Rps19 (ribosomal protein S19) - Rat Genome Database

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Gene: Rps19 (ribosomal protein S19) Mus musculus
Analyze
Symbol: Rps19
Name: ribosomal protein S19
RGD ID: 68662
MGI Page MGI
Description: A structural constituent of ribosome. Acts upstream of or within Notch signaling pathway. Part of cytosolic small ribosomal subunit. Is active in synapse. Is expressed in early conceptus and embryo. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia and Diamond-Blackfan anemia 1. Orthologous to human RPS19 (ribosomal protein S19).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S19; Dsk; Dsk3; MGC107694; small ribosomal subunit protein eS19
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm33614   Rps19-ps1   Rps19-ps10   Rps19-ps11   Rps19-ps12   Rps19-ps13   Rps19-ps2   Rps19-ps3   Rps19-ps4   Rps19-ps5   Rps19-ps6   Rps19-ps7   Rps19-ps8   Rps19-ps9  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,584,013 - 24,589,236 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,583,796 - 24,589,231 (+)EnsemblGRCm39 Ensembl
GRCm38724,884,592 - 24,889,811 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl724,884,371 - 24,889,806 (+)EnsemblGRCm38mm10GRCm38
MGSCv37725,669,733 - 25,674,821 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,593,474 - 24,598,562 (+)NCBIMGSCv36mm8
Celera719,500,610 - 19,505,697 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-nitrofluorene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
acetylsalicylic acid  (ISO)
aflatoxin B1  (ISO)
alpha-Zearalanol  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (ISO)
dichlorine  (ISO)
diethylstilbestrol  (ISO)
dihydroartemisinin  (ISO)
doxorubicin  (ISO)
enzalutamide  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
fenbuconazole  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
ivermectin  (ISO)
L-ethionine  (ISO)
lead diacetate  (EXP)
melatonin  (EXP)
Mesaconitine  (ISO)
methapyrilene  (ISO)
methotrexate  (EXP)
methoxychlor  (ISO)
methylparaben  (ISO)
N-nitrosodimethylamine  (ISO)
nimesulide  (ISO)
nitrofen  (ISO)
omeprazole  (ISO)
ozone  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
PhIP  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
resveratrol  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
tungsten  (EXP)
urethane  (ISO)
valproic acid  (EXP)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Nonsense-mediated and nonstop decay of ribosomal protein S19 mRNA in Diamond-Blackfan anemia. Chatr-Aryamontri A, etal., Hum Mutat. 2004 Dec;24(6):526-33.
2. The gene encoding ribosomal protein S19 is mutated in Diamond-Blackfan anaemia. Draptchinskaia N, etal., Nat Genet. 1999 Feb;21(2):169-75.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:10932192   PMID:11042159   PMID:11076861   PMID:12031506   PMID:12393682   PMID:12477932   PMID:12533510   PMID:14610273   PMID:15082795  
PMID:15489334   PMID:15543555   PMID:15703188   PMID:16141072   PMID:16141073   PMID:16289379   PMID:16452087   PMID:16458028   PMID:18495661   PMID:18641651   PMID:18799693   PMID:19155217  
PMID:19333232   PMID:19898770   PMID:20606162   PMID:21267068   PMID:21529712   PMID:21565611   PMID:21677750   PMID:21788341   PMID:21873635   PMID:21989989   PMID:22673621   PMID:23360989  
PMID:24558476   PMID:25329761   PMID:25446530   PMID:25773539   PMID:25901680   PMID:25921334   PMID:26370502   PMID:27424793   PMID:27643579   PMID:28378742   PMID:29017823   PMID:29596840  
PMID:30409884   PMID:30550785   PMID:30595499   PMID:31162944   PMID:31406667   PMID:32325033   PMID:32434143   PMID:32554809   PMID:32620751   PMID:34070742   PMID:34175335   PMID:34242585  
PMID:34752747   PMID:35194044   PMID:36517592  


Genomics

Comparative Map Data
Rps19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,584,013 - 24,589,236 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,583,796 - 24,589,231 (+)EnsemblGRCm39 Ensembl
GRCm38724,884,592 - 24,889,811 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl724,884,371 - 24,889,806 (+)EnsemblGRCm38mm10GRCm38
MGSCv37725,669,733 - 25,674,821 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,593,474 - 24,598,562 (+)NCBIMGSCv36mm8
Celera719,500,610 - 19,505,697 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.41NCBI
RPS19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,860,255 - 41,872,925 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,860,255 - 41,872,925 (+)EnsemblGRCh38hg38GRCh38
GRCh371942,364,325 - 42,376,993 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,055,828 - 47,067,324 (+)NCBINCBI36Build 36hg18NCBI36
Build 341947,055,827 - 47,067,322NCBI
Celera1939,163,675 - 39,175,171 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,795,270 - 38,806,767 (+)NCBIHuRef
CHM1_11942,365,453 - 42,376,951 (+)NCBICHM1_1
T2T-CHM13v2.01944,679,738 - 44,692,405 (+)NCBIT2T-CHM13v2.0
Rps19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,608,408 - 89,614,390 (+)NCBIGRCr8
mRatBN7.2180,480,718 - 80,486,511 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,480,951 - 80,486,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,873,345 - 85,879,047 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,424,173 - 94,429,875 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,629,105 - 87,634,807 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0916,802,280 - 16,807,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,750,928 - 81,756,627 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,007,889 - 83,013,590 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,176,649 - 80,182,351 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,254,777 - 80,260,460 (+)NCBI
Celera174,928,360 - 74,934,062 (+)NCBICelera
Cytogenetic Map1q21NCBI
Rps19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555969,340 - 976,509 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955555969,345 - 976,122 (-)NCBIChiLan1.0ChiLan1.0
RPS19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,965,298 - 47,976,883 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,827,387 - 49,845,848 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,748,604 - 38,760,055 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11947,254,157 - 47,264,953 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1947,254,157 - 47,264,953 (+)Ensemblpanpan1.1panPan2
RPS19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,418,800 - 112,427,445 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,411,281 - 112,427,381 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,855,118 - 111,863,708 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,042,734 - 113,051,324 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,040,851 - 113,051,255 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,596,102 - 112,604,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,232,253 - 112,240,642 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,158,731 - 113,167,322 (-)NCBIUU_Cfam_GSD_1.0
Rps19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934916,221,100 - 16,228,630 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706568,364 - 575,126 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936706568,443 - 575,973 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl650,000,948 - 50,010,341 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1650,003,198 - 50,010,135 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2646,056,524 - 46,063,482 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,067,959 - 36,085,581 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607314,302,605 - 14,313,949 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907810,984 - 818,614 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907811,069 - 818,218 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rps19
172 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1442
Count of miRNA genes:515
Interacting mature miRNAs:613
Transcripts:ENSMUST00000108428, ENSMUST00000108429, ENSMUST00000108430, ENSMUST00000124035, ENSMUST00000129847, ENSMUST00000130335, ENSMUST00000138662, ENSMUST00000146004, ENSMUST00000153451, ENSMUST00000156372
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001360115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF216207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV471616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV577618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU560587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY297002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000108428   ⟹   ENSMUSP00000104066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,584,061 - 24,589,227 (+)Ensembl
GRCm38.p6 Ensembl724,884,636 - 24,889,802 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108429   ⟹   ENSMUSP00000104067
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,584,139 - 24,589,231 (+)Ensembl
GRCm38.p6 Ensembl724,884,714 - 24,889,806 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108430   ⟹   ENSMUSP00000104068
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,583,796 - 24,589,231 (+)Ensembl
GRCm38.p6 Ensembl724,884,371 - 24,889,806 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124035   ⟹   ENSMUSP00000116311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,584,342 - 24,588,397 (+)Ensembl
GRCm38.p6 Ensembl724,884,917 - 24,888,972 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129847   ⟹   ENSMUSP00000138466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,584,058 - 24,589,231 (+)Ensembl
GRCm38.p6 Ensembl724,884,633 - 24,889,806 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130335
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,587,615 - 24,589,229 (+)Ensembl
GRCm38.p6 Ensembl724,888,190 - 24,889,804 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,584,060 - 24,587,184 (+)Ensembl
GRCm38.p6 Ensembl724,884,635 - 24,887,759 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146004
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,588,165 - 24,589,229 (+)Ensembl
GRCm38.p6 Ensembl724,888,740 - 24,889,804 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153451   ⟹   ENSMUSP00000114949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,584,076 - 24,588,375 (+)Ensembl
GRCm38.p6 Ensembl724,884,651 - 24,888,950 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156372   ⟹   ENSMUSP00000120774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,584,238 - 24,588,355 (+)Ensembl
GRCm38.p6 Ensembl724,884,813 - 24,888,930 (+)Ensembl
RefSeq Acc Id: NM_001360115   ⟹   NP_001347044
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,584,242 - 24,589,236 (+)NCBI
GRCm38724,884,913 - 24,889,811 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360116   ⟹   NP_001347045
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,584,013 - 24,589,236 (+)NCBI
GRCm38724,884,676 - 24,889,811 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360118   ⟹   NP_001347047
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,584,013 - 24,589,236 (+)NCBI
GRCm38724,884,676 - 24,889,811 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360119   ⟹   NP_001347048
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,584,013 - 24,589,236 (+)NCBI
GRCm38724,884,592 - 24,889,811 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360125   ⟹   NP_001347054
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,584,013 - 24,589,236 (+)NCBI
GRCm38724,884,592 - 24,889,811 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360128   ⟹   NP_001347057
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,584,013 - 24,589,236 (+)NCBI
GRCm38724,884,592 - 24,889,811 (+)NCBI
Sequence:
RefSeq Acc Id: NM_023133   ⟹   NP_075622
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,584,101 - 24,589,236 (+)NCBI
GRCm38724,884,676 - 24,889,811 (+)NCBI
MGSCv37725,669,733 - 25,674,821 (+)RGD
Celera719,500,610 - 19,505,697 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153408
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,584,013 - 24,589,236 (+)NCBI
GRCm38724,884,592 - 24,889,811 (+)NCBI
Sequence:
RefSeq Acc Id: NR_153409
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,584,017 - 24,589,236 (+)NCBI
GRCm38724,884,592 - 24,889,811 (+)NCBI
Sequence:
RefSeq Acc Id: NP_075622   ⟸   NM_023133
- Peptide Label: isoform a
- UniProtKB: Q5M9J4 (UniProtKB/Swiss-Prot),   Q9CZX8 (UniProtKB/Swiss-Prot),   Q5M9P3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001347048   ⟸   NM_001360119
- Peptide Label: isoform a
- UniProtKB: Q9CZX8 (UniProtKB/Swiss-Prot),   Q5M9J4 (UniProtKB/Swiss-Prot),   Q5M9P3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347057   ⟸   NM_001360128
- Peptide Label: isoform e
RefSeq Acc Id: NP_001347054   ⟸   NM_001360125
- Peptide Label: isoform d
- UniProtKB: Q5M9P3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347047   ⟸   NM_001360118
- Peptide Label: isoform a
- UniProtKB: Q9CZX8 (UniProtKB/Swiss-Prot),   Q5M9J4 (UniProtKB/Swiss-Prot),   Q5M9P3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347045   ⟸   NM_001360116
- Peptide Label: isoform b
- UniProtKB: Q5M9P3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001347044   ⟸   NM_001360115
- Peptide Label: isoform a
- UniProtKB: Q9CZX8 (UniProtKB/Swiss-Prot),   Q5M9J4 (UniProtKB/Swiss-Prot),   Q5M9P3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000116311   ⟸   ENSMUST00000124035
RefSeq Acc Id: ENSMUSP00000104067   ⟸   ENSMUST00000108429
RefSeq Acc Id: ENSMUSP00000104066   ⟸   ENSMUST00000108428
RefSeq Acc Id: ENSMUSP00000104068   ⟸   ENSMUST00000108430
RefSeq Acc Id: ENSMUSP00000138466   ⟸   ENSMUST00000129847
RefSeq Acc Id: ENSMUSP00000114949   ⟸   ENSMUST00000153451
RefSeq Acc Id: ENSMUSP00000120774   ⟸   ENSMUST00000156372

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CZX8-F1-model_v2 AlphaFold Q9CZX8 1-145 view protein structure

Promoters
RGD ID:6892220
Promoter ID:EPDNEW_M9561
Type:initiation region
Name:Rps19_1
Description:Mus musculus ribosomal protein S19 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38724,884,633 - 24,884,693EPDNEW
RGD ID:6841955
Promoter ID:MM_KWN:49400
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108429,   OTTMUST00000055151,   OTTMUST00000055152,   OTTMUST00000055154,   OTTMUST00000055155,   OTTMUST00000055157,   OTTMUST00000055158,   UC009FQR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36725,668,871 - 25,670,092 (+)MPROMDB
RGD ID:6841956
Promoter ID:MM_KWN:49401
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000055159,   OTTMUST00000055160
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36725,672,256 - 25,673,702 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1333780 AgrOrtholog
Ensembl Genes ENSMUSG00000040952 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000108428.8 UniProtKB/TrEMBL
  ENSMUST00000108429 ENTREZGENE
  ENSMUST00000108429.8 UniProtKB/Swiss-Prot
  ENSMUST00000108430 ENTREZGENE
  ENSMUST00000108430.10 UniProtKB/Swiss-Prot
  ENSMUST00000124035.2 UniProtKB/TrEMBL
  ENSMUST00000129847 ENTREZGENE
  ENSMUST00000129847.8 UniProtKB/TrEMBL
  ENSMUST00000153451 ENTREZGENE
  ENSMUST00000153451.9 UniProtKB/TrEMBL
  ENSMUST00000156372 ENTREZGENE
  ENSMUST00000156372.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ribosomal_S19e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S19e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20085 UniProtKB/Swiss-Prot
MGD MGI:1333780 ENTREZGENE
NCBI Gene 20085 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S19 UniProtKB/Swiss-Prot
  40S RIBOSOMAL PROTEIN S19 UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S19 UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S19-RELATED UniProtKB/TrEMBL
  PTHR11710 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S19e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps19 PhenoGen
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  RIBOSOMAL_S19E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Ribosomal_S19e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YUG3_MOUSE UniProtKB/TrEMBL
  D3YUT3_MOUSE UniProtKB/TrEMBL
  D3Z5R8_MOUSE UniProtKB/TrEMBL
  D3Z722_MOUSE UniProtKB/TrEMBL
  Q5M9J4 ENTREZGENE
  Q5M9P3 ENTREZGENE, UniProtKB/TrEMBL
  Q9CZX8 ENTREZGENE, UniProtKB/Swiss-Prot
  S4R223_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q5M9J4 UniProtKB/Swiss-Prot