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Gene: Vapb (vesicle-associated membrane protein, associated protein B and C) Mus musculus

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Symbol:

Vapb

Name:

vesicle-associated membrane protein, associated protein B and C

RGD ID:

68453

MGI Page

MGI

Description:

Predicted to enable several functions, including FFAT motif binding activity; protein dimerization activity; and tubulin binding activity. Predicted to be involved in several processes, including IRE1-mediated unfolded protein response; endoplasmic reticulum organization; and modulation by host of viral genome replication. Located in membrane. Is expressed in dorsal root ganglion. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis; amyotrophic lateral sclerosis type 8; autosomal dominant adult-onset proximal spinal muscular atrophy; and spinal muscular atrophy. Orthologous to human VAPB (VAMP associated protein B and C).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AI225786; AI840687; AI848259; D2Abb2; D2Abb2e; R75548; VAMP-associated protein 33b; VAMP-associated protein B; VAMP-B; Vamp33b; VAP; VAP-B; VAP33b; vesicle-associated membrane protein-associated protein B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VAPB (VAMP associated protein B and C)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Vapb (VAMP associated protein B and C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Vapb (VAMP associated protein B and C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VAPB (VAMP associated protein B and C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	VAPB (VAMP associated protein B and C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Vapb (VAMP associated protein B and C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	VAPB (VAMP associated protein B and C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VAPB (VAMP associated protein B and C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Vapb (VAMP associated protein B and C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Vapb (VAMP associated protein B and C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	VAPB (VAMP associated protein B and C)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	vapb (VAMP (vesicle-associated membrane protein)-associated protein B and C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	F42G2.5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SCS2	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SCS22	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Vap33	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ZC196.2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	vpr-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	vapb	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	173,579,378 - 173,626,132 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	173,579,304 - 173,626,132 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	173,737,571 - 173,784,336 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	173,737,511 - 173,784,339 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	173,563,072 - 173,609,837 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	173,380,510 - 173,427,275 (+)	NCBI		MGSCv36	mm8
Celera	2	179,705,544 - 179,751,066 (+)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	97.37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis (ISO)

amyotrophic lateral sclerosis type 1 (ISO)

amyotrophic lateral sclerosis type 8 (ISO)

autosomal dominant adult-onset proximal spinal muscular atrophy (ISO)

genetic disease (ISO)

spinal muscular atrophy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dimethoxyphenol (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (EXP)

6-propyl-2-thiouracil (ISO)

7,12-dimethyltetraphene (EXP)

aconitine (ISO)

ammonium chloride (ISO)

antimycin A (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (EXP)

arsenous acid (EXP)

benzo[a]pyrene (EXP)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (EXP)

beta-lapachone (ISO)

bisphenol A (ISO)

bisphenol F (EXP)

Brodifacoum (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (EXP)

celecoxib (EXP)

CGP 52608 (ISO)

chloroprene (EXP)

clozapine (ISO)

cocaine (ISO)

coumarin (ISO)

Cuprizon (ISO)

deguelin (ISO)

diarsenic trioxide (EXP)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (EXP)

ethyl methanesulfonate (ISO)

fenpyroximate (ISO)

finasteride (ISO)

flufenoxuron (EXP)

flutamide (ISO)

folic acid (EXP)

formaldehyde (ISO)

FR900359 (ISO)

furfural (ISO)

geldanamycin (ISO)

hydrogen cyanide (EXP)

ivermectin (ISO)

lanthanum trichloride (ISO)

lead(0) (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

ozone (EXP,ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

pentachlorophenol (EXP)

picoxystrobin (ISO)

potassium cyanide (EXP)

pregnenolone 16alpha-carbonitrile (ISO)

pyrimidifen (ISO)

quercetin (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sulindac (ISO)

tebufenpyrad (ISO)

thapsigargin (EXP)

thimerosal (ISO)

titanium dioxide (EXP)

trichloroethene (ISO)

trichostatin A (ISO)

valproic acid (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cholesterol transport (ISO)

COPII-coated vesicle budding (ISO)

endoplasmic reticulum membrane organization (IBA)

endoplasmic reticulum organization (ISO)

endoplasmic reticulum to Golgi vesicle-mediated transport (ISO)

endoplasmic reticulum unfolded protein response (ISO)

endoplasmic reticulum-plasma membrane tethering (IBA)

intracellular calcium ion homeostasis (ISO,ISS)

IRE1-mediated unfolded protein response (ISO,ISS)

modulation by host of viral RNA genome replication (ISO)

negative regulation by host of viral genome replication (ISO)

negative regulation by virus of viral protein levels in host cell (ISO)

positive regulation by host of viral genome replication (ISO)

positive regulation of viral genome replication (ISO)

suppression of viral release by host (ISO)

viral release from host cell (ISO)

Cellular Component

cytoplasm (ISO)

endoplasmic reticulum (ISO)

endoplasmic reticulum exit site (ISO)

endoplasmic reticulum membrane (IBA,ISO,ISS)

glutamatergic synapse (ISO)

Golgi apparatus (ISO)

membrane (IDA)

plasma membrane (IBA)

postsynapse (ISO)

presynapse (ISO)

Molecular Function

beta-tubulin binding (ISO)

enzyme binding (ISO)

FFAT motif binding (ISO)

microtubule binding (ISO)

protein binding (IPI)

protein heterodimerization activity (ISO)

protein homodimerization activity (ISO)

protein-membrane adaptor activity (IBA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal neuromuscular synapse morphology (IAGP)

abnormal synaptic bouton morphology (IAGP)

axon degeneration (IAGP)

centrally nucleated skeletal muscle fibers (IAGP)

enhanced coordination (IEA)

hypotonia (IAGP)

impaired coordination (IAGP)

improved glucose tolerance (IEA)

increased aggression (IEA)

neuronal cytoplasmic inclusions (IAGP)

skeletal muscle fiber atrophy (IAGP)

tremors (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	A mutation in the vesicle-trafficking protein VAPB causes late-onset spinal muscular atrophy and amyotrophic lateral sclerosis.	Nishimura AL, etal., Am J Hum Genet. 2004 Nov;75(5):822-31. Epub 2004 Sep 15.
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
6.	Somatic cell hybrids for high-density mapping of chromosome 2 breakpoints in radiation-induced myeloid leukemia cell lines from inbred mice.	Pazzaglia S, etal., Mol Carcinog 2000 Mar;27(3):219-28.
7.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8858346	PMID:8889548	PMID:10349636	PMID:10512203	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12477932	PMID:12520002	PMID:14561759	PMID:14610273
PMID:15741177	PMID:15782199	PMID:15840001	PMID:16141072	PMID:16141073	PMID:16602821	PMID:17967808	PMID:18614564	PMID:18799693	PMID:19183264	PMID:20188146	PMID:20477942
PMID:21267068	PMID:21873635	PMID:21933185	PMID:22245675	PMID:22794259	PMID:23446633	PMID:23604909	PMID:24039594	PMID:24251978	PMID:24885147	PMID:25044020	PMID:26266407
PMID:26362257	PMID:28378742	PMID:28706196	PMID:29648643	PMID:29879376	PMID:30012696	PMID:30589881	PMID:32376919	PMID:32525583	PMID:32554809	PMID:33137126	PMID:33601422
PMID:36417873	PMID:37142655	PMID:38355793	PMID:38529784

Genomics

Comparative Map Data

Vapb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	173,579,378 - 173,626,132 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	173,579,304 - 173,626,132 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	173,737,571 - 173,784,336 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	173,737,511 - 173,784,339 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	173,563,072 - 173,609,837 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	173,380,510 - 173,427,275 (+)	NCBI		MGSCv36	mm8
Celera	2	179,705,544 - 179,751,066 (+)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	97.37	NCBI

VAPB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	58,389,229 - 58,451,101 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	58,389,229 - 58,451,101 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	56,964,285 - 57,026,157 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	56,397,651 - 56,455,369 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	56,397,650 - 56,455,367	NCBI
Celera	20	53,704,711 - 53,762,426 (+)	NCBI		Celera
Cytogenetic Map	20	q13.32	NCBI
HuRef	20	53,747,058 - 53,809,032 (+)	NCBI		HuRef
CHM1_1	20	56,865,734 - 56,927,715 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	60,170,197 - 60,232,150 (+)	NCBI		T2T-CHM13v2.0

Vapb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	182,954,247 - 182,997,018 (+)	NCBI		GRCr8
mRatBN7.2	3	162,535,974 - 162,578,747 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	162,535,905 - 162,573,763 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	166,335,144 - 166,371,611 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	174,838,730 - 174,875,679 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	172,575,947 - 172,612,410 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	171,832,558 - 171,871,042 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	171,832,500 - 171,868,647 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	177,890,856 - 177,931,543 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	164,632,388 - 164,669,187 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	164,538,238 - 164,576,441 (+)	NCBI
Celera	3	161,718,437 - 161,754,637 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

Vapb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	1,098,454 - 1,120,823 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	1,098,454 - 1,122,879 (-)	NCBI	ChiLan1.0	ChiLan1.0

VAPB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	64,147,622 - 64,209,801 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	64,140,742 - 64,202,911 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	54,736,035 - 54,798,155 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	56,010,782 - 56,071,185 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	56,010,782 - 56,064,363 (+)	Ensembl	panpan1.1		panPan2

VAPB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	43,182,158 - 43,238,019 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	43,182,196 - 43,231,336 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	42,428,808 - 42,484,615 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	44,048,066 - 44,104,061 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	44,048,014 - 44,098,692 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	43,152,527 - 43,208,360 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	43,270,720 - 43,326,518 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	43,929,924 - 43,985,979 (+)	NCBI		UU_Cfam_GSD_1.0

Vapb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	182,275,951 - 182,320,727 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	985,488 - 1,031,125 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	985,488 - 1,030,270 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VAPB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	58,594,749 - 58,644,914 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	58,594,749 - 58,644,925 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	65,806,107 - 65,856,325 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VAPB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	5,686,294 - 5,740,855 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	5,687,611 - 5,740,740 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	53,733,097 - 53,795,120 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vapb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	24,716,716 - 24,766,480 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	24,716,835 - 24,767,806 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Vapb
2050 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	2745
Count of miRNA genes:	867
Interacting mature miRNAs:	1210
Transcripts:	ENSMUST00000067530, ENSMUST00000154306
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300688	Nidd2k_m	Nidd2 on KK-A (mouse)			Not determined		2	158078337	178442452	Mouse
1301783	Bhr1_m	bronchial hyperresponsiveness 1 (mouse)			Not determined		2	142593476	178442452	Mouse
12790983	Bwq12_m	body weight QTL 12 (mouse)					2	148238204	181755017	Mouse
11038701	Ltpr2e_m	Leishmania tropica response 2e (mouse)					2	150212221	181755017	Mouse
1301019	Bmd6_m	bone mineral density 6 (mouse)			Not determined		2	151778297	181755017	Mouse
4142450	Lmr16_m	leishmaniasis resistance 16 (mouse)			Not determined		2	150212221	181755017	Mouse
1301085	Lrnx10_m	learning-contextual 10 (mouse)			Not determined		2	150212221	181755017	Mouse
11353826	Bdln10_m	body length 10 (mouse)					2	140441482	174441482	Mouse
1300867	Lore2_m	loss of righting induced by ethanol 2 (mouse)			Not determined		2	144515861	180896594	Mouse
1558917	Gct8_m	granulosa cell tumorigenesis 8 (mouse)			Not determined		2	149236907	181755017	Mouse
1300806	Aod4_m	autoimmune ovarian dysgenesis 4 (mouse)			Not determined		2	145228719	179228841	Mouse
1300676	Prdt2_m	prion disease incubation time 2 (mouse)			Not determined		2	164515154	181755017	Mouse
1558991	Tailq4_m	tail length QTL 4 (mouse)			Not determined		2	162736926	178442452	Mouse
14747002	Mancz3_m	mandible centroid size 3 (mouse)					2	152329820	181755017	Mouse
1300751	Bdt1_m	bone density traits 1 (mouse)			Not determined		2	149988902	181755017	Mouse
1300622	Cfld1_m	cystic fibrosis lung disease 1 (mouse)			Not determined		2	155823920	181755017	Mouse
12910811	Pwbwq3_m	pre-weaning body weight QTL 3 (mouse)					2	169794802	178920791	Mouse
1302003	Sluc17_m	susceptibility to lung cancer 17 (mouse)			Not determined		2	162433493	181755017	Mouse
1301618	Bglu1_m	blood glucose level 1 (mouse)			Not determined		2	117942930	174324863	Mouse
12738409	Lfibq1_m	liver fibrosis QTL 1 (mouse)					2	167716420	179207088	Mouse
1302013	Tbbmd3_m	total body bone mineral density 3 (mouse)			Not determined		2	145196949	179197085	Mouse
5491196	Mobq6_m	multigenic obesity QTL 6 (mouse)			Not determined		2	85724269	180896594	Mouse
1357435	Epfq2_m	epididymal fat pad weight QTL 2 (mouse)			Not determined		2	162736926	178442452	Mouse
12801456	Intmrm1_m	intima/media ratio modifier 1 (mouse)					2	142428347	176428450	Mouse
1357537	Lith12_m	lithogenic gene 12 (mouse)			Not determined		2	156196464	181755017	Mouse
12801461	Intim1_m	intima modifier 1 (mouse)					2	142428347	176428450	Mouse
1301348	Alcp5_m	alcohol preference locus 5 (mouse)			Not determined		2	163486407	181755017	Mouse
1301865	Hdlq19_m	HDL QTL 19 (mouse)			Not determined		2	145518775	179518926	Mouse
4142211	Nilac3_m	nicotine induced locomotor activity 3 (mouse)			Not determined		2	148664893	181755017	Mouse
12910520	Scgq3_m	spontaneous crescentic glomerulonephritis QTL 3 (mouse)					2	151709273	174389124	Mouse
1301677	Alcp6_m	alcohol preference locus 6 (mouse)			Not determined		2	163486407	181755017	Mouse

Markers in Region

AW742633

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	173,783,389 - 173,783,636	UniSTS	GRCm38
MGSCv37	2	173,608,890 - 173,609,137	UniSTS	GRCm37
Celera	2	179,750,119 - 179,750,366	UniSTS
Cytogenetic Map	2	H4	UniSTS
cM Map	2	103.0	UniSTS
Whitehead/MRC_RH	2	1941.73	UniSTS

RH135972

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	173,783,479 - 173,783,685	UniSTS	GRCm38
MGSCv37	2	173,608,980 - 173,609,186	UniSTS	GRCm37
Celera	2	179,750,209 - 179,750,415	UniSTS
Cytogenetic Map	2	H4	UniSTS
cM Map	2	103.0	UniSTS

AI840687

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	173,784,197 - 173,784,283	UniSTS	GRCm38
MGSCv37	2	173,609,698 - 173,609,784	UniSTS	GRCm37
Celera	2	179,750,927 - 179,751,013	UniSTS
Cytogenetic Map	2	H4	UniSTS
cM Map	2	103.0	UniSTS
Whitehead/MRC_RH	2	1939.7	UniSTS

R75548

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	173,783,016 - 173,783,193	UniSTS	GRCm38
MGSCv37	2	173,608,517 - 173,608,694	UniSTS	GRCm37
Celera	2	179,749,746 - 179,749,923	UniSTS
Cytogenetic Map	2	H4	UniSTS
cM Map	2	103.0	UniSTS
Whitehead_YAC	2		UniSTS

RH125260

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	173,782,980 - 173,783,169	UniSTS	GRCm38
MGSCv37	2	173,608,481 - 173,608,670	UniSTS	GRCm37
Celera	2	179,749,710 - 179,749,899	UniSTS
Cytogenetic Map	2	H4	UniSTS
cM Map	2	103.0	UniSTS

UniSTS:234622

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	173,778,440 - 173,778,521	UniSTS	GRCm38
MGSCv37	2	173,603,941 - 173,604,022	UniSTS	GRCm37
Celera	2	179,745,170 - 179,745,251	UniSTS
Cytogenetic Map	2	H4	UniSTS
cM Map	2	103.0	UniSTS

AI848259

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	173,781,914 - 173,781,998	UniSTS	GRCm38
MGSCv37	2	173,607,415 - 173,607,499	UniSTS	GRCm37
Celera	2	179,748,644 - 179,748,728	UniSTS
Cytogenetic Map	2	H4	UniSTS
cM Map	2	103.0	UniSTS
Whitehead/MRC_RH	2	1939.7	UniSTS

D2Abb2e

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	2	H4	UniSTS
cM Map	2	103.0	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF115504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK045725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK048417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK048686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK050632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK081908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK172080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK182293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK203828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK205322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL844849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL845503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC024562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC048231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC057123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000067530 ⟹ ENSMUSP00000064699

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	173,579,304 - 173,626,132 (+)	Ensembl
GRCm38.p6 Ensembl	2	173,737,511 - 173,784,339 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000154306

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	173,609,993 - 173,619,918 (+)	Ensembl
GRCm38.p6 Ensembl	2	173,768,200 - 173,778,125 (+)	Ensembl

RefSeq Acc Id:

NM_019806 ⟹ NP_062780

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	173,579,378 - 173,626,132 (+)	NCBI
GRCm38	2	173,737,571 - 173,784,336 (+)	ENTREZGENE
MGSCv37	2	173,563,072 - 173,609,837 (+)	RGD
Celera	2	179,705,544 - 179,751,066 (+)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

TGCGTGGGTACGTCGTGCGTGCCGTGAGCTCGCCCGGCACCGCGGCCTCGCCCTCCGCCCCTGC
GCCCCGCCACCCAGGCCGCCGCCCCCCGCCCGCGCCGTCGCCCCCGACGGGGAGGACCATGGCG
AAGGTGGAACAGGTCCTGAGCCTCGAGCCACAACACGAGCTCAAGTTCCGAGGTCCCTTCACTG
ATGTTGTCACCACCAACCTAAAGCTTGGCAACCCAACAGACCGAAATGTGTGTTTTAAAGTGAA
GACCACAGCACCTCGCAGGTACTGCGTGCGGCCCAACAGTGGGGTCATTGATGCCGGGGCCTCT
CTCAATGTGTCTGTGATGTTACAGCCTTTCGATTATGATCCCAATGAGAAAAGTAAACACAAGT
TTATGGTTCAGTCTATGTTTGCTCCGCCTGACACTTCTGATATGGAGGCAGTATGGAAGGAGGC
AAAACCGGAAGACCTTATGGATTCAAAACTTAGATGTGTGTTTGAATTGCCAGCAGAAAATGCT
AAACCACATGATGTAGAAATAAATAAAATCATACCTACGAGTGCATCCAAGACAGAAGCACCGG
CAGCCGCAAAGTCCCTGACATCGCCCCTCGATGACACAGAAGTAAAGAAGGTGATGGAAGAGTG
CAGGCGGCTGCAGGGGGAGGTGCAGAGGCTTCGGGAGGAGAGCAGGCAGCTCAAGGAAGAAGAC
GGACTTCGGGTGAGGAAGGCGATGCCGAGCAACAGCCCCGTGGCGGCTCTGGCGGCCACTGGGA
AGGAGGAGGGCCTGAGCGCCCGGCTGCTGGCCCTGGTGGTTCTGTTCTTTATCGTTGGTGTCAT
TATAGGGAAGATTGCCTTGTAGGGGCCGCATGCGAAGGATGGCAGGTTGGATTGATGGATCTAC
CACACCATGGGATTCAAATTTATCATAACCATGCGTAAAAAGAAATTAATGTATGACGGCATCT
CACAGGTCTTGCCTTTAAATACCCCTCCCCATGCACACACAAATGCACACACAAATATAGCATA
ATATAATGATCTTTTAGAAAGTTAAAAATGTATAGGGAATGGATGGGGAAAGAATGGTCTGTTG
CCGTAGGACGGGCCGTGATTAACCACAGTGGCATCTTGTAGCTGTCACGCTCAATTCGGGTAGG
CCTGGGCACGTGTTGCTAGATCACTCTCTTAAAGCAAGAAGCTCCTCCTCGCATGTTGGGGCTG
GCCCGTGGGAGCGGGAGTCCTGCAAGGTGGGGCGAGCTGTCTTTTTCTTACCCACGTGGCTTCC
CCAGGCCTGCTGTTCTGTCCAGGCATCGTCTCCTCAGGCCTACAGAGCTGCAGGTGCCAAAGTG
CATTGCACAGAGGCCACATCTCGTGTACCTGTGGGTCGTGTGGGAGAGACATGAGTGGACCAGC
GGGTCCAACACAGGGAAATCCAAGTCTGTGCTCTGTTCTCTTGAAGGGACCAAGCTAAATTACC
GCTGGTTCAAGTAGTGAACCGAGTTGTTCTCGGAGATGGCTGATGCACATGTAACCTATTTCAT
CTCGTGTGTTCCTGCTGCCACCAGAGCACAGGCAGTGAGTGCTGCAGACCGCCAGTGAGGAGCT
GCTGCTGTGGGCTCTGGAGGTCTGAGGGAAGGGGAGGGTCTGAGTCAGGAAGTGTTTTGTTGTA
GGTCAGTAATAGCTGCCCTGAGGAGGAACGCTCTTTTTAATGACAGTCAGCTCTGGATTACCCA
GTCTTCTAGATTGCCCTACCATCCATCCTTCTAAAACATAGGCCAGCCTTGACCTGCCCTTCTC
AGGATGAGTGAGTCAGGCTGCAGAGGGTGAAGGGCATAGAGGGGGTGGGGTGGGGTGGGGGAGC
CCTCAGCAAATCCATCTGCTGGTGATGAAGAGTCCTGACTGTGAATTAATTTCATGCCATAAAA
GACCGATCCAGTTCTGCTCAACTATGTAGCATCTTAAAGGAAGAGATTAAAATAAAGCCCCAAA
TTAAGAGTCCTTTTGTCATTTTGTCACATTTGCTGTGTGGGGTTCTTATTATCAATCATCGTTA
GTGTGCTATGGAAGGTTGATTTTAAAATGAGCTCTATCAGTGGGAAACACATGTGTAATGATTT
GACTCTGCACACATCTGTGTACACACGCACACACATATATTACTATTACTTTTATTATTATATT
TTGGTTGGCTTCAGCTTAACAGCAGGAGCCATCTCAGGCTGGCTGTCCTTCCCCTTCTGTGACC
TTGGCCCTTCAGTGACAGGCCTGAGTCTGAGAGGACAAGCCCATCTAAAGGAAGACTGGCCTAG
ACACCCGAGATCACACTGCTGCTGTGCCTGAGTGGGCGGGTGGGAGCTGGAGACGGGGGGGGGG
GGGGGGGGCACTGGGCGGTAAGCAGCCCTGCCCGCTCTAATGCCTCTTACCGAGTTTCCAGACC
CTTTCCGTGTGCCTGAAGGAGGGAGGGTACGACTGAGCTGAGGGTGAGGTCTGAGCTGCCACCT
GGCTTCCCTTGCTACACTGAGAGGTTCAGCAGTCTCAGGTGCTGCCAGTAATCCTTTTGCAGCT
TTTGAGGGCAGAGTAACTCAGTGCCTCTGACAGGACCTGGGGTGTCATCTAGCTCTACGACACA
GGAGCCGGGGTTTGCAAGTGTTCTTAAGGGATGGATGGCTCTGTGTGCCAGAAAAGCTCTTGAG
AGGCACAGCCAGCTGCCGAGATTAAAGCGTGTCTGGGAGCTGCCGTGGCTTGGGCCATGGAAGG
TGATTGTGTGAACGCTGTCAGAATGCTCTAAGAGGGCCAGAGGTTGTAGACACTTCTGCAGTAG
CAGCAACAACAAAAACTCCAGATACAAGGGTATCCTTCCTTTGTCTGGCCCTCGGAAGTCTGAC
CTCGGAGAGATGCCTGGCAGTGTGGTAGTTGTTGGGGCTTCTTGACCAAGGGGATGATGGGAGC
TCTAGGGAGGTTAGCAAGGCAGAGTGGGTAAATCTCCGAGTCACCGTCACTCATGAGTGCTGTA
AGAGAGGTGTCAGTAAGAAGCGTACTTGCCTGTGGGCTCTAAAGAGAGCTGTGCACATTTGGGG
TGTCTTTTCTGAAAATCTCAGAGCAGATAAACCTGAGTAAGACACAGAAGAGGTGAGTTTCACT
CTGTACTACAACTCTGCTGTCTCCAAAGAAGACAGAGTCAGGTGTTCTGGGAGGTGTGAAGCTG
AGAGCTAGGAGAGCAGCCATGAGGCAGCCAGGGCAGGTCCTCCATGGTTACAGGGCCCGCTGCC
CCTCCTTATTAAGTGCCTCGGCTTTGGAAGCGCAGCCACCGTGCTCACAGATGGACACAGTAGC
AGAGTCCCACCAACTGCTATTGATTGAATTTCCAAGTTGATAATTTAAGCTTGGAAAGAGACAG
AGCACCTCTTAGACACAGTGAGCACTATTATCTGTCCGTGTGAGGCCCTGGCTTTAATTTTCTT
CTCCTCCTACTTTGCATGTTTTCCCTCTCTGGTCTTTTAAACTGCTGGCACCAGCAGTAATAAA
TACTGATAAAATCAAAATTGATTTTTACCAGTGGACAGTTTATGCCTAGAGAGACGGCTTATAC
CTACATAACACAGAAGGGGGAATGAGGAGCCTCCAGTGAGCCGTGAAAAGCTGACTGCTTTCAA
ACAAATCCTAGGAACAGCATTGCTGTGTGAAGATAGCAGTACCCAGCCTGCAGGCTGTGTTGAC
TCAGACAGAACTGAATGCAGCCAGAGCTAAATAGCCCCTCAGATTAATTTGAAAACAAGCCCCG
AGTGTGCATGTGTGTGTTTGTGTGTAGCATATGTGCCATGTGTAAGCAGCCTGACAGTTCCCAA
ATGGTGCCTGTAGTTTTTTTTTTTGCACACAGATCTTGGTGTTTTCAAACTCAGAGTCCACGCC
AAAATGCAGTATCGTTTTGTCATTTTCAGGCTTCTCAAAATTAACTGGCTTGAATGCAAATTTC
TAGTTACAGTTTGCAAAAACCTTTATTTTAAGGGAGAGACTGGGACACGGGACAGTTGGTCCTG
TGATCTAGGTCATTCTGTATTCCTGAGTGACGTTCTCCTTCCCAGGCCTTCTCCAGTATAGAGG
CCCATGCTCCCCTCGCTGCTGTGGTAGCTGTGTCGTCTCCTGTGGACCCTGTGCTGTGACAGAG
GGGAAGAGTAAACTTTGTAAGTAACCGGAAGGCAGGCACTAGACTCGTCCTAGTTACATTTGGC
CTTGTCTGCTGTTACTGAGAATGAATGCTTCTCAGAGCCCAGCAGAAATGCAATTGTGTTTAAC
ACTCCCCTGCAGAGCATAGATGGACAGATGCAGCATAGGTGAGGCTGGGCGATCATTCTCTGGG
ATCATGGCCCGATGGCTCCCTCAGGGTTCCCTGGCCTGATTGGACTTGGAGGAGGTCTTTCCTC
TCCCCAGACAGAGCTACAACTGTGGGAACCTTTGTCAACACTACCCTGGCTGCAGAGCACCTCA
CAAAACCGCAAGTTAGGCTCTGCCCTGTAAAAAAGACCCAGTGCGTGGAGGTGGGCAGCATTTT
AGTTTGGAACTAAATGAGCCCCAGTTTGTGTGTGCATGCTAAAGCACTGCTTGTTGGAGATCTG
CACATCAATGAAGGGAACAAGGCGGAGGGAGGTATCTGCTCCAGGCACCTCAGCTCACCAGCCG
CCGCGTCTGCCACCCTGATGCAGCTGCTGTTTCCAGGCTGAGCAGGAGGAAGAGCCAGGGCTCT
AGTGTGACCTGAACACATCCCACAAGATAAATGCATATGGTTGTTTCCATTTCGCTCACTGCCC
ATGTGCCTGGGGAATTGTGGAAGCTTTAGAAAGAAAATTACCACTGTGTCTCAGTGAGGTGAGG
CTGCTGTGTCTGGAGGCTCCTCATAACTTGTAAATTAAATGTGAATGAGAGAAGTTCATTAAAA
TTGGCATTATAGAAGTGGCCTATTGAGATTTGAAAGCAGCTGAGCTCATGGTGTCTGGGCTCCC
TCTAAACCTGTGGAGAAATGCATGAACAAGTGACAGGCGACAGTCACAGGAGCATAGGGCGCAG
GCAGCTTGGGCGCTGTGAGTGGATCGCTGCCTGGCTCCCTGCCCTCTGACTGTTACTGCATGTT
CAACACATGAGGCTCTGCCACTAAGAATATTTGCTGTTTGGAGTGCACAAGGGAGGGGACTAGT
GCCATTTCCACAGCAGTGCGGACATTGTTTTCATTTATTCCCAGCACATAGGTATGTGTAAACA
TTTTAAAGGCACAGCACACACAAACATCTGTGTATTATGGTTCAGAGAGATACCGGGAAGGTGG
AAGAGAGGTGGATACAGCGAATATAATAATTACTTTAATTTTTCTCCTTAATGGAATTAATGAA
TTAGAAGATGTGTGCTTCTGCTCTACAGAAAAGGAAGGAAAGCTAACAGTAAAAAAACACAGCT
ATTATCCACCTCGCCACAAATGTTTGCAGTTATGCTACCTTGGAATTTTGCCACAGTGTGGGTT
CCACTGATGAAAAGATGTGACTGGGAAGAAGAGTGACTGCGCGTCGCTGAGCACTGCAGCCTGT
AAATGCTGCTGTTTCTTTTGAACCAGGAAGCACTGGTCCTGTAACAATGCCCTATTACAGTTGC
TGTATTGCAGCGAGGGGCTGATGCGGGTTTAATCATCTCTCTAATGGATGTGGGTGCAGGATAG
ATGCTCTGTCCTGCTTCCCTGCCTGCATCCTGATGAGCCTCTGTAGCCATCAGGGCTGCTGTGT
ACTGGAGCAGCAGCTGCAGTTCCGTGTCTGTCCGAAATAAAACAGATCACCTGTTCCTCTCTGC
CTCTCTCAGAAGACACCAACTATGGGAGACAAATCAGATCTTTTAACACAATCTCATTAAGGCT
CCATGCTAACAGGAGTACAGAGCTTACATGACGTACGGACGTGATAAATTATCATGCACGCTCT
ACACGTCAACTCATCAGCTCTCCCTGTAACACAGAAAGAAAGGCCTCCATCTTTTTTATGGTCG
GGCTGCCTGCATTCCCATCTCTTTGCTTTTTAGGAAGTAAACTAAATTCAGCTGCTAGCCCTCT
AGTGCAGCATTTATTTAAAAGAAAAAAAAAATGCCTTTTCCCATTGAGTCTCTTACATGGCCTC
AAAGGCAAGAATTTATTGTCTGTGATAGTGAAACCCGTGTGTACAAAACTGCCTCCTGTTCATG
ATCCATGTGGCAGATGTTCCTAAATCGCTGCCTCTATTTTCCATACAACGAGGTCCTCAGAAAA
TAACCAGCAGGATTCATTTAGTGATTGTGTGGTTCACTGGTAAGCAGTCTTAAGTGCAAAATGC
ATCAGGCTTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTGTTTT
GGTTTTTAAATAAAATATATGAACTGCTGGCATTTGGAACTTCCTATAATAAACACAATATAAT
GTTCCCGTCACTGGCCCCTCCTCGTGGAGGAGAGACACAGTCTCAGTAATTCCCCATCCGGTTT
TACATCTTTTCTCATCTCTAAAAATCTCTGCAGCCTGTGACTGTGCATGTCACTTCTGACCTCA
GGATATGTCAACATTTTAGGGACTGAGCATTTTAAGGGGTGTTTTAGAATGCTGTTCTTCCCTG
ATCTCTCCTTTATGCTTTTAAGCTGTATTTCCTGTTCTGGTGTGGGACTCGTTCACAGAATCAG
AGCACGGAGGGACTCTGTCGTGGTGCACGTTGGTTGTCTGATGTGTGATAAATCCATGGTTTTA
TGGCTAACTTTACATTTTCCAGAGGAAAGGAAACGGATTTCTAGTGTCCAGACCAAAAGAGCCA
TTCACCCAGAGTTCTCACCTGTTGTATACTGGTCTGATGAAACCTGCCCTGACTCGGCCTAAAC
TTCCGTATGAGCTGTCTCCATATAATGTTCAATAAATTGTGTGCTCTGAATGTATGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_062780	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF23077	(Get FASTA)	NCBI Sequence Viewer
	AAH48231	(Get FASTA)	NCBI Sequence Viewer
	AAH57123	(Get FASTA)	NCBI Sequence Viewer
	BAC32473	(Get FASTA)	NCBI Sequence Viewer
	BAC34353	(Get FASTA)	NCBI Sequence Viewer
	BAC38368	(Get FASTA)	NCBI Sequence Viewer
	BAE36093	(Get FASTA)	NCBI Sequence Viewer
	BAE42816	(Get FASTA)	NCBI Sequence Viewer
	EDL06655	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000064699
	ENSMUSP00000064699.5
GenBank Protein	Q9QY76	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_062780 ⟸ NM_019806

- UniProtKB:

Q9QY76 (UniProtKB/Swiss-Prot), Q8BH80 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAG
ASLNVSVMLQPFDYDPNEKSKHKFMVQSMFAPPDTSDMEAVWKEAKPEDLMDSKLRCVFELPAE
NAKPHDVEINKIIPTSASKTEAPAAAKSLTSPLDDTEVKKVMEECRRLQGEVQRLREESRQLKE
EDGLRVRKAMPSNSPVAALAATGKEEGLSARLLALVVLFFIVGVIIGKIAL

hide sequence

Ensembl Acc Id:

ENSMUSP00000064699 ⟸ ENSMUST00000067530

Protein Domains

MSP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QY76-F1-model_v2	AlphaFold	Q9QY76	1-243	view protein structure

Promoters

RGD ID:

6833054

Promoter ID:

MM_KWN:33282

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, Kidney, Liver, Lung, MEF_B6

Transcripts:

OTTMUST00000039412

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	173,562,759 - 173,563,259 (+)	MPROMDB

RGD ID:

6833056

Promoter ID:

MM_KWN:33283

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Kidney

Transcripts:

OTTMUST00000039413

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	173,593,841 - 173,594,341 (+)	MPROMDB

RGD ID:

6879934

Promoter ID:

EPDNEW_M3418

Type:

initiation region

Name:

Vapb_1

Description:

Mus musculus vesicle-associated membrane protein, associatedprotein B and C , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	173,737,585 - 173,737,645	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1928744	AgrOrtholog
Ensembl Genes	ENSMUSG00000054455	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000067530	ENTREZGENE
	ENSMUST00000067530.6	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Ig-like_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MSP_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PapD-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	VAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:56491	UniProtKB/TrEMBL
MGD	MGI:1928744	ENTREZGENE
NCBI Gene	56491	ENTREZGENE
PANTHER	PTHR10809	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN B/C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Motile_Sperm	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Vapb	PhenoGen
PIRSF	VAMP-associated	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	MSP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF49354	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	Q3TA54_MOUSE	UniProtKB/TrEMBL
	Q3TU78_MOUSE	UniProtKB/TrEMBL
	Q8BH80	ENTREZGENE, UniProtKB/TrEMBL
	Q8BR39_MOUSE	UniProtKB/TrEMBL
	Q9QY76	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Mammalian Phenotype