Nmu (neuromedin U) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Nmu (neuromedin U) Mus musculus
Analyze
Symbol: Nmu
Name: neuromedin U
RGD ID: 68565
MGI Page MGI
Description: Predicted to enable type 1 neuromedin U receptor binding activity and type 2 neuromedin U receptor binding activity. Involved in several processes, including energy homeostasis; regulation of feeding behavior; and regulation of grooming behavior. Predicted to be located in extracellular region. Predicted to be active in terminal bouton. Is expressed in spinal cord; stomach; and testis. Human ortholog(s) of this gene implicated in obesity. Orthologous to human NMU (neuromedin U).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: neuromedin U precursor-related peptide/neuromedin U preproprotein; neuromedin-U
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39576,481,342 - 76,511,624 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl576,481,342 - 76,511,635 (-)EnsemblGRCm39 Ensembl
GRCm38576,333,495 - 76,363,777 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl576,333,495 - 76,363,788 (-)EnsemblGRCm38mm10GRCm38
MGSCv37576,762,520 - 76,792,802 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36577,408,270 - 77,438,552 (-)NCBIMGSCv36mm8
Celera573,598,831 - 73,629,109 (-)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map540.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[k]fluoranthene  (EXP)
bisphenol A  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
chlordecone  (EXP)
cisplatin  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
D-glucose  (EXP)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
dimethylarsinic acid  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
fenvalerate  (ISO)
folic acid  (EXP,ISO)
furan  (ISO)
genistein  (ISO)
glucose  (EXP)
irinotecan  (ISO)
mechlorethamine  (EXP)
MeIQx  (ISO)
methamphetamine  (ISO)
methimazole  (ISO)
methylarsonic acid  (EXP)
nickel sulfate  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
perfluorononanoic acid  (ISO)
pirinixic acid  (EXP)
poly(I:C)  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
sarin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenate  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium dodecyl sulfate  (ISO)
sulfadimethoxine  (ISO)
temozolomide  (ISO)
testosterone  (EXP,ISO)
thiram  (ISO)
trichostatin A  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Association between neuromedin U gene variants and overweight and obesity. Hainerova I, etal., J Clin Endocrinol Metab. 2006 Dec;91(12):5057-63. Epub 2006 Sep 19.
2. Neuromedin U has a novel anorexigenic effect independent of the leptin signaling pathway. Hanada R, etal., Nat Med. 2004 Oct;10(10):1067-73. Epub 2004 Sep 26.
3. Identification of receptors for neuromedin U and its role in feeding. Howard AD, etal., Nature 2000 Jul 6;406(6791):70-4.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Sensitivity of the hypothalamic paraventricular nucleus to the locomotor-activating effects of neuromedin U in obesity. Novak CM, etal., Brain Res. 2007 Jul 13;.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11116088   PMID:11217851   PMID:12477932   PMID:14610273   PMID:14622096   PMID:15351702   PMID:15369794   PMID:15635449   PMID:15817836  
PMID:16009716   PMID:16141072   PMID:16141073   PMID:16373672   PMID:16466693   PMID:16474416   PMID:16602821   PMID:16716306   PMID:17873881   PMID:18761104   PMID:19070594   PMID:19531638  
PMID:19549882   PMID:21356261   PMID:21586559   PMID:21873635   PMID:22314006   PMID:23892031   PMID:24194600   PMID:25543145   PMID:25741729   PMID:25895852   PMID:26346620   PMID:26826380  
PMID:27463114   PMID:27650608   PMID:28864416   PMID:28869965   PMID:28869974   PMID:28874765   PMID:28902842   PMID:29017855   PMID:31069918   PMID:31677791   PMID:32057362   PMID:33288908  
PMID:35908898   PMID:36227802   PMID:37311538   PMID:37708282   PMID:38071753   PMID:38355793  


Genomics

Comparative Map Data
Nmu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39576,481,342 - 76,511,624 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl576,481,342 - 76,511,635 (-)EnsemblGRCm39 Ensembl
GRCm38576,333,495 - 76,363,777 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl576,333,495 - 76,363,788 (-)EnsemblGRCm38mm10GRCm38
MGSCv37576,762,520 - 76,792,802 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36577,408,270 - 77,438,552 (-)NCBIMGSCv36mm8
Celera573,598,831 - 73,629,109 (-)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map540.93NCBI
NMU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38455,595,231 - 55,636,793 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl455,595,229 - 55,636,698 (-)EnsemblGRCh38hg38GRCh38
GRCh37456,461,398 - 56,502,960 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36456,156,155 - 56,197,222 (-)NCBINCBI36Build 36hg18NCBI36
Build 34456,302,325 - 56,343,393NCBI
Celera453,963,435 - 54,004,491 (-)NCBICelera
Cytogenetic Map4q12NCBI
HuRef452,410,707 - 52,451,808 (-)NCBIHuRef
CHM1_1456,496,442 - 56,537,601 (-)NCBICHM1_1
T2T-CHM13v2.0459,083,363 - 59,124,965 (-)NCBIT2T-CHM13v2.0
Nmu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81432,198,789 - 32,226,397 (+)NCBIGRCr8
mRatBN7.21431,844,564 - 31,872,196 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1431,844,728 - 31,872,192 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1432,211,304 - 32,238,600 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01433,519,191 - 33,546,489 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01432,004,310 - 32,031,606 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01434,353,683 - 34,381,968 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1434,354,503 - 34,381,828 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01434,140,106 - 34,167,815 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41434,115,472 - 34,143,662 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11434,115,471 - 34,143,789 (+)NCBI
Celera1431,146,133 - 31,173,459 (+)NCBICelera
Cytogenetic Map14p11NCBI
Nmu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544715,328,973 - 15,357,830 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544715,324,702 - 15,361,726 (+)NCBIChiLan1.0ChiLan1.0
NMU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2374,159,402 - 74,197,197 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1474,361,439 - 74,399,202 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0468,299,538 - 68,340,680 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1474,866,939 - 74,904,965 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl474,867,364 - 74,904,965 (+)Ensemblpanpan1.1panPan2
LOC611347
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11347,865,037 - 48,047,697 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1347,865,002 - 47,893,921 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1347,921,143 - 47,933,366 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01348,643,518 - 48,662,228 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11348,318,020 - 48,336,672 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01347,846,906 - 47,863,786 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01348,791,482 - 48,810,183 (-)NCBIUU_Cfam_GSD_1.0
Nmu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528528,335,709 - 28,363,577 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648217,936,467 - 17,961,711 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
NMU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl854,952,339 - 54,978,551 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1854,952,333 - 54,978,577 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2858,574,370 - 58,601,523 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NMU
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1712,931,176 - 12,967,294 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl712,932,226 - 12,962,741 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606613,688,566 - 13,723,899 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nmu
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476113,824,144 - 13,848,219 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476113,823,752 - 13,850,756 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nmu
1727 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:45
Interacting mature miRNAs:51
Transcripts:ENSMUST00000031146
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
10043993Hbnr10_mHeligmosomoides bakeri nematode resistance 10 (mouse)Not determined572418876106419011Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576445064110445225Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576445064110445225Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
12904740M1fscn2_mmodifier 1 of Fscn2 (mouse)566529661100529661Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
12904739M2fscn2_mmodifier 2 of FSCN2 (mouse)566529661100529661Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576280786110280917Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576280786110280917Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576445064110445225Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
10412069Desp3_mdespair 3 (mouse)Not determined57293268477246203Mouse
4141124Dshv2_mdorsal hippocampal volume 2 (mouse)Not determined57531534898019803Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576280786110280917Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000031146   ⟹   ENSMUSP00000031146
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,481,342 - 76,511,635 (-)Ensembl
GRCm38.p6 Ensembl576,333,495 - 76,363,788 (-)Ensembl
RefSeq Acc Id: NM_019515   ⟹   NP_062388
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,481,342 - 76,511,624 (-)NCBI
GRCm38576,333,495 - 76,363,777 (-)ENTREZGENE
MGSCv37576,762,520 - 76,792,802 (-)RGD
Celera573,598,831 - 73,629,109 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_062388   ⟸   NM_019515
- Peptide Label: precursor
- UniProtKB: Q9QXK8 (UniProtKB/Swiss-Prot),   Q059S5 (UniProtKB/TrEMBL),   B7ZNB0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000031146   ⟸   ENSMUST00000031146
Protein Domains
Neuromedin U C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QXK8-F1-model_v2 AlphaFold Q9QXK8 1-174 view protein structure

Promoters
RGD ID:6886944
Promoter ID:EPDNEW_M6923
Type:multiple initiation site
Name:Nmu_1
Description:Mus musculus neuromedin U , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38576,363,789 - 76,363,849EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860476 AgrOrtholog
Ensembl Genes ENSMUSG00000029236 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000031146 ENTREZGENE
  ENSMUST00000031146.3 UniProtKB/Swiss-Prot
InterPro Neuromedin-U_amidation-site UniProtKB/Swiss-Prot
  NMU UniProtKB/Swiss-Prot
  NMU_C UniProtKB/Swiss-Prot
KEGG Report mmu:56183 UniProtKB/Swiss-Prot
MGD MGI:1860476 ENTREZGENE
NCBI Gene 56183 ENTREZGENE
PANTHER NEUROMEDIN-U UniProtKB/Swiss-Prot
  PTHR15390 UniProtKB/Swiss-Prot
Pfam NMU UniProtKB/Swiss-Prot
PhenoGen Nmu PhenoGen
PROSITE NMU UniProtKB/Swiss-Prot
SMART NMU UniProtKB/Swiss-Prot
UniProt B7ZNB0 ENTREZGENE, UniProtKB/TrEMBL
  NMU_MOUSE UniProtKB/Swiss-Prot
  Q059S5 ENTREZGENE, UniProtKB/TrEMBL
  Q9JLQ5_MOUSE UniProtKB/TrEMBL
  Q9QXK8 ENTREZGENE