Ctbp2 (C-terminal binding protein 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ctbp2 (C-terminal binding protein 2) Mus musculus
Analyze
Symbol: Ctbp2
Name: C-terminal binding protein 2
RGD ID: 68536
MGI Page MGI
Description: Enables several functions, including nuclear retinoic acid receptor binding activity; transcription coregulator activity; and transcription coregulator binding activity. A structural constituent of presynaptic active zone. Involved in negative regulation of DNA-templated transcription; synaptic vesicle docking; and white fat cell differentiation. Acts upstream of or within cellular response to leukemia inhibitory factor; positive regulation of retinoic acid receptor signaling pathway; and positive regulation of transcription by RNA polymerase II. Located in nucleus and ribbon synapse. Part of transcription repressor complex. Is active in several cellular components, including photoreceptor ribbon synapse; presynaptic active zone cytoplasmic component; and presynaptic cytosol. Is expressed in several structures, including extraembryonic component; ganglia; sensory organ; telencephalon; and tooth. Orthologous to human CTBP2 (C-terminal binding protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA407280; C-terminal-binding protein 2; D7Ertd45; D7Ertd45e; gene trap ROSA b-geo 6; Gtrge; Gtrgeo6; Ribe; Ribeye
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18403  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397132,588,727 - 132,726,048 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7132,589,292 - 132,726,083 (-)EnsemblGRCm39 Ensembl
GRCm387132,986,998 - 133,124,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7132,987,563 - 133,124,354 (-)EnsemblGRCm38mm10GRCm38
MGSCv377140,178,694 - 140,315,166 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367132,825,913 - 132,961,691 (-)NCBIMGSCv36mm8
Celera7132,792,998 - 132,952,787 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map776.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-hydroxyphenyl retinamide  (EXP)
4-methylthio-2-oxobutanoic acid  (EXP,ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (EXP)
alpha-Zearalanol  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
asbestos  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
bucladesine  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
citalopram  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diclofenac  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
escitalopram  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glyphosate  (EXP,ISO)
indometacin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
menadione  (ISO)
methamphetamine  (EXP)
methapyrilene  (ISO)
methimazole  (ISO)
Muraglitazar  (ISO)
nickel atom  (ISO)
Nor-9-carboxy-delta9-THC  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
pyruvic acid  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
Tesaglitazar  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Overlapping and unique roles for C-terminal binding protein 1 (CtBP1) and CtBP2 during mouse development. Hildebrand JD and Soriano P, Mol Cell Biol 2002 Aug;22(15):5296-307.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. RIBEYE, a component of synaptic ribbons: a protein's journey through evolution provides insight into synaptic ribbon function. Schmitz F, etal., Neuron 2000 Dec;28(3):857-72.
10. Molecular cloning and functional characterization of brefeldin A-ADP-ribosylated substrate. A novel protein involved in the maintenance of the Golgi structure. Spano S, etal., J Biol Chem 1999 Jun 18;274(25):17705-10.
11. Large-scale identification of mammalian proteins localized to nuclear sub-compartments. Sutherland HG, etal., Hum Mol Genet 2001 Sep 1;10(18):1995-2011.
Additional References at PubMed
PMID:9187083   PMID:9479502   PMID:9511737   PMID:9724649   PMID:10349636   PMID:10438528   PMID:10512203   PMID:10567582   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851  
PMID:11328817   PMID:11940669   PMID:12444977   PMID:12477932   PMID:12520002   PMID:12714599   PMID:14610273   PMID:14736873   PMID:15037661   PMID:15728193   PMID:15782199   PMID:15840001  
PMID:16141072   PMID:16141073   PMID:16516881   PMID:16702210   PMID:16724116   PMID:16762039   PMID:16782877   PMID:16787403   PMID:16940172   PMID:16940173   PMID:17023432   PMID:17296600  
PMID:17546044   PMID:17635584   PMID:18391014   PMID:18483224   PMID:18641643   PMID:19181930   PMID:19515997   PMID:19564408   PMID:19654328   PMID:19825414   PMID:19932743   PMID:19945391  
PMID:20059953   PMID:20362541   PMID:20362542   PMID:20368623   PMID:20439489   PMID:20705609   PMID:21248103   PMID:21267068   PMID:21516122   PMID:21618221   PMID:21677750   PMID:21873635  
PMID:22083510   PMID:22243746   PMID:22383091   PMID:22442722   PMID:22627278   PMID:22745816   PMID:23217150   PMID:23341629   PMID:23385583   PMID:23604909   PMID:23719817   PMID:23775127  
PMID:23785143   PMID:24146773   PMID:24327562   PMID:24460873   PMID:24594919   PMID:24719103   PMID:24952961   PMID:25659434   PMID:25757744   PMID:25944056   PMID:26178595   PMID:26206133  
PMID:26302206   PMID:26929012   PMID:26979619   PMID:27040640   PMID:27162350   PMID:27539716   PMID:28378742   PMID:28414304   PMID:28438897   PMID:28551284   PMID:28671696   PMID:28760865  
PMID:29026198   PMID:29059194   PMID:29328020   PMID:29328021   PMID:29361558   PMID:29536590   PMID:29922981   PMID:30093671   PMID:30186101   PMID:30209132   PMID:30266776   PMID:30275816  
PMID:30305733   PMID:30333726   PMID:30833597   PMID:31085606   PMID:31092821   PMID:31116980   PMID:31240265   PMID:31321879   PMID:31448880   PMID:31968244   PMID:32071204   PMID:32098917  
PMID:32169478   PMID:32221352   PMID:32249787   PMID:32325033   PMID:32437548   PMID:32675174   PMID:33015071   PMID:34321999   PMID:34360830   PMID:34617508   PMID:34709266   PMID:34728642  
PMID:34732824   PMID:35153673   PMID:35394837   PMID:35508658   PMID:35727972   PMID:35742873   PMID:36074819   PMID:36114006   PMID:36284453   PMID:36293380   PMID:36800995   PMID:37171961  
PMID:37279265   PMID:37557182   PMID:37696386   PMID:38355793   PMID:39883789  


Genomics

Comparative Map Data
Ctbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397132,588,727 - 132,726,048 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7132,589,292 - 132,726,083 (-)EnsemblGRCm39 Ensembl
GRCm387132,986,998 - 133,124,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7132,987,563 - 133,124,354 (-)EnsemblGRCm38mm10GRCm38
MGSCv377140,178,694 - 140,315,166 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367132,825,913 - 132,961,691 (-)NCBIMGSCv36mm8
Celera7132,792,998 - 132,952,787 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map776.32NCBI
CTBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810124,984,317 - 125,162,463 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10124,984,317 - 125,161,170 (-)EnsemblGRCh38hg38GRCh38
GRCh3710126,672,886 - 126,849,599 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610126,666,408 - 126,839,614 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410126,667,390 - 126,706,443NCBI
Celera10120,450,227 - 120,623,304 (-)NCBICelera
Cytogenetic Map10q26.13NCBI
HuRef10120,363,415 - 120,486,611 (-)NCBIHuRef
CHM1_110126,958,181 - 127,131,354 (-)NCBICHM1_1
T2T-CHM13v2.010125,865,353 - 126,042,062 (-)NCBIT2T-CHM13v2.0
Ctbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,208,536 - 197,348,802 (-)NCBIGRCr8
mRatBN7.21187,782,064 - 187,918,115 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1187,782,682 - 187,920,222 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1196,132,185 - 196,161,990 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01203,309,199 - 203,338,992 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01195,982,314 - 196,012,104 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01205,001,354 - 205,030,565 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1205,001,396 - 205,040,755 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,993,864 - 212,023,075 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41192,463,615 - 192,492,935 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11192,613,495 - 192,642,816 (-)NCBI
Celera1185,527,008 - 185,555,539 (-)NCBICelera
Cytogenetic Map1q41NCBI
Ctbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554772,922,334 - 3,082,406 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554772,922,334 - 3,082,088 (-)NCBIChiLan1.0ChiLan1.0
CTBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28136,838,857 - 137,011,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110136,844,222 - 137,016,902 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010121,550,194 - 121,722,828 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110125,814,926 - 125,985,395 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10125,814,926 - 125,901,248 (-)Ensemblpanpan1.1panPan2
CTBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12834,259,912 - 34,415,113 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2834,260,856 - 34,415,696 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2834,321,769 - 34,478,865 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02834,817,289 - 34,974,135 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2834,817,450 - 34,972,963 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12834,374,411 - 34,531,531 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02834,365,420 - 34,522,841 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02834,617,559 - 34,774,970 (-)NCBIUU_Cfam_GSD_1.0
Ctbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721312,300,041 - 12,388,004 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648613,173,301 - 13,261,259 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648613,173,280 - 13,261,257 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14134,329,941 - 134,487,755 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114134,329,312 - 134,488,805 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214145,880,742 - 145,990,152 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19117,635,124 - 117,806,908 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9117,639,317 - 117,804,850 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604878,992,159 - 79,163,189 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473722,003,871 - 22,165,257 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473722,135,046 - 22,166,580 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ctbp2
7043 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:4436
Count of miRNA genes:834
Interacting mature miRNAs:1103
Transcripts:ENSMUST00000033269, ENSMUST00000155996, ENSMUST00000163601, ENSMUST00000164739, ENSMUST00000164896, ENSMUST00000165457, ENSMUST00000165534, ENSMUST00000166400, ENSMUST00000166439, ENSMUST00000167218, ENSMUST00000168238, ENSMUST00000168762, ENSMUST00000168958, ENSMUST00000169570, ENSMUST00000170459, ENSMUST00000171022, ENSMUST00000171727, ENSMUST00000171882, ENSMUST00000171968, ENSMUST00000172341
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301590Pbwg3_mpostnatal body weight growth 3 (mouse)Not determined7127311241144995196Mouse
1300566Sluc8_msusceptibility to lung cancer 8 (mouse)Not determined7127398151144995196Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
14746988Manh63_mmandible shape 63 (mouse)7127735437144995196Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse

Markers in Region
T25625  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387133,092,478 - 133,092,638UniSTSGRCm38
MGSCv377140,284,161 - 140,284,321UniSTSGRCm37
Celera7132,898,511 - 132,898,671UniSTS
Cytogenetic Map7F3UniSTS
cM Map766.0UniSTS
Whitehead_YAC7 UniSTS
RH124584  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387132,987,638 - 132,987,726UniSTSGRCm38
GRCm38483,422,130 - 83,422,218UniSTSGRCm38
MGSCv377140,179,321 - 140,179,409UniSTSGRCm37
MGSCv37483,068,034 - 83,068,122UniSTSGRCm37
Celera481,963,013 - 81,963,101UniSTS
Celera7132,793,624 - 132,793,712UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map4C3UniSTS
cM Map766.0UniSTS
UniSTS:235793  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387133,095,086 - 133,095,395UniSTSGRCm38
MGSCv377140,286,769 - 140,287,078UniSTSGRCm37
Celera7132,901,119 - 132,901,428UniSTS
Cytogenetic Map7F3UniSTS
cM Map766.0UniSTS
BF401944  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387133,044,821 - 133,045,007UniSTSGRCm38
MGSCv377140,236,504 - 140,236,690UniSTSGRCm37
Celera7132,850,869 - 132,851,055UniSTS
Cytogenetic Map7F3UniSTS
cM Map766.0UniSTS
D7Ertd45e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387132,989,399 - 132,989,633UniSTSGRCm38
MGSCv377140,181,082 - 140,181,316UniSTSGRCm37
Celera7132,795,385 - 132,795,619UniSTS
Cytogenetic Map7F3UniSTS
cM Map766.0UniSTS
D7Dcr55  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F3UniSTS
cM Map776.32UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB033123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC119806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC138624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF016508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF059735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI730932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ905756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ905757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ905758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ905759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ905760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ905762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM026966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM026967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM026968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM026969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000033269   ⟹   ENSMUSP00000033269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,589,350 - 132,725,096 (-)Ensembl
GRCm38.p6 Ensembl7132,987,621 - 133,123,367 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155996   ⟹   ENSMUSP00000132558
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,627,449 - 132,713,520 (-)Ensembl
GRCm38.p6 Ensembl7133,025,720 - 133,111,791 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163601   ⟹   ENSMUSP00000128944
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,616,386 - 132,725,075 (-)Ensembl
GRCm38.p6 Ensembl7133,014,657 - 133,123,346 (-)Ensembl
Ensembl Acc Id: ENSMUST00000164739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,616,565 - 132,631,845 (-)Ensembl
GRCm38.p6 Ensembl7133,014,836 - 133,030,116 (-)Ensembl
Ensembl Acc Id: ENSMUST00000164896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,616,583 - 132,725,499 (-)Ensembl
GRCm38.p6 Ensembl7133,014,854 - 133,123,770 (-)Ensembl
Ensembl Acc Id: ENSMUST00000165457   ⟹   ENSMUSP00000126126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,589,292 - 132,617,219 (-)Ensembl
GRCm38.p6 Ensembl7132,987,563 - 133,015,490 (-)Ensembl
Ensembl Acc Id: ENSMUST00000165534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,616,196 - 132,725,077 (-)Ensembl
GRCm38.p6 Ensembl7133,014,467 - 133,123,348 (-)Ensembl
Ensembl Acc Id: ENSMUST00000166400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,616,196 - 132,725,201 (-)Ensembl
GRCm38.p6 Ensembl7133,014,467 - 133,123,472 (-)Ensembl
Ensembl Acc Id: ENSMUST00000166439   ⟹   ENSMUSP00000127448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,589,313 - 132,724,895 (-)Ensembl
GRCm38.p6 Ensembl7132,987,584 - 133,123,166 (-)Ensembl
Ensembl Acc Id: ENSMUST00000167218   ⟹   ENSMUSP00000133269
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,616,851 - 132,724,344 (-)Ensembl
GRCm38.p6 Ensembl7133,015,122 - 133,122,615 (-)Ensembl
Ensembl Acc Id: ENSMUST00000168238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,683,246 - 132,724,913 (-)Ensembl
GRCm38.p6 Ensembl7133,081,517 - 133,123,184 (-)Ensembl
Ensembl Acc Id: ENSMUST00000168762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,645,447 - 132,725,585 (-)Ensembl
GRCm38.p6 Ensembl7133,043,718 - 133,123,856 (-)Ensembl
Ensembl Acc Id: ENSMUST00000168958   ⟹   ENSMUSP00000132892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,593,456 - 132,625,486 (-)Ensembl
GRCm38.p6 Ensembl7132,991,727 - 133,023,757 (-)Ensembl
Ensembl Acc Id: ENSMUST00000169570   ⟹   ENSMUSP00000130294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,589,307 - 132,616,977 (-)Ensembl
GRCm38.p6 Ensembl7132,987,578 - 133,015,248 (-)Ensembl
Ensembl Acc Id: ENSMUST00000170459   ⟹   ENSMUSP00000129590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,616,893 - 132,725,154 (-)Ensembl
GRCm38.p6 Ensembl7133,015,164 - 133,123,425 (-)Ensembl
Ensembl Acc Id: ENSMUST00000171022   ⟹   ENSMUSP00000132399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,627,450 - 132,725,041 (-)Ensembl
GRCm38.p6 Ensembl7133,025,721 - 133,123,312 (-)Ensembl
Ensembl Acc Id: ENSMUST00000171727
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,616,460 - 132,714,428 (-)Ensembl
GRCm38.p6 Ensembl7133,014,731 - 133,112,699 (-)Ensembl
Ensembl Acc Id: ENSMUST00000171882   ⟹   ENSMUSP00000129312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,627,431 - 132,726,083 (-)Ensembl
GRCm38.p6 Ensembl7133,025,702 - 133,124,354 (-)Ensembl
Ensembl Acc Id: ENSMUST00000171968   ⟹   ENSMUSP00000130727
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,627,493 - 132,725,585 (-)Ensembl
GRCm38.p6 Ensembl7133,025,764 - 133,123,856 (-)Ensembl
Ensembl Acc Id: ENSMUST00000172341   ⟹   ENSMUSP00000127701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7132,596,923 - 132,723,929 (-)Ensembl
GRCm38.p6 Ensembl7132,995,194 - 133,122,200 (-)Ensembl
RefSeq Acc Id: NM_001170744   ⟹   NP_001164215
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,617,204 (-)NCBI
GRCm387132,987,011 - 133,015,247 (-)NCBI
MGSCv377140,178,694 - 140,315,166 (-)RGD
Celera7132,792,998 - 132,929,095 (-)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001347623   ⟹   NP_001334552
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,725,596 (-)NCBI
GRCm387132,987,011 - 133,081,860 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001412294   ⟹   NP_001399223
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,617,204 (-)NCBI
RefSeq Acc Id: NM_001412295   ⟹   NP_001399224
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,724,479 (-)NCBI
RefSeq Acc Id: NM_001412296   ⟹   NP_001399225
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,714,442 (-)NCBI
RefSeq Acc Id: NM_001412297   ⟹   NP_001399226
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,725,596 (-)NCBI
RefSeq Acc Id: NM_001412298   ⟹   NP_001399227
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,724,479 (-)NCBI
RefSeq Acc Id: NM_001412299   ⟹   NP_001399228
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,725,096 (-)NCBI
RefSeq Acc Id: NM_001412300   ⟹   NP_001399229
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,725,096 (-)NCBI
RefSeq Acc Id: NM_001412301   ⟹   NP_001399230
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,726,048 (-)NCBI
RefSeq Acc Id: NM_001412302   ⟹   NP_001399231
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,724,479 (-)NCBI
RefSeq Acc Id: NM_001412303   ⟹   NP_001399232
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,724,479 (-)NCBI
RefSeq Acc Id: NM_001412304   ⟹   NP_001399233
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,725,096 (-)NCBI
RefSeq Acc Id: NM_001412305   ⟹   NP_001399234
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,724,479 (-)NCBI
RefSeq Acc Id: NM_001412306   ⟹   NP_001399235
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,725,096 (-)NCBI
RefSeq Acc Id: NM_001412307   ⟹   NP_001399236
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,725,096 (-)NCBI
RefSeq Acc Id: NM_001412308   ⟹   NP_001399237
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,724,479 (-)NCBI
RefSeq Acc Id: NM_001412309   ⟹   NP_001399238
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,714,442 (-)NCBI
RefSeq Acc Id: NM_009980   ⟹   NP_034110
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,734 - 132,725,096 (-)NCBI
GRCm387132,987,011 - 133,123,483 (-)NCBI
MGSCv377140,178,694 - 140,315,166 (-)RGD
Celera7132,792,998 - 132,929,095 (-)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036152630   ⟹   XP_036008523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397132,588,727 - 132,698,575 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001164215 (Get FASTA)   NCBI Sequence Viewer  
  NP_001334552 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399223 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399224 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399225 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399226 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399227 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399228 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399229 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399230 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399231 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399232 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399233 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399234 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399235 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399236 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399237 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399238 (Get FASTA)   NCBI Sequence Viewer  
  NP_034110 (Get FASTA)   NCBI Sequence Viewer  
  XP_036008523 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC33873 (Get FASTA)   NCBI Sequence Viewer  
  AAC40043 (Get FASTA)   NCBI Sequence Viewer  
  AAH13333 (Get FASTA)   NCBI Sequence Viewer  
  AAH17520 (Get FASTA)   NCBI Sequence Viewer  
  ADN33262 (Get FASTA)   NCBI Sequence Viewer  
  ADN33263 (Get FASTA)   NCBI Sequence Viewer  
  ADN33264 (Get FASTA)   NCBI Sequence Viewer  
  ADN33265 (Get FASTA)   NCBI Sequence Viewer  
  ADN94718 (Get FASTA)   NCBI Sequence Viewer  
  ADN94719 (Get FASTA)   NCBI Sequence Viewer  
  ADN94720 (Get FASTA)   NCBI Sequence Viewer  
  ADN94721 (Get FASTA)   NCBI Sequence Viewer  
  ADN94722 (Get FASTA)   NCBI Sequence Viewer  
  ADN94724 (Get FASTA)   NCBI Sequence Viewer  
  BAA85181 (Get FASTA)   NCBI Sequence Viewer  
  BAE22127 (Get FASTA)   NCBI Sequence Viewer  
  BAE27378 (Get FASTA)   NCBI Sequence Viewer  
  BAE28193 (Get FASTA)   NCBI Sequence Viewer  
  BAE38614 (Get FASTA)   NCBI Sequence Viewer  
  EDL17759 (Get FASTA)   NCBI Sequence Viewer  
  EDL17760 (Get FASTA)   NCBI Sequence Viewer  
  EDL17761 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000033269
  ENSMUSP00000033269.9
  ENSMUSP00000127448
  ENSMUSP00000130294
  ENSMUSP00000130294.2
GenBank Protein P56546 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034110   ⟸   NM_009980
- Peptide Label: isoform 2
- UniProtKB: O54855 (UniProtKB/Swiss-Prot),   O88462 (UniProtKB/Swiss-Prot),   P56546 (UniProtKB/Swiss-Prot),   Q3UGL5 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001164215   ⟸   NM_001170744
- Peptide Label: isoform 1
- UniProtKB: P56546 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001334552   ⟸   NM_001347623
- Peptide Label: isoform 3
- UniProtKB: Q91YZ2 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000129590   ⟸   ENSMUST00000170459
Ensembl Acc Id: ENSMUSP00000128944   ⟸   ENSMUST00000163601
Ensembl Acc Id: ENSMUSP00000127701   ⟸   ENSMUST00000172341
Ensembl Acc Id: ENSMUSP00000127448   ⟸   ENSMUST00000166439
Ensembl Acc Id: ENSMUSP00000130727   ⟸   ENSMUST00000171968
Ensembl Acc Id: ENSMUSP00000129312   ⟸   ENSMUST00000171882
Ensembl Acc Id: ENSMUSP00000132399   ⟸   ENSMUST00000171022
Ensembl Acc Id: ENSMUSP00000033269   ⟸   ENSMUST00000033269
Ensembl Acc Id: ENSMUSP00000126126   ⟸   ENSMUST00000165457
Ensembl Acc Id: ENSMUSP00000130294   ⟸   ENSMUST00000169570
Ensembl Acc Id: ENSMUSP00000132892   ⟸   ENSMUST00000168958
Ensembl Acc Id: ENSMUSP00000133269   ⟸   ENSMUST00000167218
Ensembl Acc Id: ENSMUSP00000132558   ⟸   ENSMUST00000155996
RefSeq Acc Id: XP_036008523   ⟸   XM_036152630
- Peptide Label: isoform X2
- UniProtKB: Q91YZ2 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399230   ⟸   NM_001412301
- Peptide Label: isoform 2
- UniProtKB: P56546 (UniProtKB/Swiss-Prot),   O54855 (UniProtKB/Swiss-Prot),   O88462 (UniProtKB/Swiss-Prot),   Q3UGL5 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399226   ⟸   NM_001412297
- Peptide Label: isoform 2
- UniProtKB: P56546 (UniProtKB/Swiss-Prot),   O54855 (UniProtKB/Swiss-Prot),   O88462 (UniProtKB/Swiss-Prot),   Q3UGL5 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399236   ⟸   NM_001412307
- Peptide Label: isoform 3
- UniProtKB: Q91YZ2 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399235   ⟸   NM_001412306
- Peptide Label: isoform 3
- UniProtKB: Q91YZ2 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399228   ⟸   NM_001412299
- Peptide Label: isoform 2
- UniProtKB: P56546 (UniProtKB/Swiss-Prot),   O54855 (UniProtKB/Swiss-Prot),   O88462 (UniProtKB/Swiss-Prot),   Q3UGL5 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399233   ⟸   NM_001412304
- Peptide Label: isoform 3
- UniProtKB: Q91YZ2 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399229   ⟸   NM_001412300
- Peptide Label: isoform 2
- UniProtKB: P56546 (UniProtKB/Swiss-Prot),   O54855 (UniProtKB/Swiss-Prot),   O88462 (UniProtKB/Swiss-Prot),   Q3UGL5 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399232   ⟸   NM_001412303
- Peptide Label: isoform 3
- UniProtKB: Q91YZ2 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399227   ⟸   NM_001412298
- Peptide Label: isoform 2
- UniProtKB: P56546 (UniProtKB/Swiss-Prot),   O54855 (UniProtKB/Swiss-Prot),   O88462 (UniProtKB/Swiss-Prot),   Q3UGL5 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399237   ⟸   NM_001412308
- Peptide Label: isoform 3
- UniProtKB: Q91YZ2 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399231   ⟸   NM_001412302
- Peptide Label: isoform 2
- UniProtKB: P56546 (UniProtKB/Swiss-Prot),   O54855 (UniProtKB/Swiss-Prot),   O88462 (UniProtKB/Swiss-Prot),   Q3UGL5 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399234   ⟸   NM_001412305
- Peptide Label: isoform 3
- UniProtKB: Q91YZ2 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399224   ⟸   NM_001412295
- Peptide Label: isoform 2
- UniProtKB: P56546 (UniProtKB/Swiss-Prot),   O54855 (UniProtKB/Swiss-Prot),   O88462 (UniProtKB/Swiss-Prot),   Q3UGL5 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399238   ⟸   NM_001412309
- Peptide Label: isoform 3
- UniProtKB: Q91YZ2 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399225   ⟸   NM_001412296
- Peptide Label: isoform 2
- UniProtKB: P56546 (UniProtKB/Swiss-Prot),   O54855 (UniProtKB/Swiss-Prot),   O88462 (UniProtKB/Swiss-Prot),   Q3UGL5 (UniProtKB/TrEMBL),   Q3UIX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399223   ⟸   NM_001412294
- Peptide Label: isoform 4
- UniProtKB: Q3UIX8 (UniProtKB/TrEMBL)
Protein Domains
D-isomer specific 2-hydroxyacid dehydrogenase   D-isomer specific 2-hydroxyacid dehydrogenase NAD-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P56546-F1-model_v2 AlphaFold P56546 1-445 view protein structure

Promoters
RGD ID:8665871
Promoter ID:EPDNEW_M10967
Type:initiation region
Name:Ctbp2_1
Description:Mus musculus C-terminal binding protein 2 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387133,123,367 - 133,123,427EPDNEW
RGD ID:6840884
Promoter ID:MM_KWN:53010
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Lung
Transcripts:NM_001170744,   UC009KCX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367140,205,556 - 140,206,447 (-)MPROMDB
RGD ID:6848112
Promoter ID:MM_ACW:46330
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Lung
Transcripts:CTBP2.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367140,306,756 - 140,307,822 (-)MPROMDB
RGD ID:6840885
Promoter ID:MM_KWN:53013
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_009980,   UC009KCZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367140,314,671 - 140,316,072 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1201686 AgrOrtholog
Ensembl Genes ENSMUSG00000030970 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000033269 ENTREZGENE
  ENSMUST00000033269.15 UniProtKB/Swiss-Prot
  ENSMUST00000166439 ENTREZGENE
  ENSMUST00000169570 ENTREZGENE
  ENSMUST00000169570.8 UniProtKB/Swiss-Prot
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot
InterPro CtBP UniProtKB/Swiss-Prot
  CTBP_dehydrogenase UniProtKB/Swiss-Prot
  D-isomer_2_OHA_DH_cat_dom UniProtKB/Swiss-Prot
  D-isomer_DH_CS UniProtKB/Swiss-Prot
  D-isomer_DH_NAD-bd UniProtKB/Swiss-Prot
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:13017 UniProtKB/Swiss-Prot
MGD MGI:1201686 ENTREZGENE
NCBI Gene 13017 ENTREZGENE
PANTHER C-TERMINAL-BINDING PROTEIN UniProtKB/Swiss-Prot
  C-TERMINAL-BINDING PROTEIN 2 UniProtKB/Swiss-Prot
Pfam 2-Hacid_dh UniProtKB/Swiss-Prot
  2-Hacid_dh_C UniProtKB/Swiss-Prot
PhenoGen Ctbp2 PhenoGen
PROSITE D_2_HYDROXYACID_DH_3 UniProtKB/Swiss-Prot
Superfamily-SCOP Formate/glycerate dehydrogenase catalytic domain-like UniProtKB/Swiss-Prot
  SSF51735 UniProtKB/Swiss-Prot
UniProt CTBP2_MOUSE UniProtKB/Swiss-Prot
  E9PWQ9_MOUSE UniProtKB/TrEMBL
  E9PX05_MOUSE UniProtKB/TrEMBL
  E9PZG2_MOUSE UniProtKB/TrEMBL
  E9Q0T4_MOUSE UniProtKB/TrEMBL
  E9Q0V8_MOUSE UniProtKB/TrEMBL
  E9Q123_MOUSE UniProtKB/TrEMBL
  E9Q4S8_MOUSE UniProtKB/TrEMBL
  E9Q815_MOUSE UniProtKB/TrEMBL
  E9QA96_MOUSE UniProtKB/TrEMBL
  O54855 ENTREZGENE
  O88462 ENTREZGENE
  P56546 ENTREZGENE
  Q3TM28_MOUSE UniProtKB/TrEMBL
  Q3UGL5 ENTREZGENE, UniProtKB/TrEMBL
  Q3UIX8 ENTREZGENE, UniProtKB/TrEMBL
  Q91YZ2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary O54855 UniProtKB/Swiss-Prot
  O88462 UniProtKB/Swiss-Prot