Nup210 (nucleoporin 210) - Rat Genome Database

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Gene: Nup210 (nucleoporin 210) Rattus norvegicus
Analyze
Symbol: Nup210
Name: nucleoporin 210
RGD ID: 69339
Description: Involved in protein-containing complex assembly. Predicted to be located in nuclear envelope. Predicted to be part of nuclear pore. Orthologous to human NUP210 (nucleoporin 210); PARTICIPATES IN RNA transport pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: nuclear envelope pore membrane protein POM 210; nuclear pore membrane glycoprotein 210; nuclear pore protein gp210; nucleoporin Nup210; Pom210; pore membrane protein of 210 kDa
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,068,736 - 125,167,238 (-)NCBIGRCr8
mRatBN7.24123,511,558 - 123,609,874 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4123,511,559 - 123,609,874 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4128,979,110 - 129,077,044 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04124,753,553 - 124,851,493 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04123,378,139 - 123,476,053 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04122,643,952 - 122,741,322 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4122,644,135 - 122,741,110 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,804,454 - 187,901,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,189,612 - 125,285,493 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14125,434,092 - 125,529,974 (-)NCBI
Celera4112,435,032 - 112,530,305 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-dinitrotoluene  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxynon-2-enal  (ISO)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aminoglutethimide  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
fenthion  (ISO)
fipronil  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
indinavir  (ISO)
ivermectin  (ISO)
lamivudine  (ISO)
lead diacetate  (ISO)
manganese(II) chloride  (EXP)
methapyrilene  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
saquinavir  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
thapsigargin  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Biochemical characterization of nuclear pore complex protein gp210 oligomers. Favreau C, etal., Eur J Biochem 2001 Jul;268(14):3883-9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
10. Primary structure analysis of an integral membrane glycoprotein of the nuclear pore. Wozniak RW, etal., J Cell Biol 1989 Jun;108(6):2083-92.
11. Integral membrane proteins of the nuclear envelope are dispersed throughout the endoplasmic reticulum during mitosis. Yang L, etal., J Cell Biol. 1997 Jun 16;137(6):1199-210.
Additional References at PubMed
PMID:1281815   PMID:8672508   PMID:14697343   PMID:17559836   PMID:19946888  


Genomics

Comparative Map Data
Nup210
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,068,736 - 125,167,238 (-)NCBIGRCr8
mRatBN7.24123,511,558 - 123,609,874 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4123,511,559 - 123,609,874 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4128,979,110 - 129,077,044 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04124,753,553 - 124,851,493 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04123,378,139 - 123,476,053 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04122,643,952 - 122,741,322 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4122,644,135 - 122,741,110 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,804,454 - 187,901,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,189,612 - 125,285,493 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14125,434,092 - 125,529,974 (-)NCBI
Celera4112,435,032 - 112,530,305 (-)NCBICelera
Cytogenetic Map4q34NCBI
NUP210
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38313,316,235 - 13,420,322 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl313,316,235 - 13,420,322 (-)EnsemblGRCh38hg38GRCh38
GRCh37313,357,735 - 13,461,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36313,332,737 - 13,436,809 (-)NCBINCBI36Build 36hg18NCBI36
Build 34313,332,736 - 13,436,809NCBI
Celera313,295,991 - 13,400,071 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef313,291,073 - 13,394,965 (-)NCBIHuRef
CHM1_1313,307,763 - 13,411,847 (-)NCBICHM1_1
T2T-CHM13v2.0313,316,581 - 13,420,679 (-)NCBIT2T-CHM13v2.0
Nup210
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,990,049 - 91,095,920 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl690,990,050 - 91,093,811 (-)EnsemblGRCm39 Ensembl
GRCm38691,013,067 - 91,118,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl691,013,068 - 91,116,829 (-)EnsemblGRCm38mm10GRCm38
MGSCv37690,963,061 - 91,066,820 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36690,978,574 - 91,082,298 (-)NCBIMGSCv36mm8
Celera692,903,568 - 93,007,504 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.3NCBI
Nup210
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542912,961,665 - 13,043,214 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542912,907,943 - 13,041,819 (+)NCBIChiLan1.0ChiLan1.0
NUP210
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2213,295,371 - 13,399,169 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1313,300,137 - 13,403,931 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0313,236,064 - 13,339,807 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1313,580,317 - 13,663,589 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl313,581,763 - 13,664,011 (-)Ensemblpanpan1.1panPan2
NUP210
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1203,635,355 - 3,740,689 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl203,636,476 - 3,721,971 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha203,675,930 - 3,781,081 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0203,658,057 - 3,763,299 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1203,377,191 - 3,482,410 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0203,699,701 - 3,804,881 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0203,664,739 - 3,770,023 (-)NCBIUU_Cfam_GSD_1.0
Nup210
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494219,453,787 - 19,494,454 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936898201,392 - 237,699 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936898196,545 - 237,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP210
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1370,917,477 - 71,007,271 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11370,917,464 - 71,007,273 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21378,614,272 - 78,704,936 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP210
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12249,299,689 - 49,409,508 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041117,087,843 - 117,193,138 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup210
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479612,725,798 - 12,826,207 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479612,725,808 - 12,825,793 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nup210
489 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:123
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000008888
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat

Markers in Region
RH128192  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24123,511,544 - 123,511,827 (+)MAPPERmRatBN7.2
mRatBN7.24123,511,632 - 123,511,827 (+)MAPPERmRatBN7.2
Rnor_6.04122,644,027 - 122,644,403NCBIRnor6.0
Rnor_6.04122,644,209 - 122,644,403NCBIRnor6.0
Rnor_5.04187,901,187 - 187,901,563UniSTSRnor5.0
Rnor_5.04187,901,187 - 187,901,381UniSTSRnor5.0
RGSC_v3.44125,189,686 - 125,189,880UniSTSRGSC3.4
Celera4112,435,106 - 112,435,300UniSTS
Cytogenetic Map4q34UniSTS
STS-Z40910  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21156,151,436 - 156,151,493 (+)MAPPERmRatBN7.2
Rnor_6.01166,866,022 - 166,866,078NCBIRnor6.0
Rnor_5.01173,055,736 - 173,055,792UniSTSRnor5.0
Rnor_5.04187,866,146 - 187,866,550UniSTSRnor5.0
RGSC_v3.41159,246,208 - 159,246,264UniSTSRGSC3.4
Celera1154,230,077 - 154,230,133UniSTS
Cytogenetic Map4q34UniSTS
Cytogenetic Map1q32UniSTS
UniSTS:224278  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24123,543,954 - 123,544,159 (+)MAPPERmRatBN7.2
Rnor_6.04122,675,217 - 122,675,421NCBIRnor6.0
Rnor_5.04187,870,169 - 187,870,373UniSTSRnor5.0
RGSC_v3.44125,219,576 - 125,219,780UniSTSRGSC3.4
Celera4112,464,435 - 112,464,639UniSTS
Cytogenetic Map4q34UniSTS
AI836801  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.04187,901,234 - 187,901,329UniSTSRnor5.0
Rnor_5.04187,901,234 - 187,901,511UniSTSRnor5.0
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000008888   ⟹   ENSRNOP00000008888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4123,511,559 - 123,609,874 (-)Ensembl
Rnor_6.0 Ensembl4122,644,135 - 122,741,110 (-)Ensembl
RefSeq Acc Id: NM_053322   ⟹   NP_445774
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84125,068,736 - 125,167,047 (-)NCBI
mRatBN7.24123,511,558 - 123,609,874 (-)NCBI
Rnor_6.04122,644,135 - 122,741,110 (-)NCBI
Rnor_5.04187,804,454 - 187,901,638 (+)NCBI
RGSC_v3.44125,189,612 - 125,285,493 (-)RGD
Celera4112,435,032 - 112,530,305 (-)RGD
Sequence:
RefSeq Acc Id: XM_063286648   ⟹   XP_063142718
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84125,068,736 - 125,167,238 (-)NCBI
RefSeq Acc Id: XM_063286649   ⟹   XP_063142719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84125,068,736 - 125,167,238 (-)NCBI
Protein Sequences
Protein RefSeqs NP_445774 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142718 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142719 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA68759 (Get FASTA)   NCBI Sequence Viewer  
  EDL91358 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000008888.3
GenBank Protein P11654 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445774   ⟸   NM_053322
- Peptide Label: precursor
- UniProtKB: P11654 (UniProtKB/Swiss-Prot),   A6IB90 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008888   ⟸   ENSRNOT00000008888
RefSeq Acc Id: XP_063142719   ⟸   XM_063286649
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142718   ⟸   XM_063286648
- Peptide Label: isoform X1
Protein Domains
BIG2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P11654-F1-model_v2 AlphaFold P11654 1-1886 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693246
Promoter ID:EPDNEW_R3771
Type:multiple initiation site
Name:Nup210_1
Description:nucleoporin 210
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04122,741,102 - 122,741,162EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69339 AgrOrtholog
BioCyc Gene G2FUF-43727 BioCyc
Ensembl Genes ENSRNOG00000005390 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000008888.5 UniProtKB/Swiss-Prot
InterPro Big_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Invasin/intimin_cell_adhesion UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:58958 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 58958 ENTREZGENE
PANTHER NUCLEAR PORE MEMBRANE GLYCOPROTEIN 210 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam Big_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUP210_Ig7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nup210 PhenoGen
RatGTEx ENSRNOG00000005390 RatGTEx
SMART BID_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Invasin/intimin cell-adhesion fragments UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
TIGR TC205689
UniProt A6IB90 ENTREZGENE, UniProtKB/TrEMBL
  P11654 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-18 Nup210  nucleoporin 210  Pom210  nuclear pore membrane glycoprotein 210  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Pom210  nuclear pore membrane glycoprotein 210      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_function may constitute a luminal submembranous protein skeleton 724456