Pclo (piccolo (presynaptic cytomatrix protein)) - Rat Genome Database

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Gene: Pclo (piccolo (presynaptic cytomatrix protein)) Mus musculus
Analyze
Symbol: Pclo
Name: piccolo (presynaptic cytomatrix protein)
RGD ID: 69450
MGI Page MGI
Description: Enables profilin binding activity. A structural constituent of presynaptic active zone. Involved in presynaptic actin cytoskeleton organization; protein localization to synapse; and synaptic vesicle clustering. Acts upstream of or within cytoskeleton organization; insulin secretion; and regulation of exocytosis. Located in postsynaptic density. Is expressed in nervous system and sensory organ. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 3. Orthologous to human PCLO (piccolo presynaptic cytomatrix protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ac; Acz; aczonin; brain-derived HLMN protein; mKIAA0559; multidomain presynaptic cytomatrix protein; P; Pico; protein piccolo
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39514,564,924 - 14,913,479 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl514,564,932 - 14,913,473 (+)EnsemblGRCm39 Ensembl
GRCm38514,514,906 - 14,863,465 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl514,514,918 - 14,863,459 (+)EnsemblGRCm38mm10GRCm38
MGSCv37514,514,918 - 14,863,459 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36514,520,924 - 14,801,999 (+)NCBIMGSCv36mm8
Celera1224,890,712 - 25,239,859 (+)NCBICelera
Cytogenetic Map5A1- A2NCBI
cM Map56.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. An unusual C(2)-domain in the active-zone protein piccolo: implications for Ca(2+) regulation of neurotransmitter release. Gerber SH, etal., EMBO J 2001 Apr 2;20(7):1605-19.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10508862   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12401793   PMID:12465718   PMID:15572359   PMID:16141072   PMID:16141073  
PMID:16452087   PMID:16452088   PMID:16602821   PMID:16987237   PMID:17114649   PMID:17435594   PMID:18195717   PMID:18799693   PMID:19766155   PMID:19812333   PMID:20332206   PMID:21144999  
PMID:21228161   PMID:21267068   PMID:21873635   PMID:21935939   PMID:21976510   PMID:22794259   PMID:23403927   PMID:23936420   PMID:23948231   PMID:24316575   PMID:24952961   PMID:25652077  
PMID:26045179   PMID:26793095   PMID:27321892   PMID:28386022   PMID:28634551   PMID:28706196   PMID:29518331   PMID:30696732   PMID:31138677   PMID:31804576   PMID:32325033   PMID:33378226  
PMID:33601422   PMID:33882456   PMID:34321999   PMID:36417873   PMID:37142655   PMID:37816598  


Genomics

Comparative Map Data
Pclo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39514,564,924 - 14,913,479 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl514,564,932 - 14,913,473 (+)EnsemblGRCm39 Ensembl
GRCm38514,514,906 - 14,863,465 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl514,514,918 - 14,863,459 (+)EnsemblGRCm38mm10GRCm38
MGSCv37514,514,918 - 14,863,459 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36514,520,924 - 14,801,999 (+)NCBIMGSCv36mm8
Celera1224,890,712 - 25,239,859 (+)NCBICelera
Cytogenetic Map5A1- A2NCBI
cM Map56.27NCBI
PCLO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38782,754,012 - 83,162,884 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl782,754,012 - 83,162,930 (-)EnsemblGRCh38hg38GRCh38
GRCh37782,383,328 - 82,792,200 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36782,225,378 - 82,630,133 (-)NCBINCBI36Build 36hg18NCBI36
Build 34782,188,346 - 82,224,200NCBI
Celera777,083,829 - 77,492,761 (-)NCBICelera
Cytogenetic Map7q21.11NCBI
HuRef776,984,730 - 77,393,999 (-)NCBIHuRef
CHM1_1782,313,403 - 82,722,210 (-)NCBICHM1_1
T2T-CHM13v2.0784,005,231 - 84,414,103 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2781,715,437 - 82,124,409 (-)NCBI
Pclo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8420,646,604 - 21,005,171 (-)NCBIGRCr8
mRatBN7.2419,691,439 - 20,050,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl419,695,315 - 20,049,885 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx424,865,942 - 25,222,133 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0420,697,245 - 21,053,987 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0419,078,298 - 19,437,003 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0416,454,904 - 17,058,921 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl416,454,904 - 17,058,921 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0416,923,700 - 17,031,648 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0416,428,814 - 16,661,584 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4415,911,051 - 16,269,090 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1415,911,050 - 16,269,090 (-)NCBI
Celera415,219,539 - 15,569,109 (-)NCBICelera
Cytogenetic Map4q12NCBI
Pclo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554103,152,202 - 3,292,920 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554102,998,345 - 3,334,056 (+)NCBIChiLan1.0ChiLan1.0
PCLO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26100,601,124 - 101,013,577 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17148,865,761 - 149,278,209 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0774,714,364 - 75,126,518 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1788,378,218 - 88,789,302 (-)NCBIpanpan1.1PanPan1.1panPan2
PCLO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11822,385,102 - 22,701,944 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1822,385,100 - 22,706,793 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1821,995,716 - 22,385,731 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01822,770,098 - 23,160,278 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1822,770,852 - 22,983,764 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11822,405,472 - 22,795,049 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01821,940,459 - 22,330,520 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01822,596,545 - 22,986,291 (-)NCBIUU_Cfam_GSD_1.0
Pclo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511864,071,317 - 64,473,183 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367341,277,591 - 1,479,521 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367341,273,055 - 1,674,913 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCLO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl997,114,511 - 97,513,072 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1997,114,503 - 97,513,081 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29107,331,780 - 107,730,093 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCLO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12165,729,762 - 66,129,806 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604237,825,087 - 38,233,533 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pclo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473931,143,872 - 31,448,524 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pclo
19951 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1062
Count of miRNA genes:431
Interacting mature miRNAs:479
Transcripts:ENSMUST00000030691, ENSMUST00000182407, ENSMUST00000182426, ENSMUST00000182895, ENSMUST00000182915
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
4141234Pbwg14_mpostnatal body weight growth 14 (mouse)Not determined5121273552Mouse
12738412Lfibq4_mliver fibrosis QTL 4 (mouse)5315000020799180Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1301468Eye1_meye weight 1 (mouse)Not determined5121929650Mouse
10412081Bwq13_mbody weight QTL 13 (mouse)Not determined5123606323Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
13442491Mecth1_mmechanosensation threshold 1 (mouse)5451800019834998Mouse
12904958Gmmq8_mgastrocnemius muscle mass QTL 8 (mouse)5129421124Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse

Markers in Region
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003955647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003955648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003955649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003955650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB083477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB083478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB093247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC144480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC144625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF181269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI852175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI852499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF410094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y19185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y19186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000030691   ⟹   ENSMUSP00000030691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl514,564,932 - 14,913,473 (+)Ensembl
GRCm38.p6 Ensembl514,514,918 - 14,863,459 (+)Ensembl
Ensembl Acc Id: ENSMUST00000182407   ⟹   ENSMUSP00000138419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl514,564,932 - 14,846,007 (+)Ensembl
GRCm38.p6 Ensembl514,514,918 - 14,795,993 (+)Ensembl
Ensembl Acc Id: ENSMUST00000182426
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl514,565,007 - 14,910,198 (+)Ensembl
GRCm38.p6 Ensembl514,514,993 - 14,860,184 (+)Ensembl
Ensembl Acc Id: ENSMUST00000182915   ⟹   ENSMUSP00000138607
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl514,730,877 - 14,846,018 (+)Ensembl
GRCm38.p6 Ensembl514,680,863 - 14,796,004 (+)Ensembl
RefSeq Acc Id: NM_001110796   ⟹   NP_001104266
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,932 - 14,846,056 (+)NCBI
GRCm38514,514,918 - 14,796,042 (+)NCBI
MGSCv37514,514,918 - 14,863,459 (+)RGD
Celera1224,890,712 - 25,239,859 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011995   ⟹   NP_036125
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,932 - 14,913,473 (+)NCBI
GRCm38514,514,918 - 14,863,459 (+)NCBI
MGSCv37514,514,918 - 14,863,459 (+)RGD
Celera1224,890,712 - 25,239,859 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503582   ⟹   XP_006503645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,924 - 14,913,479 (+)NCBI
GRCm38514,514,916 - 14,863,465 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006503583   ⟹   XP_006503646
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,924 - 14,909,926 (+)NCBI
GRCm38514,514,916 - 14,859,912 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006503584   ⟹   XP_006503647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,924 - 14,913,479 (+)NCBI
GRCm38514,514,916 - 14,863,465 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165145   ⟹   XP_036021038
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,924 - 14,913,479 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165146   ⟹   XP_036021039
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,924 - 14,845,111 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003955647
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,924 - 14,913,479 (+)NCBI
GRCm38514,514,916 - 14,858,829 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003955648
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,924 - 14,913,479 (+)NCBI
GRCm38514,514,917 - 14,858,829 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003955649
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,565,236 - 14,913,479 (+)NCBI
GRCm38514,514,906 - 14,858,829 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003955650
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,924 - 14,913,479 (+)NCBI
GRCm38514,514,916 - 14,858,829 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942517
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,924 - 14,913,479 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942518
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,924 - 14,905,599 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942519
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39514,564,924 - 14,913,479 (+)NCBI
Sequence:
RefSeq Acc Id: NP_036125   ⟸   NM_011995
- Peptide Label: isoform 1
- UniProtKB: Q9QYX6 (UniProtKB/Swiss-Prot),   Q8CF92 (UniProtKB/Swiss-Prot),   Q8CF91 (UniProtKB/Swiss-Prot),   E9QK94 (UniProtKB/Swiss-Prot),   Q9QZJ0 (UniProtKB/Swiss-Prot),   Q9QYX7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001104266   ⟸   NM_001110796
- Peptide Label: isoform 2
- UniProtKB: Q9QYX7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006503645   ⟸   XM_006503582
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006503646   ⟸   XM_006503583
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006503647   ⟸   XM_006503584
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSMUSP00000138607   ⟸   ENSMUST00000182915
Ensembl Acc Id: ENSMUSP00000030691   ⟸   ENSMUST00000030691
Ensembl Acc Id: ENSMUSP00000138419   ⟸   ENSMUST00000182407
RefSeq Acc Id: XP_036021038   ⟸   XM_036165145
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036021039   ⟸   XM_036165146
- Peptide Label: isoform X5
Protein Domains
C2   PDZ

Promoters
RGD ID:6838008
Promoter ID:MM_KWN:41414
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:ENSMUST00000030691,   ENSMUST00000071768,   ENSMUST00000115309,   NM_001110796,   NM_011995,   UC008WMG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36514,514,844 - 14,515,344 (+)MPROMDB
RGD ID:6886012
Promoter ID:EPDNEW_M6457
Type:initiation region
Name:Pclo_1
Description:Mus musculus piccolo , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38514,514,977 - 14,515,037EPDNEW
RGD ID:6838009
Promoter ID:MM_KWN:41416
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC008WMJ.1,   UC008WMK.1,   UC008WML.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36514,682,016 - 14,682,516 (+)MPROMDB
RGD ID:6847933
Promoter ID:MM_ACW:37060
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:PCLO.HSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36514,713,201 - 14,713,701 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1349390 AgrOrtholog
Ensembl Genes ENSMUSG00000061601 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030691 ENTREZGENE
  ENSMUST00000030691.17 UniProtKB/Swiss-Prot
  ENSMUST00000182407 ENTREZGENE
  ENSMUST00000182407.8 UniProtKB/Swiss-Prot
  ENSMUST00000182426 ENTREZGENE
  ENSMUST00000182915.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot
InterPro C2_Ca-dep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PCLO_FYVE1 UniProtKB/Swiss-Prot
  PDZ UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Presynaptic_Scaffold_Bsn/Pclo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot
  Znf_piccolo UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
KEGG Report mmu:26875 UniProtKB/Swiss-Prot
MGD MGI:1349390 ENTREZGENE
NCBI Gene 26875 ENTREZGENE
PANTHER PICCOLO/BASSOON UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14113:SF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-piccolo UniProtKB/Swiss-Prot
PhenoGen Pclo PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP FYVE_PHD_ZnF UniProtKB/Swiss-Prot
  PDZ UniProtKB/Swiss-Prot
  SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
UniProt E9QK94 ENTREZGENE
  PCLO_MOUSE UniProtKB/Swiss-Prot
  Q8CF91 ENTREZGENE
  Q8CF92 ENTREZGENE
  Q8CHE8_MOUSE UniProtKB/TrEMBL
  Q9QYX6 ENTREZGENE
  Q9QYX7 ENTREZGENE
  Q9QZJ0 ENTREZGENE
  S4R2E0_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9QK94 UniProtKB/Swiss-Prot
  Q8CF91 UniProtKB/Swiss-Prot
  Q8CF92 UniProtKB/Swiss-Prot
  Q9QYX6 UniProtKB/Swiss-Prot
  Q9QZJ0 UniProtKB/Swiss-Prot