NCBI
RefSeq Acc Id: XM_063270269   ⟹   XP_063126339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,348,573 - 77,406,081 (-)NCBI
RefSeq Acc Id: XM_063270270   ⟹   XP_063126340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81177,348,573 - 77,385,240 (-)NCBI
RefSeq Acc Id: NP_620240   ⟸   NM_138885
- UniProtKB: G3V6A8 (UniProtKB/TrEMBL),   A6IRA0 (UniProtKB/TrEMBL),   Q63714 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248441   ⟸   XM_006248379
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZUB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248442   ⟸   XM_006248380
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZUB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766922   ⟸   XM_008768700
- Peptide Label: isoform X3
- UniProtKB: Q63714 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766921   ⟸   XM_008768699
- Peptide Label: isoform X2
- UniProtKB: Q63714 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766925   ⟸   XM_008768703
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZUB6 (UniProtKB/TrEMBL),   Q63714 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453356   ⟸   XM_017597867
- Peptide Label: isoform X4
- UniProtKB: G3V6A8 (UniProtKB/TrEMBL),   A6IRA0 (UniProtKB/TrEMBL),   Q63714 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069873   ⟸   ENSRNOT00000083152
RefSeq Acc Id: ENSRNOP00000003255   ⟸   ENSRNOT00000003255
RefSeq Acc Id: ENSRNOP00000092634   ⟸   ENSRNOT00000106429
RefSeq Acc Id: ENSRNOP00000082110   ⟸   ENSRNOT00000110978
RefSeq Acc Id: XP_063126339   ⟸   XM_063270269
- Peptide Label: isoform X4
- UniProtKB: Q63714 (UniProtKB/TrEMBL),   A6IRA0 (UniProtKB/TrEMBL),   G3V6A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126338   ⟸   XM_063270268
- Peptide Label: isoform X3
- UniProtKB: Q63714 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126335   ⟸   XM_063270265
- Peptide Label: isoform X2
- UniProtKB: Q63714 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126337   ⟸   XM_063270267
- Peptide Label: isoform X3
- UniProtKB: Q63714 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126334   ⟸   XM_063270264
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZUB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126340   ⟸   XM_063270270
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AFX2 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698179
Promoter ID:EPDNEW_R8703
Type:initiation region
Name:Golgb1_1
Description:golgin B1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01166,819,107 - 66,819,167EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708429 AgrOrtholog
BioCyc Gene G2FUF-21245 BioCyc
Ensembl Genes ENSRNOG00000030314 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003255 ENTREZGENE
  ENSRNOT00000003255.5 UniProtKB/TrEMBL
  ENSRNOT00000083152.2 UniProtKB/TrEMBL
  ENSRNOT00000106429.1 UniProtKB/TrEMBL
  ENSRNOT00000110978.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
InterPro GOLGB1 UniProtKB/TrEMBL
KEGG Report rno:192243 UniProtKB/TrEMBL
NCBI Gene 192243 ENTREZGENE
PANTHER GOLGIN SUBFAMILY B MEMBER 1 UniProtKB/TrEMBL
  PTHR18887 UniProtKB/TrEMBL
PhenoGen Golgb1 PhenoGen
RatGTEx ENSRNOG00000030314 RatGTEx
Superfamily-SCOP Bacterial hemolysins UniProtKB/TrEMBL
  Tropomyosin UniProtKB/TrEMBL
UniProt A0A0G2JWG6_RAT UniProtKB/TrEMBL
  A0A8I5ZUB6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFX2 ENTREZGENE, UniProtKB/TrEMBL
  A6IRA0 ENTREZGENE, UniProtKB/TrEMBL
  A6IRA1_RAT UniProtKB/TrEMBL
  A6IRA2_RAT UniProtKB/TrEMBL
  A6IRA3_RAT UniProtKB/TrEMBL
  G3V6A8 ENTREZGENE, UniProtKB/TrEMBL
  Q63714 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Golgb1  golgin B1  Golgb1  golgin B1, golgi integral membrane protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Golgb1  golgi autoantigen, golgin subfamily b, macrogolgin 1  LOC192243  golgi-associated protein GCP360  Symbol and Name updated 1299863 APPROVED