a (nonagouti) - Rat Genome Database

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Gene: a (nonagouti) Mus musculus
Analyze
Symbol: a
Name: nonagouti
RGD ID: 69200
MGI Page MGI
Description: Enables type 3 melanocortin receptor binding activity and type 4 melanocortin receptor binding activity. Acts upstream of or within several processes, including adult feeding behavior; melanosome organization; and melanosome transport. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in forelimb epithelium; hair bulb; hindlimb epithelium; and skin. Used to study abdominal obesity-metabolic syndrome 1; obesity; and type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in pigmentation disease. Orthologous to human ASIP (agouti signaling protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A; ago; agouti coat color protein; agouti signal protein; agouti switch protein; agouti-signaling protein; As; ASIP; ASP; non-agouti
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392154,792,519 - 154,892,932 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2154,633,322 - 154,892,932 (+)EnsemblGRCm39 Ensembl
GRCm382154,950,599 - 155,051,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,018,266 - 155,027,104 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2154,791,402 - 155,051,012 (+)EnsemblGRCm38mm10GRCm38
MGSCv372154,839,306 - 154,876,748 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362154,705,018 - 154,742,423 (+)NCBIMGSCv36mm8
Celera2160,940,588 - 160,977,934 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map276.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adrenal gland x-zone morphology  (IAGP)
abnormal autopod morphology  (IAGP)
abnormal autopod rotation  (IAGP)
abnormal carpal bone morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal choroid melanin granule morphology  (IAGP)
abnormal choroid pigmentation  (IAGP)
abnormal coat appearance  (IAGP)
abnormal coat/hair pigmentation  (IAGP)
abnormal dorsoventral coat patterning  (IAGP)
abnormal eating behavior  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal epigenetic regulation of gene expression  (IAGP)
abnormal eye pigmentation  (IAGP)
abnormal food intake  (IAGP)
abnormal forelimb morphology  (IAGP)
abnormal glomerular mesangium morphology  (IAGP)
abnormal hair follicle melanin granule distribution  (IAGP)
abnormal hair follicle melanin granule morphology  (IAGP)
abnormal hair follicle melanin granule shape  (IAGP)
abnormal hair follicle melanocyte morphology  (IAGP)
abnormal hair follicle melanogenesis  (IAGP)
abnormal hair follicle pheomelanosome pheomelanin content  (IAGP)
abnormal hair shaft melanin granule distribution  (IAGP)
abnormal hair shaft melanin granule morphology  (IEA)
abnormal hair shaft morphology  (IAGP)
abnormal hindlimb morphology  (IAGP)
abnormal inflammatory response  (IAGP)
abnormal iris pigmentation  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal kidney physiology  (IAGP)
abnormal lateral geniculate nucleus morphology  (IAGP)
abnormal lateral ventricle morphology  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal melanocyte morphology  (IAGP)
abnormal melanogenesis  (IAGP)
abnormal melanosome morphology  (IAGP)
abnormal pancreatic islet morphology  (IAGP)
abnormal patella morphology  (IAGP)
abnormal pinna hair pigmentation  (IAGP)
abnormal radius morphology  (IAGP)
abnormal red blood cell deformability  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal renal tubule morphology  (IAGP)
abnormal retina ganglion cell morphology  (IAGP)
abnormal retina melanin granule morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal skin morphology  (IEA)
abnormal skin pigmentation  (IAGP)
abnormal tail hair pigmentation  (IEA)
abnormal tail pigmentation  (IAGP)
abnormal tarsal bone morphology  (IAGP)
abnormal ulna morphology  (IAGP)
abnormal ventral coat pigmentation  (IAGP)
abnormal vitreous body morphology  (IEA)
abnormal xenobiotic metabolism  (IAGP)
absent choroid plexus  (IAGP)
absent coat pigmentation  (IAGP)
absent eye pigmentation  (IAGP)
absent fibula  (IAGP)
absent olfactory bulb  (IAGP)
anisocytosis  (IAGP)
atherosclerotic lesions  (IAGP)
brachydactyly  (IAGP)
broad nasal bridge  (IAGP)
cataract  (IEA)
darkened coat color  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased circulating adiponectin level  (IAGP)
decreased circulating glucose level  (IAGP)
decreased circulating pituitary hormone level  (IAGP)
decreased ear pigmentation  (IAGP)
decreased eye pigmentation  (IAGP)
decreased gonadal fat pad weight  (IAGP)
decreased incidence of induced tumors  (IAGP)
decreased liver weight  (IAGP)
decreased locomotor activity  (IAGP)
decreased platelet ADP level  (IAGP)
decreased platelet ATP level  (IAGP)
decreased platelet dense granule number  (IAGP)
decreased platelet serotonin level  (IAGP)
decreased skin pigmentation  (IEA)
decreased susceptibility to atherosclerosis  (IAGP)
decreased tail pigmentation  (IEA)
degranulated pancreatic beta cells  (IAGP)
dilated renal tubule  (IAGP)
dilated ureter  (IAGP)
diluted coat color  (IAGP)
elliptocytosis  (IAGP)
embryonic growth retardation  (IEA)
embryonic lethality  (IEA)
embryonic lethality at implantation, complete penetrance  (IEA)
embryonic lethality between implantation and placentation, complete penetrance  (IEA)
enlarged hair follicle melanin granules  (IEA)
exencephaly  (IAGP)
expanded mesangial matrix  (IAGP)
fused carpal bones  (IAGP)
fused tarsal bones  (IAGP)
genetic imprinting  (IAGP)
glomerulosclerosis  (IAGP)
hydronephrosis  (IAGP)
hydroureter  (IAGP)
hyperglycemia  (IAGP)
hypopigmentation  (IAGP)
impaired glucose tolerance  (IAGP)
improved glucose tolerance  (IAGP)
incomplete rostral neuropore closure  (IAGP)
increased bleeding time  (IAGP)
increased body length  (IAGP)
increased body weight  (IAGP)
increased brown adipose tissue amount  (IAGP)
increased circulating cholesterol level  (IAGP)
increased circulating erythropoietin level  (IAGP)
increased circulating insulin level  (IAGP)
increased circulating leptin level  (IAGP)
increased circulating triglyceride level  (IAGP)
increased food intake  (IAGP)
increased gonadal fat pad weight  (IAGP)
increased hematocrit  (IAGP)
increased inguinal fat pad weight  (IAGP)
increased liver weight  (IAGP)
increased locomotor activity  (IAGP)
increased mean corpuscular volume  (IAGP)
increased monocyte cell number  (IAGP)
increased percent body fat/body weight  (IAGP)
increased renal glomerulus basement membrane thickness  (IAGP)
increased retroperitoneal fat pad weight  (IAGP)
increased susceptibility to weight gain  (IAGP)
increased total body fat amount  (IAGP)
increased tumor incidence  (IAGP)
increased urine glucose level  (IAGP)
insulin resistance  (IAGP)
irregular coat pigmentation  (IAGP)
large mandible  (IAGP)
lowered ear position  (IAGP)
macrocytosis  (IAGP)
maternal effect  (IAGP)
maternal imprinting  (IEA)
mottled coat  (IAGP)
narrow eye opening  (IAGP)
obese  (IAGP)
ocular hypertelorism  (IAGP)
oligodactyly  (IAGP)
phenotypic reversion  (IAGP)
polycythemia  (IAGP)
polyphagia  (IAGP)
prenatal lethality  (IAGP)
radius hypoplasia  (IAGP)
reduced hair shaft melanin granule number  (IEA)
renal cast  (IAGP)
renal hypoplasia  (IAGP)
reticulocytosis  (IAGP)
short hair  (IAGP)
shortened head  (IAGP)
single kidney  (IAGP)
small kidney  (IEA)
syndactyly  (IAGP)
synostosis  (IAGP)
variable body spotting  (IAGP)
variegated coat color  (IAGP)
variegated eye pigmentation pattern  (IEA)
white spotting  (IAGP)
yellow coat color  (IAGP)
Experimental Data Annotations     Click to see Annotation Detail View

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. Neomorphic agouti mutations in obese yellow mice. Duhl DM, etal., Nat Genet. 1994 Sep;8(1):59-65.
2. Glucose metabolism and insulin sensitivity in transgenic mice overexpressing leptin with lethal yellow agouti mutation: usefulness of leptin for the treatment of obesity-associated diabetes. Masuzaki H, etal., Diabetes. 1999 Aug;48(8):1615-22.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. The critical role of the melanocortin system in the control of energy balance. Seeley RJ, etal., Annu Rev Nutr 2004;24:133-49.
10. Agouti expression in human adipose tissue: functional consequences and increased expression in type 2 diabetes. Smith SR, etal., Diabetes. 2003 Dec;52(12):2914-22.
Additional References at PubMed
PMID:55435   PMID:102659   PMID:103464   PMID:107359   PMID:176891   PMID:178819   PMID:446837   PMID:489949   PMID:640377   PMID:670858   PMID:744871   PMID:781177  
PMID:797312   PMID:834144   PMID:970100   PMID:979138   PMID:1001879   PMID:1090472   PMID:1126628   PMID:1133851   PMID:1204945   PMID:1278673   PMID:1292016   PMID:1351769  
PMID:1378547   PMID:1409439   PMID:1409442   PMID:1427845   PMID:1450513   PMID:1473152   PMID:1611218   PMID:1628697   PMID:1629784   PMID:1639401   PMID:1673105   PMID:1685142  
PMID:1774064   PMID:1794923   PMID:1809096   PMID:1896452   PMID:1940283   PMID:1970329   PMID:1970330   PMID:1971250   PMID:1999355   PMID:2072972   PMID:2137249   PMID:2166945  
PMID:2320577   PMID:2338144   PMID:2338491   PMID:2347591   PMID:2379821   PMID:2383242   PMID:2422116   PMID:2426195   PMID:2443580   PMID:2446417   PMID:2484712   PMID:2511568  
PMID:2566558   PMID:2570033   PMID:2571572   PMID:2759422   PMID:2793182   PMID:2822532   PMID:2878046   PMID:2884164   PMID:2889668   PMID:2993648   PMID:3038074   PMID:3149717  
PMID:3180219   PMID:3227730   PMID:3297105   PMID:3301647   PMID:3443293   PMID:3666442   PMID:3754305   PMID:3781244   PMID:3794606   PMID:3971387   PMID:4065569   PMID:4322934  
PMID:4405515   PMID:4405752   PMID:4436533   PMID:4448905   PMID:4558326   PMID:4631622   PMID:4634048   PMID:4818266   PMID:4837306   PMID:4847754   PMID:5059196   PMID:5340356  
PMID:5365619   PMID:5468422   PMID:5480943   PMID:5556294   PMID:5558564   PMID:5703376   PMID:5713631   PMID:5726144   PMID:5796860   PMID:5798139   PMID:5902512   PMID:5962396  
PMID:5968639   PMID:6096267   PMID:6159249   PMID:6174441   PMID:6242882   PMID:6296870   PMID:6300845   PMID:6575211   PMID:6595305   PMID:6609359   PMID:6626148   PMID:6626150  
PMID:6690234   PMID:6732748   PMID:6776948   PMID:6863898   PMID:6952244   PMID:6961423   PMID:6971254   PMID:7004955   PMID:7077265   PMID:7171128   PMID:7479744   PMID:7547977  
PMID:7588057   PMID:7597044   PMID:7635290   PMID:7635291   PMID:7665913   PMID:7673350   PMID:7683307   PMID:7719019   PMID:7751596   PMID:7757071   PMID:7761389   PMID:7761391  
PMID:7761392   PMID:7806233   PMID:7846052   PMID:7871591   PMID:7873877   PMID:7873878   PMID:7905852   PMID:7926745   PMID:7935841   PMID:7937887   PMID:7949735   PMID:7959775  
PMID:7976166   PMID:7976186   PMID:7980472   PMID:7982562   PMID:8001130   PMID:8039608   PMID:8050375   PMID:8075499   PMID:8082833   PMID:8094303   PMID:8096488   PMID:8100767  
PMID:8108470   PMID:8111126   PMID:8111131   PMID:8118101   PMID:8125260   PMID:8145850   PMID:8146154   PMID:8168479   PMID:8177042   PMID:8177043   PMID:8181666   PMID:8202545  
PMID:8206522   PMID:8208738   PMID:8288233   PMID:8307566   PMID:8319910   PMID:8390965   PMID:8449404   PMID:8482578   PMID:8575618   PMID:8603845   PMID:8622953   PMID:8631881  
PMID:8648194   PMID:8772492   PMID:8783939   PMID:8786127   PMID:8789738   PMID:8792607   PMID:8819789   PMID:8827514   PMID:8835533   PMID:8852853   PMID:8878692   PMID:8973143  
PMID:8990120   PMID:9023357   PMID:9036533   PMID:9139806   PMID:9218796   PMID:9238071   PMID:9258683   PMID:9278578   PMID:9278579   PMID:9302271   PMID:9354467   PMID:9374468  
PMID:9394454   PMID:9405382   PMID:9415049   PMID:9450927   PMID:9454589   PMID:9457688   PMID:9462742   PMID:9548375   PMID:9588445   PMID:9616220   PMID:9636156   PMID:9657845  
PMID:9660946   PMID:9665670   PMID:9677380   PMID:9705029   PMID:9707167   PMID:9719460   PMID:9763877   PMID:9770550   PMID:9783148   PMID:9806167   PMID:9831049   PMID:9877102  
PMID:9885188   PMID:9916873   PMID:10218993   PMID:10349636   PMID:10352119   PMID:10395190   PMID:10395195   PMID:10411918   PMID:10431243   PMID:10438476   PMID:10509609   PMID:10545949  
PMID:10702221   PMID:10703894   PMID:10729341   PMID:10733924   PMID:10749990   PMID:10791999   PMID:10894496   PMID:10971147   PMID:10998416   PMID:11015573   PMID:11015588   PMID:11042159  
PMID:11062307   PMID:11073081   PMID:11076861   PMID:11078464   PMID:11137996   PMID:11217851   PMID:11277491   PMID:11758785   PMID:11779807   PMID:11828324   PMID:11861569   PMID:11877467  
PMID:11882520   PMID:11934869   PMID:12012732   PMID:12067905   PMID:12070017   PMID:12086946   PMID:12091495   PMID:12115031   PMID:12163699   PMID:12177191   PMID:12221097   PMID:12401709  
PMID:12438443   PMID:12466851   PMID:12477932   PMID:12533510   PMID:12601169   PMID:12644183   PMID:12652657   PMID:12664076   PMID:12746338   PMID:12752260   PMID:12851309   PMID:12925742  
PMID:12941770   PMID:12943811   PMID:13563791   PMID:13599016   PMID:13877379   PMID:13886198   PMID:14224656   PMID:14242032   PMID:14610273   PMID:14722102   PMID:14724391   PMID:14737183  
PMID:14742740   PMID:14780203   PMID:14802993   PMID:14973438   PMID:15001430   PMID:15014119   PMID:15136142   PMID:15146238   PMID:15181537   PMID:15240797   PMID:15284202   PMID:15296483  
PMID:15312246   PMID:15350225   PMID:15351728   PMID:15371307   PMID:15489334   PMID:15537888   PMID:15589347   PMID:15613686   PMID:15723861   PMID:15779332   PMID:15813941   PMID:15890782  
PMID:15933268   PMID:15982784   PMID:16010031   PMID:16100570   PMID:16141072   PMID:16141073   PMID:16141392   PMID:16172617   PMID:16303964   PMID:16469705   PMID:16557301   PMID:16578176  
PMID:16587414   PMID:16587618   PMID:16604157   PMID:16626633   PMID:16630552   PMID:16638826   PMID:16651465   PMID:16709610   PMID:16723355   PMID:16738056   PMID:16793009   PMID:16807293  
PMID:16880681   PMID:16973729   PMID:17052688   PMID:17082193   PMID:17093086   PMID:17095521   PMID:17097612   PMID:17101998   PMID:17173877   PMID:17192461   PMID:17224327   PMID:17224930  
PMID:17246842   PMID:17247190   PMID:17247200   PMID:17247280   PMID:17247308   PMID:17247639   PMID:17259372   PMID:17374695   PMID:17450140   PMID:17596404   PMID:17611578   PMID:17640161  
PMID:17640995   PMID:17652101   PMID:17673451   PMID:17699809   PMID:17873059   PMID:17878220   PMID:17917378   PMID:17967808   PMID:17975067   PMID:18057101   PMID:18117146   PMID:18149092  
PMID:18172194   PMID:18172198   PMID:18227763   PMID:18246070   PMID:18256323   PMID:18272480   PMID:18278048   PMID:18292187   PMID:18371931   PMID:18436235   PMID:18458149   PMID:18463231  
PMID:18499648   PMID:18502406   PMID:18562673   PMID:18562706   PMID:18769020   PMID:18784302   PMID:18799693   PMID:18821597   PMID:18848976   PMID:18977759   PMID:19041763   PMID:19052722  
PMID:19067046   PMID:19110031   PMID:19168544   PMID:19174519   PMID:19258434   PMID:19280713   PMID:19293329   PMID:19338759   PMID:19401184   PMID:19468077   PMID:19493315   PMID:19525957  
PMID:19631568   PMID:19633656   PMID:19644225   PMID:19649329   PMID:19710465   PMID:19718037   PMID:19828779   PMID:20050919   PMID:20084100   PMID:20089785   PMID:20105240   PMID:20140227  
PMID:20382109   PMID:20413511   PMID:20515643   PMID:20534724   PMID:20577122   PMID:20589901   PMID:20637659   PMID:20671424   PMID:20814419   PMID:20819186   PMID:20856883   PMID:20886595  
PMID:20947764   PMID:20962770   PMID:21195094   PMID:21350176   PMID:21367916   PMID:21427520   PMID:21460229   PMID:21779871   PMID:21873635   PMID:21949658   PMID:22057290   PMID:22128093  
PMID:22423091   PMID:22454293   PMID:22613025   PMID:22869892   PMID:22997338   PMID:23000156   PMID:23201126   PMID:23251662   PMID:23267115   PMID:23437272   PMID:23567972   PMID:23583377  
PMID:23593014   PMID:23762342   PMID:23851689   PMID:23891883   PMID:23902639   PMID:23934127   PMID:24089373   PMID:24170694   PMID:24222351   PMID:24339994   PMID:24520121   PMID:24567370  
PMID:24599260   PMID:24639549   PMID:24647715   PMID:24647794   PMID:24773344   PMID:24859451   PMID:24887517   PMID:24981835   PMID:25136298   PMID:25143355   PMID:25155577   PMID:25191835  
PMID:25236450   PMID:25249463   PMID:25448685   PMID:25491100   PMID:25714464   PMID:25796170   PMID:26361888   PMID:26362633   PMID:26542749   PMID:26953321   PMID:27112447   PMID:27119337  
PMID:27152706   PMID:27322655   PMID:27410475   PMID:27659424   PMID:28117404   PMID:28418585   PMID:28612841   PMID:28771574   PMID:29054595   PMID:29106398   PMID:29113698   PMID:29162828  
PMID:29186686   PMID:29880531   PMID:30188668   PMID:30197081   PMID:30447239   PMID:30862859   PMID:30870482   PMID:30886328   PMID:31023717   PMID:31033437   PMID:31351995   PMID:31396563  
PMID:31649729   PMID:32169841   PMID:32231228   PMID:32459862   PMID:32895383   PMID:32999320   PMID:33367954   PMID:34088954   PMID:34354145   PMID:34462445   PMID:35145074   PMID:35283410  
PMID:36609526   PMID:36933217   PMID:37371543  


Genomics

Comparative Map Data
a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392154,792,519 - 154,892,932 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2154,633,322 - 154,892,932 (+)EnsemblGRCm39 Ensembl
GRCm382154,950,599 - 155,051,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,018,266 - 155,027,104 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl2154,791,402 - 155,051,012 (+)EnsemblGRCm38mm10GRCm38
MGSCv372154,839,306 - 154,876,748 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362154,705,018 - 154,742,423 (+)NCBIMGSCv36mm8
Celera2160,940,588 - 160,977,934 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map276.83NCBI
ASIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382034,186,493 - 34,269,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2034,194,569 - 34,269,344 (+)EnsemblGRCh38hg38GRCh38
GRCh372032,782,368 - 32,857,150 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362032,311,832 - 32,320,809 (+)NCBINCBI36Build 36hg18NCBI36
Build 342032,311,831 - 32,320,809NCBI
Celera2029,597,653 - 29,606,630 (+)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2029,629,973 - 29,638,950 (+)NCBIHuRef
CHM1_12032,749,256 - 32,758,241 (+)NCBICHM1_1
T2T-CHM13v2.02035,912,881 - 35,992,459 (+)NCBIT2T-CHM13v2.0
Asip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83163,933,768 - 164,021,377 (+)NCBIGRCr8
mRatBN7.23143,473,584 - 143,561,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3143,555,696 - 143,561,171 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,341,174 - 147,428,809 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03155,958,462 - 156,046,095 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03153,697,992 - 153,785,636 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03150,492,010 - 150,579,870 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3150,574,473 - 150,579,870 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03156,860,395 - 156,949,277 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43145,445,175 - 145,536,831 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13145,350,796 - 145,442,453 (+)NCBI
Celera3142,203,571 - 142,291,520 (+)NCBICelera
Cytogenetic Map3q41NCBI
Asip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542227,020,386 - 27,057,626 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542227,021,810 - 27,150,339 (-)NCBIChiLan1.0ChiLan1.0
ASIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,987,569 - 39,997,795 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12039,980,671 - 39,990,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02030,583,038 - 30,592,726 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12031,718,169 - 31,727,217 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2031,718,169 - 31,727,217 (+)Ensemblpanpan1.1panPan2
ASIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12423,338,757 - 23,393,913 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2423,354,888 - 23,393,896 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2422,999,470 - 23,041,722 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,041,356 - 24,084,629 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,041,485 - 24,084,612 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12423,334,340 - 23,373,386 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02423,428,191 - 23,467,532 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02423,865,404 - 23,906,575 (+)NCBIUU_Cfam_GSD_1.0
Asip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640172,298,779 - 172,407,882 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365616,341,623 - 6,346,458 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365616,341,667 - 6,346,440 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1737,545,474 - 37,718,779 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11737,542,615 - 37,718,787 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21742,538,122 - 42,686,968 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1238,479,328 - 38,568,756 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605088,288,816 - 88,382,787 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248425,079,499 - 5,084,933 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248425,079,499 - 5,084,933 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in a
2479 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1206
Count of miRNA genes:578
Interacting mature miRNAs:682
Transcripts:ENSMUST00000029123, ENSMUST00000109697, ENSMUST00000130870, ENSMUST00000132342, ENSMUST00000137333, ENSMUST00000148300, ENSMUST00000148402
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
13825247Agoc2_magouti coat color QTL 2 (mouse)2151841920159841920Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
1558842Tailq2_mtail length QTL 2 (mouse)Not determined2151640941162737074Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151640941164119146Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357862Epfq1_mepididymal fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152699221169117924Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301588Hrec_mhemotopoietic response to early cytokines (mouse)Not determined2154553217159428450Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1558852Gnf2_mgrowth and fatness 2 (mouse)Not determined2152699221162197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
4141033Wg2d_mweight gain in high growth mice 2d (mouse)Not determined143773445160303008Mouse
1357772Scfq1_msubcutaneous fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
13524521Bodwtq2_mbody wweight QTL 2 (mouse)2153456184156386184Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13504830Bacsq1_mbaculum shape QTL 1 (mouse)2145716184161016184Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse

Markers in Region
L06451  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382155,050,864 - 155,050,985UniSTSGRCm38
MGSCv372154,876,600 - 154,876,721UniSTSGRCm37
Celera2160,977,786 - 160,977,907UniSTS
Cytogenetic Map2H1UniSTS
cM Map289.0UniSTS
Whitehead_YAC2 UniSTS
UniSTS:234565  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382155,040,618 - 155,040,840UniSTSGRCm38
MGSCv372154,866,354 - 154,866,576UniSTSGRCm37
Celera2160,967,542 - 160,967,762UniSTS
Cytogenetic Map2H1UniSTS
cM Map289.0UniSTS
AU021883  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382155,040,551 - 155,040,802UniSTSGRCm38
MGSCv372154,866,287 - 154,866,538UniSTSGRCm37
Celera2160,967,475 - 160,967,724UniSTS
Cytogenetic Map2H1UniSTS
cM Map288.0UniSTS
Whitehead/MRC_RH21814.18UniSTS
PMC344181P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382155,045,612 - 155,046,347UniSTSGRCm38
MGSCv372154,871,348 - 154,872,083UniSTSGRCm37
Celera2160,972,534 - 160,973,269UniSTS
Cytogenetic Map2H1UniSTS
cM Map289.0UniSTS
a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2H1UniSTS
cM Map289.0UniSTS
cM Map288.8UniSTS
Raly  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382154,791,402 - 154,791,548UniSTSGRCm38
MGSCv372154,617,138 - 154,617,284UniSTSGRCm37
Celera2160,719,330 - 160,719,476UniSTS
Cytogenetic Map2H1UniSTS
cM Map288.8UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_015770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF540973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF540974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF540975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L06451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L06452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L06941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L28700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L33247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L33248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC309105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC309106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC309107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC309108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC309109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC309110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC309111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S63413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S70320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S70326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S70394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S74479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S74489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S74493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000029123   ⟹   ENSMUSP00000029123
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2154,855,451 - 154,892,932 (+)Ensembl
GRCm38.p6 Ensembl2155,013,531 - 155,051,012 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109697   ⟹   ENSMUSP00000105319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2154,793,139 - 154,892,931 (+)Ensembl
GRCm38.p6 Ensembl2154,951,219 - 155,051,011 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130870   ⟹   ENSMUSP00000122157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2154,860,186 - 154,869,024 (+)Ensembl
GRCm38.p6 Ensembl2155,018,266 - 155,027,104 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132342
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2154,793,100 - 154,887,591 (+)Ensembl
GRCm38.p6 Ensembl2154,951,180 - 155,045,671 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137333   ⟹   ENSMUSP00000122261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2154,633,322 - 154,889,647 (+)Ensembl
GRCm38.p6 Ensembl2154,791,402 - 155,047,727 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2154,889,535 - 154,892,931 (+)Ensembl
GRCm38.p6 Ensembl2155,047,615 - 155,051,011 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148402   ⟹   ENSMUSP00000121072
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2154,855,392 - 154,892,552 (+)Ensembl
GRCm38.p6 Ensembl2155,013,472 - 155,050,632 (+)Ensembl
RefSeq Acc Id: NM_015770   ⟹   NP_056585
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,855,490 - 154,892,932 (+)NCBI
GRCm382155,013,570 - 155,051,012 (+)NCBI
MGSCv372154,839,306 - 154,876,748 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011239689   ⟹   XP_011237991
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,794,096 - 154,866,103 (+)NCBI
GRCm382154,952,176 - 155,024,183 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011239690   ⟹   XP_011237992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,794,126 - 154,868,384 (+)NCBI
GRCm382154,952,206 - 155,026,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011239691   ⟹   XP_011237993
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,794,101 - 154,892,932 (+)NCBI
GRCm382154,952,181 - 155,051,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319110   ⟹   XP_017174599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,792,519 - 154,868,623 (+)NCBI
GRCm382154,950,599 - 155,026,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319112   ⟹   XP_017174601
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,793,256 - 154,868,623 (+)NCBI
GRCm382154,951,336 - 155,026,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319115   ⟹   XP_017174604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,793,257 - 154,868,623 (+)NCBI
GRCm382154,951,336 - 155,026,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319117   ⟹   XP_017174606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,793,257 - 154,868,623 (+)NCBI
GRCm382154,951,336 - 155,026,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319119   ⟹   XP_017174608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,793,258 - 154,868,623 (+)NCBI
GRCm382154,951,337 - 155,026,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319120   ⟹   XP_017174609
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,793,257 - 154,868,623 (+)NCBI
GRCm382154,951,337 - 155,026,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319121   ⟹   XP_017174610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,793,260 - 154,868,623 (+)NCBI
GRCm382154,951,340 - 155,026,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251858   ⟹   XP_030107718
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,841,492 - 154,868,623 (+)NCBI
GRCm382154,999,572 - 155,026,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251859   ⟹   XP_030107719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,792,519 - 154,868,623 (+)NCBI
GRCm382154,950,599 - 155,026,464 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251860   ⟹   XP_030107720
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392154,792,519 - 154,868,623 (+)NCBI
GRCm382154,950,599 - 155,026,464 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_056585 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237991 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237992 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237993 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174599 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174601 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174604 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174606 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174608 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174609 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174610 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107718 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107719 (Get FASTA)   NCBI Sequence Viewer  
  XP_030107720 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA15908 (Get FASTA)   NCBI Sequence Viewer  
  AAA37201 (Get FASTA)   NCBI Sequence Viewer  
  AAP19635 (Get FASTA)   NCBI Sequence Viewer  
  AAP19636 (Get FASTA)   NCBI Sequence Viewer  
  AAP19637 (Get FASTA)   NCBI Sequence Viewer  
  AAP31517 (Get FASTA)   NCBI Sequence Viewer  
  AAP31519 (Get FASTA)   NCBI Sequence Viewer  
  AAP31520 (Get FASTA)   NCBI Sequence Viewer  
  EDL06104 (Get FASTA)   NCBI Sequence Viewer  
  EDL06105 (Get FASTA)   NCBI Sequence Viewer  
  EDL06106 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000029123
  ENSMUSP00000029123.3
  ENSMUSP00000105319.2
  ENSMUSP00000121072.2
  ENSMUSP00000122261.2
GenBank Protein Q03288 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_056585   ⟸   NM_015770
- Peptide Label: precursor
- UniProtKB: A2ALT3 (UniProtKB/Swiss-Prot),   Q80ST0 (UniProtKB/Swiss-Prot),   Q03288 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011237991   ⟸   XM_011239689
- Peptide Label: isoform X2
- UniProtKB: A0A510NUK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237993   ⟸   XM_011239691
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011237992   ⟸   XM_011239690
- Peptide Label: isoform X3
- UniProtKB: Q3TZL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174599   ⟸   XM_017319110
- Peptide Label: isoform X1
- UniProtKB: A0A510NUJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174601   ⟸   XM_017319112
- Peptide Label: isoform X1
- UniProtKB: A0A510NUJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174604   ⟸   XM_017319115
- Peptide Label: isoform X1
- UniProtKB: A0A510NUJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174606   ⟸   XM_017319117
- Peptide Label: isoform X1
- UniProtKB: A0A510NUJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174608   ⟸   XM_017319119
- Peptide Label: isoform X1
- UniProtKB: A0A510NUJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174609   ⟸   XM_017319120
- Peptide Label: isoform X1
- UniProtKB: A0A510NUJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017174610   ⟸   XM_017319121
- Peptide Label: isoform X1
- UniProtKB: A0A510NUJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030107719   ⟸   XM_030251859
- Peptide Label: isoform X1
- UniProtKB: A0A510NUJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030107720   ⟸   XM_030251860
- Peptide Label: isoform X1
- UniProtKB: A0A510NUJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030107718   ⟸   XM_030251858
- Peptide Label: isoform X1
- UniProtKB: A0A510NUJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000122157   ⟸   ENSMUST00000130870
RefSeq Acc Id: ENSMUSP00000029123   ⟸   ENSMUST00000029123
RefSeq Acc Id: ENSMUSP00000121072   ⟸   ENSMUST00000148402
RefSeq Acc Id: ENSMUSP00000105319   ⟸   ENSMUST00000109697
RefSeq Acc Id: ENSMUSP00000122261   ⟸   ENSMUST00000137333
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q03288-F1-model_v2 AlphaFold Q03288 1-131 view protein structure
AF-Q3TZL0-F1-model_v2 AlphaFold Q3TZL0 1-686 view protein structure

Promoters
RGD ID:6879332
Promoter ID:EPDNEW_M3117
Type:single initiation site
Name:a_1
Description:Mus musculus nonagouti , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3118  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382154,951,205 - 154,951,265EPDNEW
RGD ID:6879334
Promoter ID:EPDNEW_M3118
Type:single initiation site
Name:a_2
Description:Mus musculus nonagouti , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3117  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382155,013,560 - 155,013,620EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:87853 AgrOrtholog
Ensembl Genes ENSMUSG00000027596 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUSG00000084897 Ensembl
Ensembl Transcript ENSMUST00000029123 ENTREZGENE
  ENSMUST00000029123.3 UniProtKB/Swiss-Prot
  ENSMUST00000109697.8 UniProtKB/Swiss-Prot
  ENSMUST00000137333.8 UniProtKB/TrEMBL
  ENSMUST00000148402.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.200 UniProtKB/TrEMBL
  1.10.1200.30 UniProtKB/TrEMBL
  1.10.150.490 UniProtKB/TrEMBL
  1.10.287.210 UniProtKB/TrEMBL
  1.10.375.10 UniProtKB/TrEMBL
  3.30.70.270 UniProtKB/TrEMBL
  3.90.310.10 UniProtKB/TrEMBL
  4.10.760.10 UniProtKB/Swiss-Prot
  HIV Type 1 Reverse Transcriptase, subunit A, domain 1 UniProtKB/TrEMBL
  Integrase, C-terminal domain superfamily, retroviral UniProtKB/TrEMBL
  Ribonuclease H-like superfamily/Ribonuclease H UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro Agouti UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Agouti_dom UniProtKB/Swiss-Prot
  Agouti_dom_sf UniProtKB/Swiss-Prot
  B_retro_matrix UniProtKB/TrEMBL
  B_retro_matrix_sf UniProtKB/TrEMBL
  DNA/RNA_pol_sf UniProtKB/TrEMBL
  FMuLV_rcpt-bd UniProtKB/TrEMBL
  Gag_p24_C UniProtKB/TrEMBL
  Integrase-like_N UniProtKB/TrEMBL
  Integrase_C_dom_sf_retrovir UniProtKB/TrEMBL
  Integrase_C_retrovir UniProtKB/TrEMBL
  Integrase_cat-core UniProtKB/TrEMBL
  Integrase_Zn-bd_dom_N UniProtKB/TrEMBL
  Retrov_capsid_C UniProtKB/TrEMBL
  Retrov_capsid_N UniProtKB/TrEMBL
  Retrovr_matrix UniProtKB/TrEMBL
  Rev_trsase/Diguanyl_cyclase UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  RNaseH_domain UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
  RT_dom UniProtKB/TrEMBL
  RVT_thumb UniProtKB/TrEMBL
  TLV/ENV_coat_polyprotein UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
KEGG Report mmu:50518 UniProtKB/Swiss-Prot
MGD MGI:87853 ENTREZGENE
NCBI Gene 50518 ENTREZGENE
PANTHER AGOUTI-SIGNALING PROTEIN UniProtKB/Swiss-Prot
  ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 GAG POLYPROTEIN-RELATED UniProtKB/TrEMBL
  ENDOGENOUS RETROVIRUS GROUP K MEMBER POL PROTEIN UniProtKB/TrEMBL
  ENVELOPE POLYPROTEIN UniProtKB/TrEMBL
  IGE-BINDING PROTEIN UniProtKB/TrEMBL
  INTEGRASE-RELATED UniProtKB/TrEMBL
  PTHR10424 UniProtKB/TrEMBL
  PTHR16551 UniProtKB/Swiss-Prot
Pfam Agouti UniProtKB/Swiss-Prot
  Gag_p10 UniProtKB/TrEMBL
  Gag_p24 UniProtKB/TrEMBL
  Gag_p24_C UniProtKB/TrEMBL
  IN_DBD_C UniProtKB/TrEMBL
  Integrase_Zn UniProtKB/TrEMBL
  RNase_H UniProtKB/TrEMBL
  rve UniProtKB/TrEMBL
  RVT_1 UniProtKB/TrEMBL
  RVT_thumb UniProtKB/TrEMBL
  TLV_coat UniProtKB/TrEMBL
  zf-CCHC UniProtKB/TrEMBL
  zf-CCHC_5 UniProtKB/TrEMBL
PhenoGen a PhenoGen
PROSITE AGOUTI_1 UniProtKB/Swiss-Prot
  AGOUTI_2 UniProtKB/Swiss-Prot
  INTEGRASE UniProtKB/TrEMBL
  INTEGRASE_DBD UniProtKB/TrEMBL
  RNASE_H_1 UniProtKB/TrEMBL
  RT_POL UniProtKB/TrEMBL
  ZF_CCHC UniProtKB/TrEMBL
  ZF_INTEGRASE UniProtKB/TrEMBL
SMART Agouti UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP DNA-binding domain of retroviral integrase UniProtKB/TrEMBL
  DNA/RNA polymerases UniProtKB/TrEMBL
  N-terminal Zn binding domain of HIV integrase UniProtKB/TrEMBL
  Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  Ribonuclease H-like UniProtKB/TrEMBL
  SSF47836 UniProtKB/TrEMBL
  SSF47943 UniProtKB/TrEMBL
  SSF49830 UniProtKB/TrEMBL
  SSF57055 UniProtKB/Swiss-Prot
  SSF57756 UniProtKB/TrEMBL
  Virus ectodomain UniProtKB/TrEMBL
UniProt A0A510NUJ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A510NUK5 ENTREZGENE, UniProtKB/TrEMBL
  A2ALT1_MOUSE UniProtKB/TrEMBL
  A2ALT2_MOUSE UniProtKB/TrEMBL
  A2ALT3 ENTREZGENE
  ASIP_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TZL0 ENTREZGENE, UniProtKB/TrEMBL
  Q80ST0 ENTREZGENE
UniProt Secondary A2ALT3 UniProtKB/Swiss-Prot
  Q80ST0 UniProtKB/Swiss-Prot