Advanced Search (OLGA)

Gene: Erc2 (ELKS/RAB6-interacting/CAST family member 2) Rattus norvegicus

Analyze

Symbol:

Erc2

Name:

ELKS/RAB6-interacting/CAST family member 2

RGD ID:

708372

Description:

Enables PDZ domain binding activity. Involved in synapse organization. Located in several cellular components, including distal axon; presynaptic active zone; and presynaptic membrane. Part of protein-containing complex. Is active in presynaptic active zone cytoplasmic component. Orthologous to human ERC2 (ELKS/RAB6-interacting/CAST family member 2); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Cast; CAST1; CAZ-associated structural protein; CAZ-associated structural protein 1; Cmbp; cytomatrix protein p110; ERC protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	2,819,399 - 3,680,258 (+)	NCBI		GRCr8
mRatBN7.2	16	2,812,712 - 3,673,624 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	2,848,620 - 3,670,776 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	2,819,340 - 3,680,212 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	3,965,020 - 4,825,629 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	2,824,168 - 3,685,138 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	3,258,580 - 4,283,592 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	3,293,599 - 3,679,222 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	3,260,419 - 4,388,774 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	2,932,781 - 3,596,299 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	2,932,780 - 3,596,297 (+)	NCBI
Celera	16	2,811,369 - 3,459,316 (+)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Erc2	Rat	(+)-schisandrin B	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of ERC2 mRNA]	CTD	PMID:31150632
Erc2	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	RGD:1615655	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of ERC2 mRNA	CTD	PMID:36331819
Erc2	Rat	1,1-dichloroethene	decreases expression	ISO	RGD:1615655	6480464	vinylidene chloride results in decreased expression of ERC2 mRNA	CTD	PMID:26682919
Erc2	Rat	1,2-dichloroethane	increases expression	ISO	RGD:1615655	6480464	ethylene dichloride results in increased expression of ERC2 mRNA	CTD	PMID:28960355
Erc2	Rat	17beta-estradiol	multiple interactions	ISO	RGD:1607056	6480464	[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of ERC2 mRNA	CTD	PMID:19619570
Erc2	Rat	17beta-estradiol	increases expression	ISO	RGD:1607056	6480464	Estradiol results in increased expression of ERC2 mRNA	CTD	PMID:19619570
Erc2	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	RGD:1607056	6480464	[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of ERC2 mRNA	CTD	PMID:19619570
Erc2	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of ERC2 mRNA	CTD	PMID:32109520
Erc2	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	RGD:1607056	6480464	Tetrachlorodibenzodioxin results in increased expression of ERC2 mRNA	CTD	PMID:19619570
Erc2	Rat	2,6-dimethoxyphenol	multiple interactions	ISO	RGD:1607056	6480464	[pyrogallol 1,3-dimethyl ether co-treated with Furaldehyde] results in decreased expression of and affects the localization more ...	CTD	PMID:38598786
Erc2	Rat	3,4-methylenedioxymethamphetamine	increases expression	ISO	RGD:1615655	6480464	N-Methyl-3,4-methylenedioxyamphetamine results in increased expression of ERC2 mRNA	CTD	PMID:20188158
Erc2	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	RGD:1615655	6480464	bisphenol S results in decreased expression of ERC2 mRNA	CTD	PMID:39298647
Erc2	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	RGD:1615655	6480464	bisphenol S affects the methylation of ERC2 gene	CTD	PMID:31683443
Erc2	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of ERC2 mRNA	CTD	PMID:24780913\|PMID:36843608
Erc2	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of ERC2 mRNA	CTD	PMID:30047161
Erc2	Rat	aflatoxin B1	decreases expression	ISO	RGD:1615655	6480464	Aflatoxin B1 results in decreased expression of ERC2 mRNA	CTD	PMID:19770486
Erc2	Rat	aflatoxin B1	increases methylation	ISO	RGD:1607056	6480464	Aflatoxin B1 results in increased methylation of ERC2 intron	CTD	PMID:30157460
Erc2	Rat	aflatoxin B1	decreases expression	ISO	RGD:1607056	6480464	Aflatoxin B1 results in decreased expression of ERC2 mRNA	CTD	PMID:22100608
Erc2	Rat	Aflatoxin B2 alpha	increases methylation	ISO	RGD:1607056	6480464	aflatoxin B2 results in increased methylation of ERC2 intron	CTD	PMID:30157460
Erc2	Rat	allethrin	multiple interactions	EXP		6480464	[cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in more ...	CTD	PMID:34896426
Erc2	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of ERC2 mRNA	CTD	PMID:30047161
Erc2	Rat	arsane	increases methylation	ISO	RGD:1607056	6480464	Arsenic results in increased methylation of ERC2 gene	CTD	PMID:24525453
Erc2	Rat	arsane	decreases methylation	ISO	RGD:1607056	6480464	Arsenic results in decreased methylation of ERC2 3' UTR	CTD	PMID:31135185
Erc2	Rat	arsane	affects methylation	ISO	RGD:1607056	6480464	Arsenic affects the methylation of ERC2 gene	CTD	PMID:25304211
Erc2	Rat	arsenic atom	increases methylation	ISO	RGD:1607056	6480464	Arsenic results in increased methylation of ERC2 gene	CTD	PMID:24525453
Erc2	Rat	arsenic atom	decreases methylation	ISO	RGD:1607056	6480464	Arsenic results in decreased methylation of ERC2 3' UTR	CTD	PMID:31135185
Erc2	Rat	arsenic atom	affects methylation	ISO	RGD:1607056	6480464	Arsenic affects the methylation of ERC2 gene	CTD	PMID:25304211
Erc2	Rat	arsenite(3-)	increases methylation	ISO	RGD:1607056	6480464	arsenite results in increased methylation of ERC2 promoter	CTD	PMID:23974009
Erc2	Rat	arsenous acid	increases expression	ISO	RGD:1607056	6480464	Arsenic Trioxide results in increased expression of ERC2 mRNA	CTD	PMID:15761015
Erc2	Rat	benzo[a]pyrene	decreases expression	ISO	RGD:1615655	6480464	Benzo(a)pyrene results in decreased expression of ERC2 mRNA	CTD	PMID:19770486\|PMID:21715664
Erc2	Rat	benzo[a]pyrene	increases methylation	ISO	RGD:1607056	6480464	Benzo(a)pyrene results in increased methylation of ERC2 exon; Benzo(a)pyrene results in increased methylation of ERC2 more ...	CTD	PMID:27901495
Erc2	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1607056	6480464	Benzo(a)pyrene affects the methylation of ERC2 3' UTR; Benzo(a)pyrene affects the methylation of ERC2 5' more ...	CTD	PMID:27901495\|PMID:30157460
Erc2	Rat	benzo[a]pyrene	affects expression	ISO	RGD:1607056	6480464	Benzo(a)pyrene affects the expression of ERC2 mRNA	CTD	PMID:21714911
Erc2	Rat	benzo[e]pyrene	increases methylation	ISO	RGD:1607056	6480464	benzo(e)pyrene results in increased methylation of ERC2 intron	CTD	PMID:30157460
Erc2	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of ERC2 mRNA	CTD	PMID:25181051
Erc2	Rat	bisphenol A	decreases expression	ISO	RGD:1615655	6480464	bisphenol A results in decreased expression of ERC2 mRNA	CTD	PMID:32156529
Erc2	Rat	bisphenol A	decreases methylation	ISO	RGD:1607056	6480464	bisphenol A results in decreased methylation of ERC2 gene	CTD	PMID:31601247
Erc2	Rat	bisphenol A	affects methylation	ISO	RGD:1607056	6480464	bisphenol A affects the methylation of ERC2 gene	CTD	PMID:33391824
Erc2	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of ERC2 gene	CTD	PMID:28505145
Erc2	Rat	cadmium dichloride	increases expression	ISO	RGD:1607056	6480464	Cadmium Chloride results in increased expression of ERC2 mRNA	CTD	PMID:38568856
Erc2	Rat	carbon nanotube	decreases expression	ISO	RGD:1615655	6480464	Nanotubes, Carbon analog results in decreased expression of ERC2 mRNA; Nanotubes, Carbon results in decreased more ...	CTD	PMID:25620056
Erc2	Rat	CGP 52608	multiple interactions	ISO	RGD:1607056	6480464	CGP 52608 promotes the reaction [RORA protein binds to ERC2 gene]	CTD	PMID:28238834
Erc2	Rat	cisplatin	decreases expression	ISO	RGD:1615655	6480464	Cisplatin results in decreased expression of ERC2 mRNA	CTD	PMID:25270620
Erc2	Rat	cyhalothrin	multiple interactions	EXP		6480464	[cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in more ...	CTD	PMID:34896426
Erc2	Rat	cypermethrin	multiple interactions	EXP		6480464	[cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in more ...	CTD	PMID:34896426
Erc2	Rat	diarsenic trioxide	increases expression	ISO	RGD:1607056	6480464	Arsenic Trioxide results in increased expression of ERC2 mRNA	CTD	PMID:15761015
Erc2	Rat	dibutyl phthalate	decreases expression	ISO	RGD:1615655	6480464	Dibutyl Phthalate results in decreased expression of ERC2 mRNA	CTD	PMID:21266533
Erc2	Rat	dorsomorphin	multiple interactions	ISO	RGD:1607056	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Erc2	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of ERC2 mRNA	CTD	PMID:29391264
Erc2	Rat	ethanol	decreases expression	ISO	RGD:1615655	6480464	Ethanol results in decreased expression of ERC2 mRNA	CTD	PMID:19167417
Erc2	Rat	fenvalerate	multiple interactions	EXP		6480464	[cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in more ...	CTD	PMID:34896426
Erc2	Rat	folic acid	decreases expression	ISO	RGD:1615655	6480464	Folic Acid results in decreased expression of ERC2 mRNA	CTD	PMID:25629700
Erc2	Rat	fonofos	increases methylation	ISO	RGD:1607056	6480464	Fonofos results in increased methylation of ERC2 promoter	CTD	PMID:22847954
Erc2	Rat	furfural	multiple interactions	ISO	RGD:1607056	6480464	[pyrogallol 1,3-dimethyl ether co-treated with Furaldehyde] results in decreased expression of and affects the localization more ...	CTD	PMID:38598786
Erc2	Rat	iron dichloride	increases expression	ISO	RGD:1607056	6480464	ferrous chloride results in increased expression of ERC2 mRNA	CTD	PMID:35984750
Erc2	Rat	lipopolysaccharide	increases expression	ISO	RGD:1607056	6480464	Lipopolysaccharides results in increased expression of ERC2 mRNA	CTD	PMID:35811015
Erc2	Rat	lipopolysaccharide	multiple interactions	ISO	RGD:1607056	6480464	[S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of ERC2 mRNA; [S-(1,2-dichlorovinyl)cysteine more ...	CTD	PMID:35811015
Erc2	Rat	methapyrilene	increases methylation	ISO	RGD:1607056	6480464	Methapyrilene results in increased methylation of ERC2 intron	CTD	PMID:30157460
Erc2	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of ERC2 mRNA	CTD	PMID:30047161
Erc2	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of ERC2 gene	CTD	PMID:35440735
Erc2	Rat	mitomycin C	decreases expression	ISO	RGD:1615655	6480464	Mitomycin results in decreased expression of ERC2 mRNA	CTD	PMID:25270620
Erc2	Rat	N,N-diethyl-m-toluamide	multiple interactions	EXP		6480464	[Permethrin co-treated with DEET] results in increased methylation of ERC2 gene	CTD	PMID:33148267
Erc2	Rat	N-nitrosomorpholine	increases expression	EXP		6480464	N-nitrosomorpholine results in increased expression of ERC2 protein	CTD	PMID:19716841
Erc2	Rat	paracetamol	increases expression	ISO	RGD:1607056	6480464	Acetaminophen results in increased expression of ERC2 mRNA	CTD	PMID:29067470
Erc2	Rat	parathion	increases methylation	ISO	RGD:1607056	6480464	Parathion results in increased methylation of ERC2 promoter	CTD	PMID:22847954
Erc2	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	RGD:1615655	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of ERC2 mRNA; [perfluorooctane sulfonic more ...	CTD	PMID:36331819
Erc2	Rat	permethrin	multiple interactions	EXP		6480464	[Permethrin co-treated with DEET] results in increased methylation of ERC2 gene	CTD	PMID:33148267
Erc2	Rat	phenobarbital	affects expression	ISO	RGD:1615655	6480464	Phenobarbital affects the expression of ERC2 mRNA	CTD	PMID:23091169
Erc2	Rat	pirinixic acid	multiple interactions	ISO	RGD:1615655	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in more ...	CTD	PMID:19710929
Erc2	Rat	pirinixic acid	increases expression	ISO	RGD:1615655	6480464	pirinixic acid results in increased expression of ERC2 mRNA	CTD	PMID:18301758\|PMID:20813756
Erc2	Rat	potassium dichromate	decreases expression	ISO	RGD:1615655	6480464	Potassium Dichromate results in decreased expression of ERC2 mRNA	CTD	PMID:23608068
Erc2	Rat	progesterone	increases expression	ISO	RGD:1615655	6480464	Progesterone results in increased expression of ERC2 mRNA	CTD	PMID:22238285
Erc2	Rat	propiconazole	decreases expression	EXP		6480464	propiconazole results in decreased expression of ERC2 mRNA	CTD	PMID:30047161
Erc2	Rat	pyrethrins	decreases expression	EXP		6480464	Pyrethrins results in decreased expression of ERC2 protein	CTD	PMID:34896426
Erc2	Rat	resveratrol	decreases phosphorylation	ISO	RGD:1607056	6480464	resveratrol results in decreased phosphorylation of ERC2 protein	CTD	PMID:25311616
Erc2	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	RGD:1607056	6480464	[S-(1,2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of ERC2 mRNA; [S-(1,2-dichlorovinyl)cysteine more ...	CTD	PMID:35811015
Erc2	Rat	SB 431542	multiple interactions	ISO	RGD:1607056	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Erc2	Rat	serpentine asbestos	decreases methylation	ISO	RGD:1607056	6480464	Asbestos, Serpentine results in decreased methylation of ERC2 3' UTR	CTD	PMID:29523930
Erc2	Rat	sodium arsenite	increases expression	ISO	RGD:1607056	6480464	sodium arsenite results in increased expression of ERC2 mRNA	CTD	PMID:38568856
Erc2	Rat	sodium chloride	multiple interactions	ISO	RGD:1607056	6480464	[Sodium Chloride co-treated with Furaldehyde] results in decreased expression of and affects the localization of more ...	CTD	PMID:38598786
Erc2	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of ERC2 mRNA	CTD	PMID:30047161
Erc2	Rat	terbufos	increases methylation	ISO	RGD:1607056	6480464	terbufos results in increased methylation of ERC2 promoter	CTD	PMID:22847954
Erc2	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of ERC2 mRNA	CTD	PMID:31150632
Erc2	Rat	tetrachloromethane	decreases expression	ISO	RGD:1615655	6480464	Carbon Tetrachloride results in decreased expression of ERC2 mRNA	CTD	PMID:31919559
Erc2	Rat	tetrachloromethane	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of ERC2 mRNA]	CTD	PMID:31150632
Erc2	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of ERC2 mRNA	CTD	PMID:23411599
Erc2	Rat	titanium dioxide	increases methylation	ISO	RGD:1615655	6480464	titanium dioxide results in increased methylation of ERC2 gene	CTD	PMID:35295148
Erc2	Rat	titanium dioxide	decreases methylation	ISO	RGD:1615655	6480464	titanium dioxide results in decreased methylation of ERC2 gene	CTD	PMID:35295148
Erc2	Rat	trichostatin A	decreases expression	ISO	RGD:1607056	6480464	trichostatin A results in decreased expression of ERC2 mRNA	CTD	PMID:24935251\|PMID:26272509\|PMID:26705709
Erc2	Rat	trichostatin A	multiple interactions	ISO	RGD:1607056	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Erc2	Rat	valproic acid	decreases methylation	ISO	RGD:1607056	6480464	Valproic Acid results in decreased methylation of ERC2 gene	CTD	PMID:29154799
Erc2	Rat	valproic acid	affects expression	ISO	RGD:1607056	6480464	Valproic Acid affects the expression of ERC2 mRNA	CTD	PMID:25979313
Erc2	Rat	vinclozolin	increases expression	EXP		6480464	vinclozolin results in increased expression of ERC2 mRNA	CTD	PMID:23869203

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Erc2	Rat	maintenance of presynaptic active zone structure	involved_in	IEA	GO:0098882	1600115	GO_REF:0000108	GOC	GO_REF:0000108
Erc2	Rat	maintenance of presynaptic active zone structure	involved_in	IBA	FB:FBgn0259246\|PANTHER:PTN000429274	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Erc2	Rat	regulation of calcium-dependent activation of synaptic vesicle fusion	involved_in	IEA	UniProtKB:Q6PH08\|ensembl:ENSMUSP00000147886	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Erc2	Rat	regulation of calcium-dependent activation of synaptic vesicle fusion	involved_in	ISO	RGD:1615655	1624291	PMID:25209271	RGD	PMID:25209271
Erc2	Rat	regulation of presynaptic cytosolic calcium ion concentration	involved_in	ISO	RGD:1615655	1624291	PMID:25209271	RGD	PMID:25209271
Erc2	Rat	regulation of presynaptic cytosolic calcium ion concentration	involved_in	IEA	UniProtKB:Q6PH08\|ensembl:ENSMUSP00000147886	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Erc2	Rat	synapse assembly	involved_in	NAS		1299401	PMID:12163476	UniProt
Erc2	Rat	synapse organization		IEP		1299401		RGD
Erc2	Rat	synaptic vesicle priming	involved_in	ISO	RGD:1615655	1624291	PMID:19874790, PMID:27253063	RGD	PMID:19874790\|PMID:27253063
Erc2	Rat	synaptic vesicle priming	involved_in	IEA	UniProtKB:Q6PH08\|ensembl:ENSMUSP00000147886	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Erc2	Rat	cell projection	located_in	IEA	UniProtKB-KW:KW-0966	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Erc2	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Erc2	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Erc2	Rat	cytoskeleton	located_in	IEA	UniProtKB-SubCell:SL-0090	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Erc2	Rat	cytoskeleton	located_in	IEA	UniProtKB-KW:KW-0206	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Erc2	Rat	endoplasmic reticulum	located_in	NAS		1299402	PMID:12923177	UniProt
Erc2	Rat	GABA-ergic synapse	is_active_in	ISO	RGD:1615655	1624291	PMID:19874790, PMID:25209271	RGD	PMID:19874790\|PMID:25209271
Erc2	Rat	GABA-ergic synapse	is_active_in	IEA	UniProtKB:Q6PH08\|ensembl:ENSMUSP00000147886	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Erc2	Rat	glutamatergic synapse	is_active_in	IEA	UniProtKB:Q6PH08\|ensembl:ENSMUSP00000147886	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Erc2	Rat	glutamatergic synapse	is_active_in	ISO	RGD:1615655	1624291	PMID:27253063, PMID:29439199	RGD	PMID:27253063\|PMID:29439199
Erc2	Rat	Golgi-associated vesicle	located_in	IDA		14390063	PMID:22875941	UniProt
Erc2	Rat	growth cone	located_in	IDA		1299401	PMID:12163476	UniProt
Erc2	Rat	neuronal cell body		IDA		1299401		RGD
Erc2	Rat	presynapse	located_in	IEA	ARBA:ARBA00028835	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Erc2	Rat	presynapse	located_in	IEA	UniProtKB-SubCell:SL-0516	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Erc2	Rat	presynaptic active zone	located_in	IDA		14390063	PMID:22875941	UniProt
Erc2	Rat	presynaptic active zone	located_in	IEA	UniProtKB-SubCell:SL-0519	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Erc2	Rat	presynaptic active zone cytoplasmic component	is_active_in	IDA		632516	PMID:12391317	SynGO
Erc2	Rat	presynaptic active zone cytoplasmic component	is_active_in	ISO	RGD:1615655	1624291	PMID:29439199	RGD	PMID:29439199
Erc2	Rat	presynaptic active zone cytoplasmic component	is_active_in	IEA	UniProtKB:Q6PH08\|ensembl:ENSMUSP00000147886	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Erc2	Rat	presynaptic active zone cytoplasmic component	is_active_in	IBA	FB:FBgn0259246\|MGI:1098749\|PANTHER:PTN000429274\|RGD:628733\|RGD:708372	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Erc2	Rat	presynaptic membrane	located_in	IDA		1299401	PMID:12163476	UniProt
Erc2	Rat	protein-containing complex		IDA		1299401		RGD
Erc2	Rat	synapse	located_in	ISO	RGD:1615655	1624291	PMID:23791195	RGD	PMID:23791195
Erc2	Rat	synapse	located_in	IEA	UniProtKB:Q6PH08\|ensembl:ENSMUSP00000147886	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Erc2	Rat	synapse	located_in	IEA	UniProtKB-SubCell:SL-0258	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Erc2	Rat	synapse	located_in	TAS		1299401	PMID:12163476	UniProt
Erc2	Rat	synapse	located_in	IEA	UniProtKB-KW:KW-0770	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Erc2	Rat	terminal bouton		IDA		1299401		RGD

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Erc2	Rat	PDZ domain binding		IPI	RGD:620000	1299401		RGD
Erc2	Rat	PDZ domain binding	enables	NAS		1299401	PMID:12163476	UniProt
Erc2	Rat	protein binding		IPI	RGD:2223	1299401		RGD
Erc2	Rat	protein binding	enables	ISO	RGD:1615655	1624291	MGI:1924750\|PR:B8QI36\|PR:Q8BSS9 PMID:23791195	RGD	PMID:23791195
Erc2	Rat	protein binding	enables	ISO	RGD:1607056	1624291	UniProtKB:O75145\|UniProtKB:O75334\|UniProtKB:O75335\|UniProtKB:P10242\|UniProtKB:Q13136 PMID:12923177, PMID:20195357	RGD	PMID:12923177\|PMID:20195357
Erc2	Rat	protein binding	enables	IPI	UniProtKB:Q9JIR4	1299401	PMID:12163476	UniProt
Erc2	Rat	protein-containing complex binding		IDA		1299401		RGD
Erc2	Rat	structural constituent of presynaptic active zone	enables	IBA	MGI:1098749\|MGI:2151013\|PANTHER:PTN000429274	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Erc2	Rat	structural constituent of presynaptic active zone	enables	IEA	UniProtKB:Q6PH08\|ensembl:ENSMUSP00000147886	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Erc2	Rat	structural constituent of presynaptic active zone	enables	ISO	RGD:1615655	1624291	PMID:27537483	RGD	PMID:27537483

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dimethoxyphenol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

allethrin (EXP)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

fonofos (ISO)

furfural (ISO)

iron dichloride (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methimazole (EXP)

methoxychlor (EXP)

mitomycin C (ISO)

N,N-diethyl-m-toluamide (EXP)

N-nitrosomorpholine (EXP)

paracetamol (ISO)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

progesterone (ISO)

propiconazole (EXP)

pyrethrins (EXP)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sulfadimethoxine (EXP)

terbufos (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

maintenance of presynaptic active zone structure (IBA,IEA)

regulation of calcium-dependent activation of synaptic vesicle fusion (IEA,ISO)

regulation of presynaptic cytosolic calcium ion concentration (IEA,ISO)

synapse assembly (NAS)

synapse organization (IEP)

synaptic vesicle priming (IEA,ISO)

Cellular Component

cell projection (IEA)

cytoplasm (IEA)

cytoskeleton (IEA)

endoplasmic reticulum (NAS)

GABA-ergic synapse (IEA,ISO)

glutamatergic synapse (IEA,ISO)

Golgi-associated vesicle (IDA)

growth cone (IDA)

neuronal cell body (IDA)

presynapse (IEA)

presynaptic active zone (IDA,IEA)

presynaptic active zone cytoplasmic component (IBA,IDA,IEA,ISO)

presynaptic membrane (IDA)

protein-containing complex (IDA)

synapse (IEA,ISO,TAS)

terminal bouton (IDA)

Molecular Function

PDZ domain binding (IPI,NAS)

protein binding (IPI,ISO)

protein-containing complex binding (IDA)

structural constituent of presynaptic active zone (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Interaction of the ERC family of RIM-binding proteins with the liprin-alpha family of multidomain proteins.	Ko J, etal., J Biol Chem 2003 Oct 24;278(43):42377-85. Epub 2003 Aug 15.
3.	Formation of Golgi-derived active zone precursor vesicles.	Maas C, etal., J Neurosci. 2012 Aug 8;32(32):11095-108. doi: 10.1523/JNEUROSCI.0195-12.2012.
4.	Cast: a novel protein of the cytomatrix at the active zone of synapses that forms a ternary complex with RIM1 and munc13-1.	Ohtsuka T, etal., J Cell Biol 2002 Aug 5;158(3):577-90. Epub 2002 Aug 5.
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	A family of RIM-binding proteins regulated by alternative splicing: Implications for the genesis of synaptic active zones.	Wang Y, etal., Proc Natl Acad Sci U S A 2002 Oct 29;99(22):14464-9.

Additional References at PubMed

PMID:14723704	PMID:14734538	PMID:16421316	PMID:19874790	PMID:21700703	PMID:23791195	PMID:27537483	PMID:28264913	PMID:29439199	PMID:36555116

Genomics

Comparative Map Data

Erc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	2,819,399 - 3,680,258 (+)	NCBI		GRCr8
mRatBN7.2	16	2,812,712 - 3,673,624 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	2,848,620 - 3,670,776 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	2,819,340 - 3,680,212 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	3,965,020 - 4,825,629 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	2,824,168 - 3,685,138 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	3,258,580 - 4,283,592 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	3,293,599 - 3,679,222 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	3,260,419 - 4,388,774 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	2,932,781 - 3,596,299 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	2,932,780 - 3,596,297 (+)	NCBI
Celera	16	2,811,369 - 3,459,316 (+)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

ERC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	55,508,311 - 56,468,467 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	55,508,311 - 56,469,095 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	55,542,339 - 56,502,495 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	55,517,376 - 56,477,431 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	55,509,269 - 56,468,649 (-)	NCBI		Celera
Cytogenetic Map	3	p14.3	NCBI
HuRef	3	55,591,133 - 56,551,243 (-)	NCBI		HuRef
CHM1_1	3	55,493,671 - 56,453,566 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	55,542,510 - 56,508,891 (-)	NCBI		T2T-CHM13v2.0

Erc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	27,344,232 - 28,200,494 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	27,344,385 - 28,200,494 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	27,622,275 - 28,478,537 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	27,622,428 - 28,478,537 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	28,435,628 - 29,291,723 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	26,449,326 - 27,305,403 (+)	NCBI		MGSCv36	mm8
Celera	14	23,854,528 - 24,727,160 (+)	NCBI		Celera
Cytogenetic Map	14	A3	NCBI
cM Map	14	16.51	NCBI

Erc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	5,513,662 - 6,308,882 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	5,345,191 - 6,308,909 (-)	NCBI	ChiLan1.0	ChiLan1.0

ERC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	55,491,457 - 56,468,006 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	55,496,228 - 56,472,777 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	55,438,875 - 56,417,072 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	56,659,377 - 57,599,384 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	56,836,941 - 57,599,248 (-)	Ensembl	panpan1.1		panPan2

ERC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	33,842,753 - 34,748,038 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	33,842,753 - 34,746,491 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	33,769,262 - 34,672,553 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	34,114,565 - 35,020,292 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	34,114,216 - 35,020,299 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	33,558,663 - 34,463,362 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	33,918,155 - 34,823,551 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	34,092,812 - 35,039,347 (+)	NCBI		UU_Cfam_GSD_1.0

Erc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	172,937,212 - 173,811,690 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	6,075,769 - 6,950,263 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	6,075,811 - 6,532,671 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ERC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	37,388,517 - 38,367,504 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	37,388,513 - 38,367,512 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	41,281,049 - 41,624,117 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ERC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	16,851,862 - 17,817,504 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	17,034,445 - 17,817,522 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	149,054,724 - 150,028,608 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Erc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624822	756,550 - 1,807,175 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624822	756,532 - 1,806,129 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Erc2
5786 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	180
Count of miRNA genes:	73
Interacting mature miRNAs:	78
Transcripts:	ENSRNOT00000020427, ENSRNOT00000047118
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
1549842	Bp248	Blood pressure QTL 248		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	380245	2995463	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	9639137	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
12903952	Cm117	Cardiac mass QTL 117		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	16	832380	2995225	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
12903954	Bw186	Body weight QTL 186		0.011	body mass (VT:0001259)	body weight (CMO:0000012)	16	832380	2995225	Rat
12903955	Kidm69	Kidney mass QTL 69		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	832380	4227609	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
12903278	Am16	Aortic mass QTL 16		0.019	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	16	832380	2995225	Rat
12903279	Cm115	Cardiac mass QTL 115		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	16	832380	2995225	Rat
2325838	Bp347	Blood pressure QTL 347		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	1	3080679	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
12903281	Cm116	Cardiac mass QTL 116		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	16	832380	2995225	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	2851709	15884239	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat
2301404	Bp321	Blood pressure QTL 321		0.05	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	832380	2995225	Rat

Markers in Region

D16Rat22

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	3,460,296 - 3,460,473 (+)	Marker Load Pipeline
mRatBN7.2	16	3,453,660 - 3,453,842 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	4,209,654 - 4,209,831	NCBI	Rnor6.0
Rnor_5.0	16	4,155,704 - 4,155,881	UniSTS	Rnor5.0
RGSC_v3.4	16	3,537,909 - 3,538,086	UniSTS	RGSC3.4
RGSC_v3.4	16	3,537,908 - 3,538,086	RGD	RGSC3.4
RGSC_v3.1	16	3,537,906 - 3,538,084	RGD
Celera	16	3,401,210 - 3,401,387	UniSTS
RH 3.4 Map	16	10.5	RGD
RH 3.4 Map	16	10.5	UniSTS
RH 2.0 Map	17	225.3	RGD
FHH x ACI Map	16	2.07	RGD
Cytogenetic Map	16	p16	UniSTS

D16Rat51

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	3,397,943 - 3,398,165 (+)	Marker Load Pipeline
mRatBN7.2	16	3,391,305 - 3,391,527 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	4,147,508 - 4,147,729	NCBI	Rnor6.0
Rnor_5.0	16	4,093,805 - 4,094,026	UniSTS	Rnor5.0
RGSC_v3.4	16	3,476,196 - 3,476,417	UniSTS	RGSC3.4
RGSC_v3.4	16	3,476,195 - 3,476,417	RGD	RGSC3.4
RGSC_v3.1	16	3,476,194 - 3,476,415	RGD
Celera	16	3,338,671 - 3,338,892	UniSTS
RH 3.4 Map	16	8.6	RGD
RH 3.4 Map	16	8.6	UniSTS
RH 2.0 Map	16	0.0	RGD
FHH x ACI Map	16	1.9999	RGD
Cytogenetic Map	16	p16	UniSTS

D16Rat87

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	3,386,790 - 3,387,003 (+)	Marker Load Pipeline
mRatBN7.2	16	3,380,150 - 3,380,363 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	4,136,355 - 4,136,567	NCBI	Rnor6.0
Rnor_5.0	16	4,082,652 - 4,082,864	UniSTS	Rnor5.0
RGSC_v3.4	16	3,465,043 - 3,465,255	UniSTS	RGSC3.4
RGSC_v3.4	16	3,464,719 - 3,465,256	RGD	RGSC3.4
RGSC_v3.1	16	3,465,041 - 3,465,253	RGD
Celera	16	3,327,539 - 3,327,727	UniSTS
RH 3.4 Map	16	8.8	RGD
RH 3.4 Map	16	8.8	UniSTS
SHRSP x BN Map	16	0.0	UniSTS
SHRSP x BN Map	16	0.0	RGD
Cytogenetic Map	16	p16	UniSTS

D16Got3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	3,447,063 - 3,447,332 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	4,203,104 - 4,203,372	NCBI	Rnor6.0
Rnor_5.0	16	4,149,154 - 4,149,422	UniSTS	Rnor5.0
RGSC_v3.4	16	3,531,459 - 3,531,727	UniSTS	RGSC3.4
RGSC_v3.4	16	3,531,458 - 3,531,727	RGD	RGSC3.4
RGSC_v3.1	16	3,531,457 - 3,531,725	RGD
Celera	16	3,394,651 - 3,394,919	UniSTS
RH 3.4 Map	16	13.6	UniSTS
RH 3.4 Map	16	13.6	RGD
RH 2.0 Map	16	0.0	RGD
Cytogenetic Map	16	p16	UniSTS

D16Got6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,577,486 - 1,577,609 (-)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,747,405 - 3,747,527	NCBI	Rnor6.0
Rnor_5.0	16	3,713,387 - 3,713,509	UniSTS	Rnor5.0
RGSC_v3.4	16	1,615,853 - 1,615,975	UniSTS	RGSC3.4
RGSC_v3.4	16	1,615,852 - 1,615,975	RGD	RGSC3.4
RGSC_v3.1	16	1,615,852 - 1,615,975	RGD
Celera	16	1,553,215 - 1,553,337	UniSTS
RH 2.0 Map	16	0.0	RGD
Cytogenetic Map	16	p16	UniSTS

D16Chm61

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	3,309,721 - 3,309,913 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	4,065,935 - 4,066,124	NCBI	Rnor6.0
Rnor_5.0	16	4,012,232 - 4,012,421	UniSTS	Rnor5.0
RGSC_v3.4	16	3,394,623 - 3,394,812	UniSTS	RGSC3.4
Celera	16	3,257,094 - 3,257,287	UniSTS
Cytogenetic Map	16	p16	UniSTS

D16Chm49

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	3,443,353 - 3,443,568 (+)	Marker Load Pipeline
mRatBN7.2	16	3,436,714 - 3,436,931 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	4,192,761 - 4,192,973	NCBI	Rnor6.0
Rnor_5.0	16	4,138,811 - 4,139,023	UniSTS	Rnor5.0
RGSC_v3.4	16	3,521,116 - 3,521,328	UniSTS	RGSC3.4
Celera	16	3,383,805 - 3,384,017	UniSTS
Cytogenetic Map	16	p16	UniSTS

D16Chm63

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	2,851,471 - 2,851,709 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,296,451 - 3,296,688	NCBI	Rnor6.0
Rnor_5.0	16	3,263,271 - 3,263,508	UniSTS	Rnor5.0
RGSC_v3.4	16	2,935,575 - 2,935,812	UniSTS	RGSC3.4
Celera	16	2,814,163 - 2,814,400	UniSTS
Cytogenetic Map	16	p16	UniSTS

D16Chm60

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	3,080,416 - 3,080,679 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,524,957 - 3,525,217	NCBI	Rnor6.0
Rnor_5.0	16	3,491,297 - 3,491,557	UniSTS	Rnor5.0
RGSC_v3.4	16	3,164,783 - 3,165,043	UniSTS	RGSC3.4
Celera	16	3,029,112 - 3,029,372	UniSTS
Cytogenetic Map	16	p16	UniSTS

D16Chm66

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	2,995,225 - 2,995,463 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,439,525 - 3,439,762	NCBI	Rnor6.0
Rnor_5.0	16	3,405,986 - 3,406,223	UniSTS	Rnor5.0
RGSC_v3.4	16	3,080,748 - 3,080,985	UniSTS	RGSC3.4
Celera	16	2,957,693 - 2,957,930	UniSTS
Cytogenetic Map	16	p16	UniSTS

D16Got120

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	3,019,970 - 3,020,251 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,464,262 - 3,464,540	NCBI	Rnor6.0
Rnor_5.0	16	3,431,153 - 3,431,431	UniSTS	Rnor5.0
RGSC_v3.4	16	3,107,162 - 3,107,440	UniSTS	RGSC3.4
Celera	16	2,970,868 - 2,971,152	UniSTS
Cytogenetic Map	16	p16	UniSTS

D16Got116

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	3,457,688 - 3,457,796 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	4,213,678 - 4,213,785	NCBI	Rnor6.0
Rnor_5.0	16	4,159,728 - 4,159,835	UniSTS	Rnor5.0
RGSC_v3.4	16	3,541,933 - 3,542,040	UniSTS	RGSC3.4
Celera	16	3,405,234 - 3,405,341	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH135217

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	3,190,738 - 3,190,919 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,635,542 - 3,635,722	NCBI	Rnor6.0
Rnor_5.0	16	3,601,879 - 3,602,059	UniSTS	Rnor5.0
RGSC_v3.4	16	3,275,738 - 3,275,918	UniSTS	RGSC3.4
Celera	16	3,138,335 - 3,138,515	UniSTS
RH 3.4 Map	16	8.9	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH128674

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,457,565 - 1,457,750 (-)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,867,257 - 3,867,441	NCBI	Rnor6.0
Rnor_5.0	16	3,833,167 - 3,833,351	UniSTS	Rnor5.0
RGSC_v3.4	16	1,495,820 - 1,496,004	UniSTS	RGSC3.4
Celera	16	1,433,731 - 1,433,915	UniSTS
RH 3.4 Map	16	16.3	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH133100

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,636,567 - 1,636,763 (-)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,692,452 - 3,692,647	NCBI	Rnor6.0
Rnor_5.0	16	3,658,434 - 3,658,629	UniSTS	Rnor5.0
RGSC_v3.4	16	1,656,619 - 1,656,814	UniSTS	RGSC3.4
Celera	16	1,608,928 - 1,609,123	UniSTS
RH 3.4 Map	16	16.3	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH134489

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,504,078 - 1,504,283 (-)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,820,918 - 3,821,122	NCBI	Rnor6.0
Rnor_5.0	16	3,786,961 - 3,787,165	UniSTS	Rnor5.0
RGSC_v3.4	16	1,542,394 - 1,542,598	UniSTS	RGSC3.4
Celera	16	1,479,882 - 1,480,086	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH143467

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,436,542 - 1,436,651 (-)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,888,355 - 3,888,463	NCBI	Rnor6.0
Rnor_5.0	16	3,854,265 - 3,854,373	UniSTS	Rnor5.0
RGSC_v3.4	16	1,474,798 - 1,474,906	UniSTS	RGSC3.4
Celera	16	1,412,709 - 1,412,817	UniSTS
RH 3.4 Map	16	16.3	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH143925

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,412,515 - 1,412,632 (-)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,912,362 - 3,912,478	NCBI	Rnor6.0
Rnor_5.0	16	3,878,272 - 3,878,388	UniSTS	Rnor5.0
RGSC_v3.4	16	1,449,472 - 1,449,588	UniSTS	RGSC3.4
Celera	16	1,390,205 - 1,390,321	UniSTS
RH 3.4 Map	16	16.3	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH144433

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	3,336,547 - 3,336,806 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	4,092,761 - 4,093,019	NCBI	Rnor6.0
Rnor_5.0	16	4,039,058 - 4,039,316	UniSTS	Rnor5.0
RGSC_v3.4	16	3,421,449 - 3,421,707	UniSTS	RGSC3.4
Celera	16	3,283,951 - 3,284,209	UniSTS
RH 3.4 Map	16	3.8	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH137254

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,393,442 - 1,393,662 (-)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,935,806 - 3,936,025	NCBI	Rnor6.0
Rnor_5.0	16	3,900,421 - 3,900,640	UniSTS	Rnor5.0
RGSC_v3.4	16	1,429,601 - 1,429,820	UniSTS	RGSC3.4
Celera	16	1,371,137 - 1,371,356	UniSTS
Cytogenetic Map	16	p16	UniSTS
Cytogenetic Map	1	q36	UniSTS

RH141274

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,569,780 - 1,569,992 (-)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,755,021 - 3,755,232	NCBI	Rnor6.0
Rnor_5.0	16	3,721,003 - 3,721,214	UniSTS	Rnor5.0
RGSC_v3.4	16	1,608,148 - 1,608,359	UniSTS	RGSC3.4
Celera	16	1,545,511 - 1,545,722	UniSTS
RH 3.4 Map	16	16.3	UniSTS
Cytogenetic Map	16	p16	UniSTS

BE119195

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	3,465,942 - 3,466,103 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	4,221,932 - 4,222,092	NCBI	Rnor6.0
Rnor_5.0	16	4,167,982 - 4,168,142	UniSTS	Rnor5.0
RGSC_v3.4	16	3,550,187 - 3,550,347	UniSTS	RGSC3.4
Celera	16	3,413,488 - 3,413,648	UniSTS
RH 3.4 Map	16	8.8	UniSTS
Cytogenetic Map	16	p16	UniSTS

RH124641

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	1,474,011 - 1,475,632 (-)	MAPPER	mRatBN7.2
Rnor_6.0	16	3,849,941 - 3,851,561	NCBI	Rnor6.0
Rnor_5.0	16	3,815,984 - 3,817,604	UniSTS	Rnor5.0
Cytogenetic Map	16	p16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
8	8	41	113	89	88	57	24	57	6	202	85	93	44	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001401498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_170787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF541925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY049038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020427 ⟹ ENSRNOP00000020427

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	2,848,678 - 3,511,698 (+)	Ensembl
Rnor_6.0 Ensembl	16	3,293,657 - 3,679,222 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000047118 ⟹ ENSRNOP00000041403

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	2,848,678 - 3,511,698 (+)	Ensembl
Rnor_6.0 Ensembl	16	3,293,657 - 3,674,921 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081999 ⟹ ENSRNOP00000071690

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	2,848,620 - 3,498,551 (+)	Ensembl
Rnor_6.0 Ensembl	16	3,293,599 - 3,674,906 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095852 ⟹ ENSRNOP00000093564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	3,092,693 - 3,511,698 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107815 ⟹ ENSRNOP00000096580

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	2,848,620 - 3,670,776 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108129 ⟹ ENSRNOP00000088845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	3,092,693 - 3,096,146 (+)	Ensembl

RefSeq Acc Id:

NM_001401498 ⟹ NP_001388427

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,512 - 3,680,258 (+)	NCBI
mRatBN7.2	16	2,812,825 - 3,673,624 (+)	NCBI

RefSeq Acc Id:

NM_170787 ⟹ NP_740768

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,512 - 3,680,258 (+)	NCBI
mRatBN7.2	16	2,812,825 - 3,673,624 (+)	NCBI
Rnor_6.0	16	3,293,657 - 4,283,592 (+)	NCBI
Rnor_5.0	16	3,260,419 - 4,388,774 (+)	NCBI
RGSC_v3.4	16	2,932,781 - 3,596,299 (+)	RGD
Celera	16	2,811,369 - 3,459,316 (+)	RGD

Sequence:

show sequence

ATGTACGGGAGCGCAAGAACAATCAGCAATCCGGAAGGCAGCCCTTCCAGATCGCCGCGTTTGC
CAAGGTCTCCTCGTTTGGGCCACCGAAGAACAAGCAGTGGGGGAGGGGGAGGGACAGGCAAGAC
TCTGTCTATGGAGAACATCCAGTCCCTTAATGCGGCCTATGCCACGTCTGGACCCATGTACTTG
AGTGACCATGAAGGGGTGGCATCAACAACTTACCCAAAGGGCACCATGACTCTAGGCAGGGCCA
CAAATCGAGCTGTTTATGGAGGCCGGGTCACAGCCATGGGGAGTAGTCCCAATATTGCTTCCGC
TGGACTTTCCCACACAGATGTCCTTTCATATACGGATCAACATGGAGGGCTGGGTGGCTCATCC
CACCACCACCACCACCAGGTGCCCTCCATGTTGAGGCAGGTAAGAGACAGCACGATGTTGGATC
TTCAAGCCCAGCTCAAAGAACTGCAGAGAGAGAATGACCTCCTTCGCAAGGAGCTTGACATTAA
GGACAGCAAACTGGGGTCTTCCATGAATAGCATCAAGACTTTCTGGAGTCCCGAGCTTAAGAAG
GAGAGAGTCTTGAGGAAAGAGGAGGCTGCTCGCATGTCTGTCCTCAAGGAGCAGATGAGGGTTT
CTCACGAAGAAAACCAGTTACTGGACGCCAGAAGAACGAAGCACCTGCAGTTGACCATCCAGGC
CCTTCAGGATGAACTGCGGACCCAGAGAGACCTCAACCACCTCCTGCAGCAAGAGAGTGGCAAC
CGAGGAGCAGAGCATTTCACCATCGAGCTGACGGAGGAGAACTTCCGCAGGCTCCAAGCCGAAC
ACGACAGGCAGGCCAAGGAGCTGTTCCTTCTGCGGAAGACATTGGAAGAAATGGAGCTAAGGAT
TGAAACACAGAAACAGACTCTCAATGCCCGCGACGAGTCCATTAAAAAGCTCCTGGAGATGCTG
CAGAGTAAGGGCTTGCCATCGAAAAGCCTAGAGGACGACAACGAGCGCACACGGCGGATGGCCG
AGGCTGAGTCTCAGGTCAGCCACTTGGAAGTGATTTTAGACCAGAAGGAGAAGGAAAACATCCA
CCTGAGAGAGGAATTGCACCGAAGAAGCCAACTTCAGCCGGAGCCAGCCAAGACGAAGGCGCTC
CAGACTGTCATCGAAATGAAGGACACAAAAATTGCTTCACTGGAGCGGAACATCCGGGACCTCG
AGGATGAGATCCAGATGTTGAAAGCCAATGGTGTGCTCAACACAGAGGACCGAGAGGAGGAGAT
CAAACAGATCGAGGTGTACAAAAGCCACTCCAAGTTTATGAAGACCAAGATTGACCAGCTGAAA
CAGGAACTTTCCAAGAAGGAGTCAGAACTTCTTGCCTTACAAACAAAGCTTGAAACCCTTAGCA
ATCAGAATTCAGATTGCAAGCAACACATTGAAGTGCTTAAAGAGTCACTTACTGCCAAAGAACA
GAGGGCTGCCATCCTTCAGACTGAGATTGAAAACTTGCAAGAACAACTTAGGGATAAGGACAAA
CAACTGACCAACCTGAAAGACAGAGTGAAGTCCCTGCAGACGGACTCCAGCAACACTGACACTG
CTCTGGCCACTCTGGAGGAGGCCTTGTCGGAAAAGGAGAGAATAATAGAGCGCTTGAAAGAGCA
GAGGGAGAGAGATGATCGGGAAAGACTAGAAGAGATAGAATCCTTTCGAAAGGAGAACAAAGAC
CTCAAAGAGAAGGTCAATGCTTTACAGGCTGAGCTGACAGAGAAAGAGTCTAGTTTAATCGACC
TCAAAGAACATGCATCTTCATTAGCTTCTGCAGGACTGAAGAGGGACTCGAAACTGAAGTCTCT
AGAAATAGCCATTGAACAAAAGAAGGAGGAATGCAACAAACTAGAAGCACAATTGAAAAAGCAA
GCTGAACAGTTGTTCAATCAGATGTACAATCCAGCACATAATATTGAAGATGACTCCAGGATGA
ACCCCGAGTTTGCAGACCGACTGAAACAGCTGGACAAGGAAGCATCTTACTACCGTGATGAGTG
TGGCAAGGCTCAAGCAGAAGTCGACAGGTTGCTGGAGATCCTCAAGGAGGTGGAGAATGAGAAA
AACGACAAAGACAAGAAGATTGCGGAACTTGAGAGCTTGACTCTCAGGCATATGAAAGATCAGA
ATAAGAAGGTGGCCAACCTCAAGCACAACCAACAGCTGGAGAAGAAGAAGAACGCCCAGTTATT
AGAAGAAGTGCGCCGGCGAGAAGATAGCATGGTTGACAACTCACAGCATTTGCAGATCGAGGAG
CTGATGAATGCCTTGGAGAAGACCAGACAGGAACTGGACGCCACCAAAGCACGCCTCGCCTCTA
CCCAGCAATCATTGGCTGAGAAGGAAGCACACCTAGCCAATCTCCGGATGGAGAGGAGGAAACA
ACTAGAGGAGATCTTGGAGATGAAACAGGAAGCGTTACTTGCGGCCATCAGTGAAAAGGATGCA
AACATTGCCTTGCTGGAGTTATCTGCCTCCAAGAAGAAAAAGACGCAGGAGGAAGTCATGGCAC
TGAAGCGAGAGAAAGACCGACTGGTGCATCAGTTAAAGCAGCAGACCCAGAATAGAATGAAGCT
GATGGCAGACAACTATGACGACGACCACCACCATTACCACCACCACCACCATCACCACCACCAC
CGGTCTCCTGGGAGGTCACAGCATTCCAACCACAGGCCCTCTCCGGACCAGGATGACGAGGAGG
GCATATGGGCATAGCCGG

hide sequence

RefSeq Acc Id:

XM_017600007 ⟹ XP_017455496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,403 - 3,680,258 (+)	NCBI
mRatBN7.2	16	2,812,716 - 3,673,624 (+)	NCBI
Rnor_6.0	16	3,258,580 - 3,677,152 (+)	NCBI

Sequence:

show sequence

CCCCCTCGGCCCCGCCCGGCCCGGCCCCAGCGCTCGGCGCTGGCCGCGCTCCCCGCCACCTCCC
CGCGCTGCCCGCGCTCCGCTGTCTCGCGCTCCTGATCGCTCCAGCTCCTCCCGGCCGCCCGGTG
CGGCGGCCACGCGAGGTTGTAAAAATCCATGTGGGACCGCGCTGGGGCGAGCATCCCTAAGATC
TCTGAGTGGAGCCATCTCCTGGTACAGCCTCTACAAAGAATGTGGTGAAAGTCTACAGTCAGTG
AAGGAGACATCGGCTTAAGCCATCACGCTGCCTAGCATTTCTTCCCTTCAGTAGCGCCACGTCA
CAGAAGAAAAATGTACGGGAGTGCAAGAACAATCAGCAATCCGGAAGGCAGCCCTTCCAGATCG
CCGCGTTTGCCAAGGTCTCCTCGTTTGGGCCACCGAAGAACAAGCAGTGGGGGAGGGGGAGGGA
CAGGCAAGACTCTGTCTATGGAGAACATCCAGTCCCTTAATGCGGCCTATGCCACGTCTGGACC
CATGTACTTGAGTGACCATGAAGGGGTGGCATCAACAACTTACCCAAAGGGCACCATGACTCTA
GGCAGGGCCACAAATCGAGCTGTTTATGGAGGCCGGGTCACAGCCATGGGGAGTAGTCCCAATA
TTGCTTCCGCTGGACTTTCCCACACAGATGTCCTTTCATATACGGATCAACATGGAGGGCTGGG
TGGCTCATCCCACCACCACCACCACCAGGTGCCCTCCATGTTGAGGCAGGTAAGAGACAGCACG
ATGTTGGATCTTCAAGCCCAGCTCAAAGAACTGCAGAGAGAGAATGACCTCCTTCGCAAGGAGC
TTGACATTAAGGACAGCAAACTGGGGTCTTCCATGAATAGCATCAAGACTTTCTGGAGTCCCGA
GCTTAAGAAGGAGAGAGTCTTGAGGAAAGAGGAGGCTGCTCGCATGTCTGTCCTCAAGGAGCAG
ATGAGGGTTTCTCACGAAGAAAACCAGCACCTGCAGTTGACCATCCAGGCCCTTCAGGATGAAC
TGCGGACCCAGAGAGACCTCAACCACCTCCTGCAGCAAGAGAGTGGCAACCGAGGAGCAGAGCA
TTTCACCATCGAGCTGACGGAGGAGAACTTCCGCAGGCTCCAAGCCGAACACGACAGGCAGGCC
AAGGAGCTGTTCCTTCTGCGGAAGACATTGGAAGAAATGGAGCTAAGGATTGAAACACAGAAAC
AGACTCTCAATGCCCGCGACGAGTCCATTAAAAAGCTCCTGGAGATGCTGCAGAGTAAGGGCTT
GCCATCGAAAAGCCTAGAGGACGACAACGAGCGCACACGGCGGATGGCCGAGGCTGAGTCTCAG
GTCAGCCACTTGGAAGTGATTTTAGACCAGAAGGAGAAGGAAAACATCCACCTGAGAGAGGAAT
TGCACCGAAGAAGCCAACTTCAGCCGGAGCCAGCCAAGACGAAGGCGCTCCAGACTGTCATCGA
AATGAAGGACACAAAAATTGCTTCACTGGAGCGGAACATCCGGGACCTCGAGGATGAGATCCAG
ATGTTGAAAGCCAATGGTGTGCTCAACACAGAGGACCGAGAGGAGGAGATCAAACAGATCGAGG
TGTACAAAAGCCACTCCAAGTTTATGAAGACCAAGATTGACCAGCTGAAACAGGAACTTTCCAA
GAAGGAGTCAGAACTTCTTGCCTTACAAACAAAGCTTGAAACCCTTAGCAATCAGAATTCAGAT
TGCAAGCAACACATTGAAGTGCTTAAAGAGTCACTTACTGCCAAAGAACAGAGGGCTGCCATCC
TTCAGACTGAGGTAGATGCACTGAGATTACGGCTGGAAGAGAAAGAATCTTTTCTCAATAAGAA
AACAAAACAGCTCCAAGACCTCACTGAAGAGAAGGGGACCCTAGCTGGAGAGATCCGTGATATG
AAAGATATGTTAGAAGTAAAGGAAAGAAAAATCAATGTTCTTCAGAAAAAAATTGAAAACTTGC
AAGAACAACTTAGGGATAAGGACAAACAACTGACCAACCTGAAAGACAGAGTGAAGTCCCTGCA
GACGGACTCCAGCAACACTGACACTGCTCTGGCCACTCTGGAGGAGGCCTTGTCGGAAAAGGAG
AGAATAATAGAGCGCTTGAAAGAGCAGAGGGAGAGAGATGATCGGGAAAGACTAGAAGAGATAG
AATCCTTTCGAAAGGAGAACAAAGACCTCAAAGAGAAGGTCAATGCTTTACAGGCTGAGCTGAC
AGAGAAAGAGTCTAGTTTAATCGACCTCAAAGAACATGCATCTTCATTAGCTTCTGCAGGACTG
AAGAGGGACTCGAAACTAAAGTCTCTAGAAATAGCCATTGAACAAAAGAAGGAGGAATGCAACA
AACTAGAAGCACAATTGAAAAAGGTGAGTGAAGTCTAAGAAGAAACGTGCTGATTTTAGAATGA
ATTTATAACATGGTGAAGGAACAATCATTTTTTTAAAAATGAACAAACTCTGTATCATTTGTGG
TCTGCTGATAAAAGAATTTTAATTGAACACTCAAGTTGATTACAGAGGAGTCTGCATCAAGTCT
CTCTCTGTAAATCTGAACAAACTATCCGAAGTTTCCTTTTGAGAGAAAAACTTGAAAAAGACAA
AATGGTAGCAGAAATGAAAAGAATAACAACTGGCCACAACTCTCCGGGAAAATCTAAACTATTC
GAAAAGGGCGAGCGAGAGTGTTTCCAGAAGAGAGAATCCAGAGGTCTCCTTATGTTTTGACAAA
TTTTTACAACTTTCAGAAGTAGGTCAATTTTTGAGGTACAGCTTGGCAAAAATGTTCCTGGCAA
CACTCAATTTCTAGATGTTCACTGAAGTAGCCAAGTCCCTAGTGCATCTGTAGAATGATGGTTT
CTAGTGAATTAATAATGGTCTACTGTCGAAGGAATCTCGTTACAGTCAGAAGTCTTTGGAAAAG
AAAGCAGGCTCTTTCTGTGTGGCCTTCACTGTTCTCTCCAACCTGCACACTGTTGTAGAGTGCA
CCCCGAGTCACGCCTTGTCCCTTCGCCTCTTTCCCTACGTTGTTTGGTTTGTCTGCACTCATTG
TTCATATAAAACTCATAACGTTATTAACTTAAGTCTTTTGTTCCTCTTGACAATGTATGAACTA
AACCGGAAAGAGATAAGAATCTTAACATTCAAATAAAGCATATAAACAAGATTAGACCGTGATC
CACAGCACACTAGAATGAGGGTTTATAAACCAAAGTTATGAAAACGGATGGCACGGGTGGCCAG
AGATATGAGCAGTGCGTGCATCTATCCAAGAGTTATTTTGAATGATTAACATTTAAACATTCTA
TTTTCTGTGAACTTATGCAATCCAAATTGAAATGTAACCGTTTCACCACACAGGCATTTTAGGA
AAATCACCATGAGAAATTTTACACTAAGCAAGTCTACTCACTAAGACTTAGAAGGAATGGCTGT
GGAGATGGCTTCTGGGTAAAACGCTTAGCTCCTATCCCCAGGAGACCCATGGAAAGAAATCCCC
AGGCAGTATGGCATATTCTTGTAATCTTATCCCTGAGAAGTAGGGATGAGTAGGTCTCTGGTAT
CTTTGTCCTCTCAGTTTACTTAATCGTCGAGCTCCAGATTAGTAAGAGACAGTTTGTCAAAGTA
TAAGAACATAAGGTAGAGAAGTAACCAAGGAAGACACTATGTTTACCTCTGATTCATGCTGCAC
AGGGGCACGCACAGTCATGTACACAGGCATACACCACACACAAGCCCACACACACATAGGCACG
TGGGAAAGTAAAGTGAACTATGCCTAGTAAATCTCTCTTAGCAACCTGGTGAGAAAATTTGAAA
AAAAAATTAGTTTCAGAGTTGTTTCAACACCTCCTTTCCTTTAAGTAATATTATTTAGAAAAGC
AGAAATCTGGACTAGTAAGTGGAAGAGTGTAAATTGCCCATTTGAGGATATTTAGGTGGACATT
GAGTTGGCCATTTTAGCATTTGGGACATGAAATATTTTCTTACCATATTTATATTGTACTCTGT
AATATACCAACCTTTACTTAATATGATAGCTTAGTGATCTTCAAACGTAGCACTATGGCCTTTG
CATGATCTTACCTCACTTGGAGTAGTGGCAGGAGACGCTCAAACATAACCCACACCTCAAAAAC
ACCCTCCAGTCATGGAGATCAAAGCTCCACATGTCGGATTTCTACACGTATGTGATTAACATAA
GTCTTTTGTCAGTGTAACTCAGTGTTGGCCTGTGAAATCCCATAGTGACAAGTGGAAGAGCTTC
ACAGCTTGATGCTCTAGTCTCCATATTTATGGTTCAATTCATTTATTGAATCAACATCCATATT
GTTCAGCCCAGTCTGCTTTGGTTTGACTTGGTTTGCCCAAAGGATCACTTGCAGATACCTTTTC
CTCAGACTCCCAGTCAACTCCATTTACTGAAACTCACAGCCCAAGTCCTGCAACATTTCAGCAT
AGTATTTAATGGCATTCTTGTATTCTATAATGTCACCAGCAGTGAAGTGGCACATATAGCTGTC
TTAATGTAAGGGAATTATTTAATTCATGATACAATAACTAATTCCTAAGTATTTGCATAGTCTT
TACTCATACCATCTCCTAAGCACATGGTATAGCAAACT

hide sequence

RefSeq Acc Id:

XM_039094229 ⟹ XP_038950157

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,399 - 3,680,258 (+)	NCBI
mRatBN7.2	16	2,812,712 - 3,673,624 (+)	NCBI

RefSeq Acc Id:

XM_039094232 ⟹ XP_038950160

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,399 - 3,680,258 (+)	NCBI
mRatBN7.2	16	2,812,712 - 3,673,624 (+)	NCBI

RefSeq Acc Id:

XM_039094233 ⟹ XP_038950161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,400 - 3,680,258 (+)	NCBI
mRatBN7.2	16	2,812,714 - 3,673,624 (+)	NCBI

RefSeq Acc Id:

XM_039094235 ⟹ XP_038950163

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,401 - 3,680,258 (+)	NCBI
mRatBN7.2	16	2,812,714 - 3,673,624 (+)	NCBI

RefSeq Acc Id:

XM_063275105 ⟹ XP_063131175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,399 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275106 ⟹ XP_063131176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,399 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275107 ⟹ XP_063131177

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,820,634 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275108 ⟹ XP_063131178

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,399 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275109 ⟹ XP_063131179

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,400 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275110 ⟹ XP_063131180

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,400 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275111 ⟹ XP_063131181

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,400 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275112 ⟹ XP_063131182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,820,634 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275113 ⟹ XP_063131183

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,820,623 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275114 ⟹ XP_063131184

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,400 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275115 ⟹ XP_063131185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,401 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275116 ⟹ XP_063131186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,400 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275117 ⟹ XP_063131187

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,402 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275118 ⟹ XP_063131188

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,403 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275119 ⟹ XP_063131189

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,400 - 3,677,323 (+)	NCBI

RefSeq Acc Id:

XM_063275120 ⟹ XP_063131190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,400 - 3,519,077 (+)	NCBI

RefSeq Acc Id:

XM_063275121 ⟹ XP_063131191

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,403 - 3,519,077 (+)	NCBI

RefSeq Acc Id:

XM_063275122 ⟹ XP_063131192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	3,099,270 - 3,680,258 (+)	NCBI

RefSeq Acc Id:

XM_063275123 ⟹ XP_063131193

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,403 - 3,236,779 (+)	NCBI

RefSeq Acc Id:

XR_010058279

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,399 - 3,677,375 (+)	NCBI

RefSeq Acc Id:

XR_010058280

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,400 - 3,677,375 (+)	NCBI

RefSeq Acc Id:

XR_010058281

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,400 - 3,677,375 (+)	NCBI

RefSeq Acc Id:

XR_010058282

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	2,819,403 - 3,677,375 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001388427	(Get FASTA)	NCBI Sequence Viewer
	NP_740768	(Get FASTA)	NCBI Sequence Viewer
	XP_017455496	(Get FASTA)	NCBI Sequence Viewer
	XP_038950157	(Get FASTA)	NCBI Sequence Viewer
	XP_038950160	(Get FASTA)	NCBI Sequence Viewer
	XP_038950161	(Get FASTA)	NCBI Sequence Viewer
	XP_038950163	(Get FASTA)	NCBI Sequence Viewer
	XP_063131175	(Get FASTA)	NCBI Sequence Viewer
	XP_063131176	(Get FASTA)	NCBI Sequence Viewer
	XP_063131177	(Get FASTA)	NCBI Sequence Viewer
	XP_063131178	(Get FASTA)	NCBI Sequence Viewer
	XP_063131179	(Get FASTA)	NCBI Sequence Viewer
	XP_063131180	(Get FASTA)	NCBI Sequence Viewer
	XP_063131181	(Get FASTA)	NCBI Sequence Viewer
	XP_063131182	(Get FASTA)	NCBI Sequence Viewer
	XP_063131183	(Get FASTA)	NCBI Sequence Viewer
	XP_063131184	(Get FASTA)	NCBI Sequence Viewer
	XP_063131185	(Get FASTA)	NCBI Sequence Viewer
	XP_063131186	(Get FASTA)	NCBI Sequence Viewer
	XP_063131187	(Get FASTA)	NCBI Sequence Viewer
	XP_063131188	(Get FASTA)	NCBI Sequence Viewer
	XP_063131189	(Get FASTA)	NCBI Sequence Viewer
	XP_063131190	(Get FASTA)	NCBI Sequence Viewer
	XP_063131191	(Get FASTA)	NCBI Sequence Viewer
	XP_063131192	(Get FASTA)	NCBI Sequence Viewer
	XP_063131193	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAL07517	(Get FASTA)	NCBI Sequence Viewer
	AAN39292	(Get FASTA)	NCBI Sequence Viewer
	EDL75052	(Get FASTA)	NCBI Sequence Viewer
	EDL75053	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020427
	ENSRNOP00000096580
	ENSRNOP00000099484
	ENSRNOP00000102790
GenBank Protein	Q8K3M6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_740768 ⟸ NM_170787
- Peptide Label:	isoform 2
- UniProtKB:	Z4YNN0 (UniProtKB/TrEMBL), D3ZMM4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYGSARTISNPEGSPSRSPRLPRSPRLGHRRTSSGGGGGTGKTLSMENIQSLNAAYATSGPMYL SDHEGVASTTYPKGTMTLGRATNRAVYGGRVTAMGSSPNIASAGLSHTDVLSYTDQHGGLGGSS HHHHHQVPSMLRQVRDSTMLDLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKK ERVLRKEEAARMSVLKEQMRVSHEENQLLDARRTKHLQLTIQALQDELRTQRDLNHLLQQESGN RGAEHFTIELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEML QSKGLPSKSLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKAL QTVIEMKDTKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLK QELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEIENLQEQLRDKDK QLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKD LKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKQ AEQLFNQMYNPAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEK NDKDKKIAELESLTLRHMKDQNKKVANLKHNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEE LMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRMERRKQLEEILEMKQEALLAAISEKDA NIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKLMADNYDDDHHHYHHHHHHHHH RSPGRSQHSNHRPSPDQDDEEGIWA hide sequence

RefSeq Acc Id:	XP_017455496 ⟸ XM_017600007
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYGSARTISNPEGSPSRSPRLPRSPRLGHRRTSSGGGGGTGKTLSMENIQSLNAAYATSGPMYL SDHEGVASTTYPKGTMTLGRATNRAVYGGRVTAMGSSPNIASAGLSHTDVLSYTDQHGGLGGSS HHHHHQVPSMLRQVRDSTMLDLQAQLKELQRENDLLRKELDIKDSKLGSSMNSIKTFWSPELKK ERVLRKEEAARMSVLKEQMRVSHEENQHLQLTIQALQDELRTQRDLNHLLQQESGNRGAEHFTI ELTEENFRRLQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSK SLEDDNERTRRMAEAESQVSHLEVILDQKEKENIHLREELHRRSQLQPEPAKTKALQTVIEMKD TKIASLERNIRDLEDEIQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKES ELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ LQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDS SNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKE SSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKVSEV hide sequence

Ensembl Acc Id:

ENSRNOP00000020427 ⟸ ENSRNOT00000020427

Ensembl Acc Id:

ENSRNOP00000071690 ⟸ ENSRNOT00000081999

Ensembl Acc Id:

ENSRNOP00000041403 ⟸ ENSRNOT00000047118

RefSeq Acc Id:	XP_038950157 ⟸ XM_039094229
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950160 ⟸ XM_039094232
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950163 ⟸ XM_039094235
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950161 ⟸ XM_039094233
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000088845 ⟸ ENSRNOT00000108129

Ensembl Acc Id:

ENSRNOP00000093564 ⟸ ENSRNOT00000095852

Ensembl Acc Id:

ENSRNOP00000096580 ⟸ ENSRNOT00000107815

RefSeq Acc Id:	NP_001388427 ⟸ NM_001401498
- Peptide Label:	isoform 1
- UniProtKB:	Q8K3M6 (UniProtKB/Swiss-Prot), Q8CIZ0 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063131176 ⟸ XM_063275106
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131178 ⟸ XM_063275108
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131175 ⟸ XM_063275105
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131181 ⟸ XM_063275111
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131180 ⟸ XM_063275110
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131184 ⟸ XM_063275114
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131186 ⟸ XM_063275116
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131179 ⟸ XM_063275109
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131189 ⟸ XM_063275119
- Peptide Label:	isoform X10
- UniProtKB:	D3ZMM4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131190 ⟸ XM_063275120
- Peptide Label:	isoform X11
- UniProtKB:	A0A0G2K140 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131185 ⟸ XM_063275115
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131187 ⟸ XM_063275117
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131188 ⟸ XM_063275118
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131191 ⟸ XM_063275121
- Peptide Label:	isoform X12
- UniProtKB:	D3ZMM4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131193 ⟸ XM_063275123
- Peptide Label:	isoform X14
- UniProtKB:	A6KML3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131183 ⟸ XM_063275113
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131177 ⟸ XM_063275107
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131182 ⟸ XM_063275112
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6API8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131192 ⟸ XM_063275122
- Peptide Label:	isoform X13

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8K3M6-F1-model_v2	AlphaFold	Q8K3M6	1-957	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708372	AgrOrtholog
BioCyc Gene	G2FUF-12234	BioCyc
Ensembl Genes	ENSRNOG00000015148	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000020427	ENTREZGENE
	ENSRNOT00000107815	ENTREZGENE
	ENSRNOT00000155794	ENTREZGENE
	ENSRNOT00000163642	ENTREZGENE
Gene3D-CATH	1.10.287.1490	UniProtKB/Swiss-Prot
InterPro	ELKS/CAST	UniProtKB/Swiss-Prot
KEGG Report	rno:259269	UniProtKB/Swiss-Prot
NCBI Gene	259269	ENTREZGENE
PANTHER	ELKS/RAB6-INTERACTING/CAST PROTEIN	UniProtKB/Swiss-Prot
	PTHR18861:SF3	UniProtKB/Swiss-Prot
Pfam	Cast	UniProtKB/Swiss-Prot
PhenoGen	Erc2	PhenoGen
RatGTEx	ENSRNOG00000015148	RatGTEx
Superfamily-SCOP	Tropomyosin	UniProtKB/Swiss-Prot
UniProt	A0A0G2K140	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AJN2_RAT	UniProtKB/TrEMBL
	A0A8I6AK27_RAT	UniProtKB/TrEMBL
	A0A8I6API8	ENTREZGENE, UniProtKB/TrEMBL
	A6KML3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZMM4	ENTREZGENE, UniProtKB/TrEMBL
	ERC2_RAT	UniProtKB/Swiss-Prot
	Q8CIZ0	ENTREZGENE
	Q8K3M6	ENTREZGENE
	Z4YNN0	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	Q8CIZ0	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Erc2	ELKS/RAB6-interacting/CAST family member 2	LOC100360615	ELKS/RAB6-interacting/CAST family member 2	Data merged from RGD:2321742	1643240	APPROVED
2010-05-06	LOC100360615	ELKS/RAB6-interacting/CAST family member 2			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-02-25	Erc2	ELKS/RAB6-interacting/CAST family member 2	Cmbp	cytomatrix protein p110	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-09-30	Cmbp				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message