Erc2 (ELKS/RAB6-interacting/CAST family member 2) - Rat Genome Database

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Gene: Erc2 (ELKS/RAB6-interacting/CAST family member 2) Rattus norvegicus
Analyze
Symbol: Erc2
Name: ELKS/RAB6-interacting/CAST family member 2
RGD ID: 708372
Description: Enables PDZ domain binding activity. Involved in synapse organization. Located in several cellular components, including distal axon; presynaptic active zone; and presynaptic membrane. Part of protein-containing complex. Is active in presynaptic active zone cytoplasmic component. Orthologous to human ERC2 (ELKS/RAB6-interacting/CAST family member 2); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Cast; CAST1; CAZ-associated structural protein; CAZ-associated structural protein 1; Cmbp; cytomatrix protein p110; ERC protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8162,819,399 - 3,680,258 (+)NCBIGRCr8
mRatBN7.2162,812,712 - 3,673,624 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl162,848,620 - 3,670,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx162,819,340 - 3,680,212 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0163,965,020 - 4,825,629 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,824,168 - 3,685,138 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0163,258,580 - 4,283,592 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,293,599 - 3,679,222 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,260,419 - 4,388,774 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,932,781 - 3,596,299 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1162,932,780 - 3,596,297 (+)NCBI
Celera162,811,369 - 3,459,316 (+)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Interaction of the ERC family of RIM-binding proteins with the liprin-alpha family of multidomain proteins. Ko J, etal., J Biol Chem 2003 Oct 24;278(43):42377-85. Epub 2003 Aug 15.
3. Formation of Golgi-derived active zone precursor vesicles. Maas C, etal., J Neurosci. 2012 Aug 8;32(32):11095-108. doi: 10.1523/JNEUROSCI.0195-12.2012.
4. Cast: a novel protein of the cytomatrix at the active zone of synapses that forms a ternary complex with RIM1 and munc13-1. Ohtsuka T, etal., J Cell Biol 2002 Aug 5;158(3):577-90. Epub 2002 Aug 5.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. A family of RIM-binding proteins regulated by alternative splicing: Implications for the genesis of synaptic active zones. Wang Y, etal., Proc Natl Acad Sci U S A 2002 Oct 29;99(22):14464-9.
Additional References at PubMed
PMID:14723704   PMID:14734538   PMID:16421316   PMID:19874790   PMID:21700703   PMID:23791195   PMID:27537483   PMID:28264913   PMID:29439199   PMID:36555116  


Genomics

Comparative Map Data
Erc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8162,819,399 - 3,680,258 (+)NCBIGRCr8
mRatBN7.2162,812,712 - 3,673,624 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl162,848,620 - 3,670,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx162,819,340 - 3,680,212 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0163,965,020 - 4,825,629 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,824,168 - 3,685,138 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0163,258,580 - 4,283,592 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,293,599 - 3,679,222 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,260,419 - 4,388,774 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,932,781 - 3,596,299 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1162,932,780 - 3,596,297 (+)NCBI
Celera162,811,369 - 3,459,316 (+)NCBICelera
Cytogenetic Map16p16NCBI
ERC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38355,508,311 - 56,468,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl355,508,311 - 56,469,095 (-)EnsemblGRCh38hg38GRCh38
GRCh37355,542,339 - 56,502,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36355,517,376 - 56,477,431 (-)NCBINCBI36Build 36hg18NCBI36
Celera355,509,269 - 56,468,649 (-)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef355,591,133 - 56,551,243 (-)NCBIHuRef
CHM1_1355,493,671 - 56,453,566 (-)NCBICHM1_1
T2T-CHM13v2.0355,542,510 - 56,508,891 (-)NCBIT2T-CHM13v2.0
Erc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391427,344,232 - 28,200,494 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1427,344,385 - 28,200,494 (+)EnsemblGRCm39 Ensembl
GRCm381427,622,275 - 28,478,537 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1427,622,428 - 28,478,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv371428,435,628 - 29,291,723 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361426,449,326 - 27,305,403 (+)NCBIMGSCv36mm8
Celera1423,854,528 - 24,727,160 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1416.51NCBI
Erc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554305,513,662 - 6,308,882 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554305,345,191 - 6,308,909 (-)NCBIChiLan1.0ChiLan1.0
ERC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2255,491,457 - 56,468,006 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1355,496,228 - 56,472,777 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0355,438,875 - 56,417,072 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1356,659,377 - 57,599,384 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl356,836,941 - 57,599,248 (-)Ensemblpanpan1.1panPan2
ERC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12033,842,753 - 34,748,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2033,842,753 - 34,746,491 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2033,769,262 - 34,672,553 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02034,114,565 - 35,020,292 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2034,114,216 - 35,020,299 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12033,558,663 - 34,463,362 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02033,918,155 - 34,823,551 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02034,092,812 - 35,039,347 (+)NCBIUU_Cfam_GSD_1.0
Erc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118172,937,212 - 173,811,690 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364736,075,769 - 6,950,263 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364736,075,811 - 6,532,671 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1337,388,517 - 38,367,504 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11337,388,513 - 38,367,512 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21341,281,049 - 41,624,117 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12216,851,862 - 17,817,504 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2217,034,445 - 17,817,522 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041149,054,724 - 150,028,608 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624822756,550 - 1,807,175 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624822756,532 - 1,806,129 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Erc2
5740 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:180
Count of miRNA genes:73
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000020427, ENSRNOT00000047118
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)163802452995463Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)168323802995225Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
12903954Bw186Body weight QTL 1860.011body mass (VT:0001259)body weight (CMO:0000012)168323802995225Rat
12903955Kidm69Kidney mass QTL 690.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)168323804227609Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
12903278Am16Aortic mass QTL 160.019aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)168323802995225Rat
12903279Cm115Cardiac mass QTL 1150.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)168323802995225Rat
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
12903281Cm116Cardiac mass QTL 1160.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)168323802995225Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2301404Bp321Blood pressure QTL 3210.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)168323802995225Rat

Markers in Region
D16Rat22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,453,660 - 3,453,842 (+)MAPPERmRatBN7.2
Rnor_6.0164,209,654 - 4,209,831NCBIRnor6.0
Rnor_5.0164,155,704 - 4,155,881UniSTSRnor5.0
RGSC_v3.4163,537,908 - 3,538,086RGDRGSC3.4
RGSC_v3.4163,537,909 - 3,538,086UniSTSRGSC3.4
RGSC_v3.1163,537,906 - 3,538,084RGD
Celera163,401,210 - 3,401,387UniSTS
RH 3.4 Map1610.5RGD
RH 3.4 Map1610.5UniSTS
RH 2.0 Map17225.3RGD
FHH x ACI Map162.07RGD
Cytogenetic Map16p16UniSTS
D16Rat51  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,391,305 - 3,391,527 (+)MAPPERmRatBN7.2
Rnor_6.0164,147,508 - 4,147,729NCBIRnor6.0
Rnor_5.0164,093,805 - 4,094,026UniSTSRnor5.0
RGSC_v3.4163,476,195 - 3,476,417RGDRGSC3.4
RGSC_v3.4163,476,196 - 3,476,417UniSTSRGSC3.4
RGSC_v3.1163,476,194 - 3,476,415RGD
Celera163,338,671 - 3,338,892UniSTS
RH 3.4 Map168.6RGD
RH 3.4 Map168.6UniSTS
RH 2.0 Map160.0RGD
FHH x ACI Map161.9999RGD
Cytogenetic Map16p16UniSTS
D16Rat87  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,380,150 - 3,380,363 (+)MAPPERmRatBN7.2
Rnor_6.0164,136,355 - 4,136,567NCBIRnor6.0
Rnor_5.0164,082,652 - 4,082,864UniSTSRnor5.0
RGSC_v3.4163,464,719 - 3,465,256RGDRGSC3.4
RGSC_v3.4163,465,043 - 3,465,255UniSTSRGSC3.4
RGSC_v3.1163,465,041 - 3,465,253RGD
Celera163,327,539 - 3,327,727UniSTS
RH 3.4 Map168.8UniSTS
RH 3.4 Map168.8RGD
SHRSP x BN Map160.0UniSTS
SHRSP x BN Map160.0RGD
Cytogenetic Map16p16UniSTS
D16Got3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,447,063 - 3,447,332 (+)MAPPERmRatBN7.2
Rnor_6.0164,203,104 - 4,203,372NCBIRnor6.0
Rnor_5.0164,149,154 - 4,149,422UniSTSRnor5.0
RGSC_v3.4163,531,458 - 3,531,727RGDRGSC3.4
RGSC_v3.4163,531,459 - 3,531,727UniSTSRGSC3.4
RGSC_v3.1163,531,457 - 3,531,725RGD
Celera163,394,651 - 3,394,919UniSTS
RH 3.4 Map1613.6UniSTS
RH 3.4 Map1613.6RGD
RH 2.0 Map160.0RGD
Cytogenetic Map16p16UniSTS
D16Got6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,577,486 - 1,577,609 (-)MAPPERmRatBN7.2
Rnor_6.0163,747,405 - 3,747,527NCBIRnor6.0
Rnor_5.0163,713,387 - 3,713,509UniSTSRnor5.0
RGSC_v3.4161,615,852 - 1,615,975RGDRGSC3.4
RGSC_v3.4161,615,853 - 1,615,975UniSTSRGSC3.4
RGSC_v3.1161,615,852 - 1,615,975RGD
Celera161,553,215 - 1,553,337UniSTS
RH 2.0 Map160.0RGD
Cytogenetic Map16p16UniSTS
D16Chm61  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,309,721 - 3,309,913 (+)MAPPERmRatBN7.2
Rnor_6.0164,065,935 - 4,066,124NCBIRnor6.0
Rnor_5.0164,012,232 - 4,012,421UniSTSRnor5.0
RGSC_v3.4163,394,623 - 3,394,812UniSTSRGSC3.4
Celera163,257,094 - 3,257,287UniSTS
Cytogenetic Map16p16UniSTS
D16Chm49  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,436,714 - 3,436,931 (+)MAPPERmRatBN7.2
Rnor_6.0164,192,761 - 4,192,973NCBIRnor6.0
Rnor_5.0164,138,811 - 4,139,023UniSTSRnor5.0
RGSC_v3.4163,521,116 - 3,521,328UniSTSRGSC3.4
Celera163,383,805 - 3,384,017UniSTS
Cytogenetic Map16p16UniSTS
D16Chm63  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2162,851,471 - 2,851,709 (+)MAPPERmRatBN7.2
Rnor_6.0163,296,451 - 3,296,688NCBIRnor6.0
Rnor_5.0163,263,271 - 3,263,508UniSTSRnor5.0
RGSC_v3.4162,935,575 - 2,935,812UniSTSRGSC3.4
Celera162,814,163 - 2,814,400UniSTS
Cytogenetic Map16p16UniSTS
D16Chm60  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,080,416 - 3,080,679 (+)MAPPERmRatBN7.2
Rnor_6.0163,524,957 - 3,525,217NCBIRnor6.0
Rnor_5.0163,491,297 - 3,491,557UniSTSRnor5.0
RGSC_v3.4163,164,783 - 3,165,043UniSTSRGSC3.4
Celera163,029,112 - 3,029,372UniSTS
Cytogenetic Map16p16UniSTS
D16Chm66  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2162,995,225 - 2,995,463 (+)MAPPERmRatBN7.2
Rnor_6.0163,439,525 - 3,439,762NCBIRnor6.0
Rnor_5.0163,405,986 - 3,406,223UniSTSRnor5.0
RGSC_v3.4163,080,748 - 3,080,985UniSTSRGSC3.4
Celera162,957,693 - 2,957,930UniSTS
Cytogenetic Map16p16UniSTS
D16Got120  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,019,970 - 3,020,251 (+)MAPPERmRatBN7.2
Rnor_6.0163,464,262 - 3,464,540NCBIRnor6.0
Rnor_5.0163,431,153 - 3,431,431UniSTSRnor5.0
RGSC_v3.4163,107,162 - 3,107,440UniSTSRGSC3.4
Celera162,970,868 - 2,971,152UniSTS
Cytogenetic Map16p16UniSTS
D16Got116  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,457,688 - 3,457,796 (+)MAPPERmRatBN7.2
Rnor_6.0164,213,678 - 4,213,785NCBIRnor6.0
Rnor_5.0164,159,728 - 4,159,835UniSTSRnor5.0
RGSC_v3.4163,541,933 - 3,542,040UniSTSRGSC3.4
Celera163,405,234 - 3,405,341UniSTS
Cytogenetic Map16p16UniSTS
RH135217  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,190,738 - 3,190,919 (+)MAPPERmRatBN7.2
Rnor_6.0163,635,542 - 3,635,722NCBIRnor6.0
Rnor_5.0163,601,879 - 3,602,059UniSTSRnor5.0
RGSC_v3.4163,275,738 - 3,275,918UniSTSRGSC3.4
Celera163,138,335 - 3,138,515UniSTS
RH 3.4 Map168.9UniSTS
Cytogenetic Map16p16UniSTS
RH128674  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,457,565 - 1,457,750 (-)MAPPERmRatBN7.2
Rnor_6.0163,867,257 - 3,867,441NCBIRnor6.0
Rnor_5.0163,833,167 - 3,833,351UniSTSRnor5.0
RGSC_v3.4161,495,820 - 1,496,004UniSTSRGSC3.4
Celera161,433,731 - 1,433,915UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH133100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,636,567 - 1,636,763 (-)MAPPERmRatBN7.2
Rnor_6.0163,692,452 - 3,692,647NCBIRnor6.0
Rnor_5.0163,658,434 - 3,658,629UniSTSRnor5.0
RGSC_v3.4161,656,619 - 1,656,814UniSTSRGSC3.4
Celera161,608,928 - 1,609,123UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH134489  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,504,078 - 1,504,283 (-)MAPPERmRatBN7.2
Rnor_6.0163,820,918 - 3,821,122NCBIRnor6.0
Rnor_5.0163,786,961 - 3,787,165UniSTSRnor5.0
RGSC_v3.4161,542,394 - 1,542,598UniSTSRGSC3.4
Celera161,479,882 - 1,480,086UniSTS
Cytogenetic Map16p16UniSTS
RH143467  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,436,542 - 1,436,651 (-)MAPPERmRatBN7.2
Rnor_6.0163,888,355 - 3,888,463NCBIRnor6.0
Rnor_5.0163,854,265 - 3,854,373UniSTSRnor5.0
RGSC_v3.4161,474,798 - 1,474,906UniSTSRGSC3.4
Celera161,412,709 - 1,412,817UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH143925  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,412,515 - 1,412,632 (-)MAPPERmRatBN7.2
Rnor_6.0163,912,362 - 3,912,478NCBIRnor6.0
Rnor_5.0163,878,272 - 3,878,388UniSTSRnor5.0
RGSC_v3.4161,449,472 - 1,449,588UniSTSRGSC3.4
Celera161,390,205 - 1,390,321UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH144433  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,336,547 - 3,336,806 (+)MAPPERmRatBN7.2
Rnor_6.0164,092,761 - 4,093,019NCBIRnor6.0
Rnor_5.0164,039,058 - 4,039,316UniSTSRnor5.0
RGSC_v3.4163,421,449 - 3,421,707UniSTSRGSC3.4
Celera163,283,951 - 3,284,209UniSTS
RH 3.4 Map163.8UniSTS
Cytogenetic Map16p16UniSTS
RH137254  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,393,442 - 1,393,662 (-)MAPPERmRatBN7.2
Rnor_6.0163,935,806 - 3,936,025NCBIRnor6.0
Rnor_5.0163,900,421 - 3,900,640UniSTSRnor5.0
RGSC_v3.4161,429,601 - 1,429,820UniSTSRGSC3.4
Celera161,371,137 - 1,371,356UniSTS
Cytogenetic Map16p16UniSTS
Cytogenetic Map1q36UniSTS
RH141274  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,569,780 - 1,569,992 (-)MAPPERmRatBN7.2
Rnor_6.0163,755,021 - 3,755,232NCBIRnor6.0
Rnor_5.0163,721,003 - 3,721,214UniSTSRnor5.0
RGSC_v3.4161,608,148 - 1,608,359UniSTSRGSC3.4
Celera161,545,511 - 1,545,722UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
BE119195  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2163,465,942 - 3,466,103 (+)MAPPERmRatBN7.2
Rnor_6.0164,221,932 - 4,222,092NCBIRnor6.0
Rnor_5.0164,167,982 - 4,168,142UniSTSRnor5.0
RGSC_v3.4163,550,187 - 3,550,347UniSTSRGSC3.4
Celera163,413,488 - 3,413,648UniSTS
RH 3.4 Map168.8UniSTS
Cytogenetic Map16p16UniSTS
RH124641  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,474,011 - 1,475,632 (-)MAPPERmRatBN7.2
Rnor_6.0163,849,941 - 3,851,561NCBIRnor6.0
Rnor_5.0163,815,984 - 3,817,604UniSTSRnor5.0
Cytogenetic Map16p16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 60
Low 20 25 17 3 17 14 30 39 8
Below cutoff 2 15 30 22 15 22 8 8 5 2 3 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001401498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_170787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC135197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF541925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY049038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000020427   ⟹   ENSRNOP00000020427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl162,848,678 - 3,511,698 (+)Ensembl
Rnor_6.0 Ensembl163,293,657 - 3,679,222 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000047118   ⟹   ENSRNOP00000041403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl162,848,678 - 3,511,698 (+)Ensembl
Rnor_6.0 Ensembl163,293,657 - 3,674,921 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081999   ⟹   ENSRNOP00000071690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl162,848,620 - 3,498,551 (+)Ensembl
Rnor_6.0 Ensembl163,293,599 - 3,674,906 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095852   ⟹   ENSRNOP00000093564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl163,092,693 - 3,511,698 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107815   ⟹   ENSRNOP00000096580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl162,848,620 - 3,670,776 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108129   ⟹   ENSRNOP00000088845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl163,092,693 - 3,096,146 (+)Ensembl
RefSeq Acc Id: NM_001401498   ⟹   NP_001388427
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,512 - 3,680,258 (+)NCBI
mRatBN7.2162,812,825 - 3,673,624 (+)NCBI
RefSeq Acc Id: NM_170787   ⟹   NP_740768
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,512 - 3,680,258 (+)NCBI
mRatBN7.2162,812,825 - 3,673,624 (+)NCBI
Rnor_6.0163,293,657 - 4,283,592 (+)NCBI
Rnor_5.0163,260,419 - 4,388,774 (+)NCBI
RGSC_v3.4162,932,781 - 3,596,299 (+)RGD
Celera162,811,369 - 3,459,316 (+)RGD
Sequence:
RefSeq Acc Id: XM_017600007   ⟹   XP_017455496
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,403 - 3,680,258 (+)NCBI
mRatBN7.2162,812,716 - 3,673,624 (+)NCBI
Rnor_6.0163,258,580 - 3,677,152 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094229   ⟹   XP_038950157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,399 - 3,680,258 (+)NCBI
mRatBN7.2162,812,712 - 3,673,624 (+)NCBI
RefSeq Acc Id: XM_039094232   ⟹   XP_038950160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,399 - 3,680,258 (+)NCBI
mRatBN7.2162,812,712 - 3,673,624 (+)NCBI
RefSeq Acc Id: XM_039094233   ⟹   XP_038950161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,400 - 3,680,258 (+)NCBI
mRatBN7.2162,812,714 - 3,673,624 (+)NCBI
RefSeq Acc Id: XM_039094235   ⟹   XP_038950163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,401 - 3,680,258 (+)NCBI
mRatBN7.2162,812,714 - 3,673,624 (+)NCBI
RefSeq Acc Id: XM_063275105   ⟹   XP_063131175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,399 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275106   ⟹   XP_063131176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,399 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275107   ⟹   XP_063131177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,820,634 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275108   ⟹   XP_063131178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,399 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275109   ⟹   XP_063131179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,400 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275110   ⟹   XP_063131180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,400 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275111   ⟹   XP_063131181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,400 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275112   ⟹   XP_063131182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,820,634 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275113   ⟹   XP_063131183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,820,623 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275114   ⟹   XP_063131184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,400 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275115   ⟹   XP_063131185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,401 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275116   ⟹   XP_063131186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,400 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275117   ⟹   XP_063131187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,402 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275118   ⟹   XP_063131188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,403 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275119   ⟹   XP_063131189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,400 - 3,677,323 (+)NCBI
RefSeq Acc Id: XM_063275120   ⟹   XP_063131190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,400 - 3,519,077 (+)NCBI
RefSeq Acc Id: XM_063275121   ⟹   XP_063131191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,403 - 3,519,077 (+)NCBI
RefSeq Acc Id: XM_063275122   ⟹   XP_063131192
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8163,099,270 - 3,680,258 (+)NCBI
RefSeq Acc Id: XM_063275123   ⟹   XP_063131193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,403 - 3,236,779 (+)NCBI
RefSeq Acc Id: XR_010058279
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,399 - 3,677,375 (+)NCBI
RefSeq Acc Id: XR_010058280
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,400 - 3,677,375 (+)NCBI
RefSeq Acc Id: XR_010058281
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,400 - 3,677,375 (+)NCBI
RefSeq Acc Id: XR_010058282
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,819,403 - 3,677,375 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001388427 (Get FASTA)   NCBI Sequence Viewer  
  NP_740768 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455496 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950157 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950160 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950161 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950163 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131175 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131176 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131177 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131178 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131179 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131180 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131181 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131182 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131183 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131184 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131185 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131186 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131187 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131188 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131189 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131190 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131191 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131192 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131193 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL07517 (Get FASTA)   NCBI Sequence Viewer  
  AAN39292 (Get FASTA)   NCBI Sequence Viewer  
  EDL75052 (Get FASTA)   NCBI Sequence Viewer  
  EDL75053 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020427
  ENSRNOP00000020427.7
  ENSRNOP00000041403.5
  ENSRNOP00000071690.2
  ENSRNOP00000088845.1
  ENSRNOP00000093564.1
  ENSRNOP00000096580
  ENSRNOP00000096580.1
GenBank Protein Q8K3M6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_740768   ⟸   NM_170787
- Peptide Label: isoform 2
- UniProtKB: Z4YNN0 (UniProtKB/TrEMBL),   D3ZMM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455496   ⟸   XM_017600007
- Peptide Label: isoform X9
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000020427   ⟸   ENSRNOT00000020427
RefSeq Acc Id: ENSRNOP00000071690   ⟸   ENSRNOT00000081999
RefSeq Acc Id: ENSRNOP00000041403   ⟸   ENSRNOT00000047118
RefSeq Acc Id: XP_038950157   ⟸   XM_039094229
- Peptide Label: isoform X1
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950160   ⟸   XM_039094232
- Peptide Label: isoform X3
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950163   ⟸   XM_039094235
- Peptide Label: isoform X8
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950161   ⟸   XM_039094233
- Peptide Label: isoform X4
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000088845   ⟸   ENSRNOT00000108129
RefSeq Acc Id: ENSRNOP00000093564   ⟸   ENSRNOT00000095852
RefSeq Acc Id: ENSRNOP00000096580   ⟸   ENSRNOT00000107815
RefSeq Acc Id: NP_001388427   ⟸   NM_001401498
- Peptide Label: isoform 1
- UniProtKB: Q8K3M6 (UniProtKB/Swiss-Prot),   Q8CIZ0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063131176   ⟸   XM_063275106
- Peptide Label: isoform X1
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131178   ⟸   XM_063275108
- Peptide Label: isoform X1
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131175   ⟸   XM_063275105
- Peptide Label: isoform X1
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131181   ⟸   XM_063275111
- Peptide Label: isoform X2
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131180   ⟸   XM_063275110
- Peptide Label: isoform X2
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131184   ⟸   XM_063275114
- Peptide Label: isoform X4
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131186   ⟸   XM_063275116
- Peptide Label: isoform X6
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131179   ⟸   XM_063275109
- Peptide Label: isoform X2
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131189   ⟸   XM_063275119
- Peptide Label: isoform X10
- UniProtKB: D3ZMM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131190   ⟸   XM_063275120
- Peptide Label: isoform X11
- UniProtKB: A0A0G2K140 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131185   ⟸   XM_063275115
- Peptide Label: isoform X5
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131187   ⟸   XM_063275117
- Peptide Label: isoform X7
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131188   ⟸   XM_063275118
- Peptide Label: isoform X9
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131191   ⟸   XM_063275121
- Peptide Label: isoform X12
- UniProtKB: D3ZMM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131193   ⟸   XM_063275123
- Peptide Label: isoform X14
- UniProtKB: A6KML3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131183   ⟸   XM_063275113
- Peptide Label: isoform X4
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131177   ⟸   XM_063275107
- Peptide Label: isoform X1
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131182   ⟸   XM_063275112
- Peptide Label: isoform X2
- UniProtKB: A0A8I6API8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131192   ⟸   XM_063275122
- Peptide Label: isoform X13

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K3M6-F1-model_v2 AlphaFold Q8K3M6 1-957 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708372 AgrOrtholog
BioCyc Gene G2FUF-12234 BioCyc
Ensembl Genes ENSRNOG00000015148 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020427 ENTREZGENE
  ENSRNOT00000020427.7 UniProtKB/TrEMBL
  ENSRNOT00000047118.6 UniProtKB/TrEMBL
  ENSRNOT00000081999.2 UniProtKB/TrEMBL
  ENSRNOT00000095852.1 UniProtKB/TrEMBL
  ENSRNOT00000107815 ENTREZGENE
  ENSRNOT00000107815.1 UniProtKB/TrEMBL
  ENSRNOT00000108129.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ELKS/CAST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:259269 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 259269 ENTREZGENE
PANTHER ELKS/RAB6-INTERACTING/CAST PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR18861:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cast UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Erc2 PhenoGen
RatGTEx ENSRNOG00000015148 RatGTEx
Superfamily-SCOP Tropomyosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K140 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJN2_RAT UniProtKB/TrEMBL
  A0A8I6AK27_RAT UniProtKB/TrEMBL
  A0A8I6API8 ENTREZGENE, UniProtKB/TrEMBL
  A6KML3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZMM4 ENTREZGENE, UniProtKB/TrEMBL
  ERC2_RAT UniProtKB/Swiss-Prot
  Q8CIZ0 ENTREZGENE
  Q8K3M6 ENTREZGENE
  Z4YNN0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q8CIZ0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Erc2  ELKS/RAB6-interacting/CAST family member 2  LOC100360615  ELKS/RAB6-interacting/CAST family member 2  Data merged from RGD:2321742 1643240 APPROVED
2010-05-06 LOC100360615  ELKS/RAB6-interacting/CAST family member 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-25 Erc2  ELKS/RAB6-interacting/CAST family member 2  Cmbp  cytomatrix protein p110  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 Cmbp        Symbol and Name status set to provisional 70820 PROVISIONAL