Grid1 (glutamate ionotropic receptor delta type subunit 1)

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Gene: Grid1 (glutamate ionotropic receptor delta type subunit 1) Rattus norvegicus

Analyze

Symbol:

Grid1

Name:

glutamate ionotropic receptor delta type subunit 1

RGD ID:

68366

Description:

Enables identical protein binding activity. Predicted to be involved in several processes, including glutamatergic synaptic transmission; regulation of postsynapse organization; and social behavior. Located in postsynaptic membrane. Orthologous to human GRID1 (glutamate ionotropic receptor delta type subunit 1); INTERACTS WITH (S)-nicotine; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GluD1; gluR delta-1 subunit; glutamate receptor delta-1 subunit; glutamate receptor ionotropic, delta-1; glutamate receptor ionotropic, delta-1-like; glutamate receptor, ionotropic, delta 1; LOC103690098

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	10,138,564 - 10,885,803 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	10,138,925 - 10,885,808 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	10,153,103 - 10,906,564 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	11,297,808 - 12,051,305 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	10,148,154 - 10,890,093 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	11,170,831 - 11,932,197 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	11,599,753 - 11,932,324 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	9,495,903 - 10,248,095 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	16	12,219,210 - 12,273,260 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	10,473,353 - 11,202,161 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	10,473,350 - 11,202,159 (+)	NCBI
Celera	16	4,341,706 - 5,080,716 (-)	NCBI		Celera
Cytogenetic Map	16	p15	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colorectal Neoplasms (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

acrylamide (EXP)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

aristolochic acids (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

chlorpyrifos (EXP)

choline (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

dichloroacetic acid (ISO)

dieldrin (EXP)

ethanol (EXP)

folic acid (ISO)

fulvestrant (ISO)

L-methionine (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

menadione (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

N-Nitrosopyrrolidine (ISO)

nicotine (EXP)

O-methyleugenol (ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP,ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ionotropic glutamate receptor signaling pathway (IEA)

modulation of chemical synaptic transmission (IBA)

monoatomic ion transmembrane transport (IEA)

regulation of postsynapse organization (IEA,ISO)

regulation of postsynaptic membrane potential (IEA)

social behavior (IEA,ISO,ISS)

synaptic transmission, glutamatergic (IBA)

Cellular Component

GABA-ergic synapse (IEA,ISO)

glutamatergic synapse (IEA,ISO)

plasma membrane (IBA)

postsynaptic density membrane (IBA,IEA,ISO)

postsynaptic membrane (IDA,ISO)

Molecular Function

glutamate receptor activity (IBA)

glutamate-gated receptor activity (IEA)

identical protein binding (IPI)

protein binding (ISO)

transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Cryo-EM structures of the ionotropic glutamate receptor GluD1 reveal a non-swapped architecture.	Burada AP, etal., Nat Struct Mol Biol. 2020 Jan;27(1):84-91. doi: 10.1038/s41594-019-0359-y. Epub 2020 Jan 10.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Differential localization of delta glutamate receptors in the rat cerebellum: coexpression with AMPA receptors in parallel fiber-spine synapses and absence from climbing fiber-spine synapses.	Landsend AS, etal., J Neurosci. 1997 Jan 15;17(2):834-42.
4.	The rat delta-1 and delta-2 subunits extend the excitatory amino acid receptor family.	Lomeli H, etal., FEBS Lett 1993 Jan 11;315(3):318-22.
5.	Identification of rat EMAP, a delta-glutamate receptor binding protein.	Ly CD, etal., Biochem Biophys Res Commun 2002 Feb 15;291(1):85-90.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	GOA pipeline	RGD automated data pipeline
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
12.	PKC regulates the delta2 glutamate receptor interaction with S-SCAM/MAGI-2 protein.	Yap CC, etal., Biochem Biophys Res Commun 2003 Feb 21;301(4):1122-8.

Additional References at PubMed

PMID:19056867	PMID:22412961	PMID:25001082

Genomics

Comparative Map Data

Grid1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	10,138,564 - 10,885,803 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	10,138,925 - 10,885,808 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	10,153,103 - 10,906,564 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	11,297,808 - 12,051,305 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	10,148,154 - 10,890,093 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	11,170,831 - 11,932,197 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	11,599,753 - 11,932,324 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	9,495,903 - 10,248,095 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	16	12,219,210 - 12,273,260 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	10,473,353 - 11,202,161 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	10,473,350 - 11,202,159 (+)	NCBI
Celera	16	4,341,706 - 5,080,716 (-)	NCBI		Celera
Cytogenetic Map	16	p15	NCBI

GRID1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	85,599,552 - 86,366,795 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	85,599,552 - 86,366,795 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	87,359,309 - 88,126,552 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	87,349,292 - 88,116,230 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	87,349,291 - 88,116,230	NCBI
Celera	10	81,354,751 - 82,123,191 (-)	NCBI		Celera
Cytogenetic Map	10	q23.1-q23.2	NCBI
HuRef	10	81,205,202 - 81,976,286 (-)	NCBI		HuRef
CHM1_1	10	87,641,441 - 88,407,991 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	86,479,694 - 87,247,328 (-)	NCBI		T2T-CHM13v2.0

Grid1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	34,541,751 - 35,305,344 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	34,542,065 - 35,305,336 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	34,820,003 - 35,583,387 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	34,820,108 - 35,583,379 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	35,633,322 - 36,394,301 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	33,649,258 - 34,409,989 (+)	NCBI		MGSCv36	mm8
Celera	14	31,078,546 - 31,813,276 (+)	NCBI		Celera
Cytogenetic Map	14	B	NCBI
cM Map	14	20.84	NCBI

Grid1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955510	4,905,518 - 5,562,464 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955510	4,902,908 - 5,563,924 (-)	NCBI	ChiLan1.0	ChiLan1.0

GRID1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	10	97,589,559 - 98,367,426 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	82,017,436 - 82,795,410 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	85,585,863 - 85,905,944 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	85,586,147 - 86,353,410 (-)	Ensembl	panpan1.1		panPan2

GRID1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	33,516,893 - 34,155,573 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	33,516,911 - 34,156,416 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	33,507,774 - 34,146,714 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	33,840,008 - 34,487,774 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	33,840,085 - 34,488,086 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	33,701,344 - 34,360,808 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	33,891,193 - 34,530,266 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	34,396,023 - 35,035,357 (-)	NCBI		UU_Cfam_GSD_1.0

Grid1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	44,376,827 - 45,074,447 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936804	488,427 - 1,182,100 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936804	487,609 - 1,182,335 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GRID1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	86,539,916 - 87,227,133 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	86,539,896 - 87,227,089 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	93,398,091 - 93,510,559 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GRID1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	45,485,219 - 46,265,186 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	5,607,524 - 6,403,324 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Grid1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624841	652,272 - 1,390,917 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624841	651,497 - 1,393,482 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Grid1
5438 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	79
Count of miRNA genes:	58
Interacting mature miRNAs:	72
Transcripts:	ENSRNOT00000033838
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	1	22477621	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26727669	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26727669	Rat
1582235	Insul8	Insulin level QTL 8	3.3	0.0063	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	16	1	26727669	Rat
9590151	Scort8	Serum corticosterone level QTL 8	8.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	16	1	30836262	Rat
2302380	Slep6	Serum leptin concentration QTL 6	3.36		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	1	32139025	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33418960	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39533930	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39533930	Rat
631561	Hcuc2	Hepatic copper content QTL 2	2.8		liver copper amount (VT:0003065)	liver total copper weight (CMO:0001507)	16	1	39533949	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	1	43534949	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	1	44588133	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	44977551	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	832236	46053497	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	2851709	15884239	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3380150	21361552	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3380150	43025077	Rat
737825	Alc13	Alcohol consumption QTL 13	4.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	16039848	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	43025077	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4227609	43025077	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
61372	Bp40	Blood pressure QTL 40	2.2		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	16	4227730	17696785	Rat

Markers in Region

D16Got14

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	10,864,416 - 10,864,617 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	12,357,164 - 12,357,364	NCBI	Rnor6.0
Rnor_6.0	16	11,910,811 - 11,911,011	NCBI	Rnor6.0
Rnor_5.0	16	12,251,887 - 12,252,087	UniSTS	Rnor5.0
Rnor_5.0	16	10,226,709 - 10,226,909	UniSTS	Rnor5.0
RGSC_v3.4	16	11,180,775 - 11,180,975	UniSTS	RGSC3.4
RGSC_v3.4	16	11,180,774 - 11,180,975	RGD	RGSC3.4
RGSC_v3.1	16	11,180,773 - 11,180,973	RGD
Celera	16	4,362,894 - 4,363,096	UniSTS
RH 3.4 Map	16	100.31	UniSTS
RH 3.4 Map	16	100.31	RGD
Cytogenetic Map	16	p15	UniSTS

Grid1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	10,885,334 - 10,885,466 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	12,378,083 - 12,378,214	NCBI	Rnor6.0
Rnor_6.0	16	11,931,729 - 11,931,860	NCBI	Rnor6.0
Rnor_5.0	16	10,247,627 - 10,247,758	UniSTS	Rnor5.0
Rnor_5.0	16	12,272,806 - 12,272,937	UniSTS	Rnor5.0
RGSC_v3.4	16	11,201,693 - 11,201,824	UniSTS	RGSC3.4
Celera	16	4,342,043 - 4,342,174	UniSTS
Cytogenetic Map	16	p15	UniSTS

RH143103

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	10,422,748 - 10,422,963 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	11,458,765 - 11,458,979	NCBI	Rnor6.0
Rnor_5.0	16	9,778,870 - 9,779,084	UniSTS	Rnor5.0
RGSC_v3.4	16	10,785,242 - 10,785,456	UniSTS	RGSC3.4
Celera	16	4,797,053 - 4,797,267	UniSTS
RH 3.4 Map	16	100.3	UniSTS
Cytogenetic Map	16	p15	UniSTS

AU048365

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	10,462,409 - 10,462,594 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	11,498,404 - 11,498,588	NCBI	Rnor6.0
Rnor_5.0	16	9,818,509 - 9,818,693	UniSTS	Rnor5.0
RGSC_v3.4	16	10,824,036 - 10,824,220	UniSTS	RGSC3.4
Celera	16	4,757,768 - 4,757,946	UniSTS
Cytogenetic Map	16	p15	UniSTS

BF390373

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	10,169,258 - 10,169,415 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	11,201,257 - 11,201,413	NCBI	Rnor6.0
Rnor_5.0	16	9,526,329 - 9,526,485	UniSTS	Rnor5.0
RGSC_v3.4	16	10,503,778 - 10,503,934	UniSTS	RGSC3.4
Celera	16	5,050,861 - 5,051,017	UniSTS
RH 3.4 Map	16	97.11	UniSTS
Cytogenetic Map	16	p15	UniSTS

UniSTS:143254

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	10,885,342 - 10,885,495 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	12,378,091 - 12,378,243	NCBI	Rnor6.0
Rnor_6.0	16	11,931,737 - 11,931,889	NCBI	Rnor6.0
Rnor_5.0	16	10,247,635 - 10,247,787	UniSTS	Rnor5.0
Rnor_5.0	16	12,272,814 - 12,272,966	UniSTS	Rnor5.0
RGSC_v3.4	16	11,201,701 - 11,201,853	UniSTS	RGSC3.4
Celera	16	4,342,014 - 4,342,166	UniSTS
Cytogenetic Map	16	p15	UniSTS

AU049780

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	10,553,449 - 10,553,583 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	11,588,209 - 11,588,342	NCBI	Rnor6.0
Rnor_5.0	16	9,909,146 - 9,909,279	UniSTS	Rnor5.0
RGSC_v3.4	16	10,917,848 - 10,917,981	UniSTS	RGSC3.4
Celera	16	4,667,818 - 4,667,951	UniSTS
Cytogenetic Map	16	p15	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									64
Low	3	32	17	6	8	6			10	22	39	3
Below cutoff		11	22	17	10	17	8	11		13	2	8	8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_024378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U08255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Z17238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000079833 ⟹ ENSRNOP00000073010

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	10,138,925 - 10,885,808 (+)	Ensembl
Rnor_6.0 Ensembl	16	11,599,753 - 11,932,324 (+)	Ensembl

RefSeq Acc Id:

NM_024378 ⟹ NP_077354

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	10,138,835 - 10,885,803 (+)	NCBI
Rnor_6.0	16	11,170,831 - 11,932,197 (+)	NCBI
Rnor_5.0	16	9,495,903 - 10,248,095 (+)	NCBI
RGSC_v3.4	16	10,473,353 - 11,202,161 (+)	RGD
Celera	16	4,341,706 - 5,080,716 (-)	NCBI

Sequence:

show sequence

CCCGCGGGGGAAGACGCACGGGCGGGCTCGGCTCTCCCGGGGAGCGGCCCGGGACTGCACCGGG
ACCGGCGCCTCCCCGCTCCGGCTGCCCTCGGCCTCGCCCCGGGCCCGGGCGGATGAGCCGGGGG
CCCGGGGGGACATGGAAGCGCTGACGCTGTGGCTTCTTCCCTGGATATGCCAGTGCGTTACGGT
GCGGGCCGACTCCATCATCCACATCGGTGCCATCTTCGAGGAGAACGCAGCCAAGGACGACAGG
GTGTTCCAGTTGGCTGTATCAGACTTGAGCCTCAATGATGACATCCTGCAGAGTGAGAAGATCA
CCTACTCCATCAAGGTCATCGAGGCCAATAATCCGTTCCAGGCGGTGCAGGAAGCCTGTGACCT
CATGACCCAGGGGATTTTGGCCTTGGTCACGTCCACGGGCTGTGCATCTGCCAACGCCCTGCAG
TCCCTCACAGACGCCATGCACATCCCACACCTCTTTGTCCAGCGCAACCCCGGGGGTTCACCAC
GTACTGCCTGCCACCTGAACCCTAGCCCCGACGGCGAGGCCTACACACTGGCTTCGAGACCGCC
CGTCCGTCTCAATGATGTCATGCTCAGGCTGGTGACAGAACTGCGCTGGCAGAAGTTCGTCATG
TTCTATGACAGCGAGTATGATATCCGTGGGCTCCAAAGCTTTCTGGATCAGGCCTCACGGCTGG
GTCTTGACGTCTCTTTACAAAAGGTGGACAAGAACATCAGTCACGTGTTCACCAGCCTCTTCAC
CACCATGAAGACGGAGGAGCTGAATCGCTACCGGGACACACTGCGCCGGGCCATCCTCCTGCTT
AGCCCACAGGGGGCGCACTCGTTCATCAACGAGGCTGTGGAGACCAACTTGGCTTCCAAGGACA
GCCACTGGGTCTTCGTGAATGAGGAAATCAGTGACCCCGAGATCCTGGATCTGGTCCACAGTGC
CCTTGGCAGGATGACCGTGGTCCGGCAAATCTTCCCATCTGCAAAGGACAACCAGAAATGCATG
AGGAATAACCACCGCATCTCTTCCCTGCTCTGTGATCCACAGGAAGGCTACCTCCAAATGCTGC
AGATCTCCAATCTCTATCTGTACGACAGTGTTCTGATGCTGGCCAACGCCTTCCACAGGAAGCT
GGAAGACCGGAAGTGGCATAGTATGGCAAGCCTTAACTGCATACGGAAATCTACCAAGCCATGG
AATGGAGGGAGATCCATGCTAGACACCATTAAAAAGGGACACATCACCGGCCTCACAGGAGTTA
TGGAGTTTCGGGAAGACAGCTCAAATCCCTATGTCCAGTTTGAAATCCTTGGCACAACCTATAG
TGAGACTTTTGGCAAAGACATGCGCAAGCTGGCGACCTGGGACTCAGAGAAGGGCCTGAATGGC
AGTCTGCAGGAGAGACCCATGGGCAGCCGCCTCCAAGGACTGACTCTCAAAGTGGTGACTGTCT
TGGAAGAGCCTTTTGTGATGGTAGCTGAGAATATCCTTGGACAGCCCAAGCGTTACAAAGGGTT
CTCCATAGATGTGCTGGATGCATTGGCTAAAGCTCTCGGATTCAAATACGAGATATACCAGGCC
CCTGATGGCAGGTATGGCCACCAACTCCATAACACTTCCTGGAACGGGATGATCGGGGAGCTCA
TTAGCAAGAGAGCAGACTTGGCCATCTCTGCTATTACCATCACCCCGGAGAGAGAGAGCGTTGT
GGACTTCAGCAAGCGATACATGGACTACTCAGTGGGGATCCTCATCAAGAAGCCGGAGGAGAAA
ATCAGCATCTTCTCCCTTTTCGCCCCCTTTGACTTTGCGGTGTGGGCCTGCATTGCTGCAGCCA
TTCCCGTGGTGGGTGTGCTCATATTCGTGTTGAATCGGATACAGGCTGTAAGGTCTCAGAGTGC
CACCCAGCCTCGGCCCTCAGCTTCTGCGACTTTGCACAGTGCCATCTGGATCGTCTATGGAGCC
TTTGTCCAGCAAGGTGGTGAGTCTTCGGTGAACTCTGTGGCCATGCGCATCGTGATGGGCAGCT
GGTGGCTCTTCACGCTCATTGTATGTTCCTCCTACACAGCCAACCTTGCTGCTTTCCTCACAGT
GTCCAGGATGGACAGCCCCGTAAGAACATTTCAGGACCTGTCCAAGCAACTGGAGATGTCTTAT
GGCACTGTCCGGGACTCTGCTGTCTATGAGTACTTCAGAGCCAAGGGGACCAATCCCCTGGAGC
AGGATAGCACTTTTGCTGAGCTCTGGCGGACCATAAGCAAGAATGGAGGGGCTGACAACTGTGT
GTCCAATCCTTCAGAAGGTATCAGGAAGGCAAAGAAGGGGAACTACGCCTTTCTGTGGGATGTG
GCCGTGGTTGAGTATGCAGCCCTGACAGATGACGACTGCTCAGTGACTGTCATCGGCAACAGCA
TCAGCAGCAAGGGCTATGGGATTGCCCTGCAACATGGCAGCCCCTACAGGGACCTCTTCTCCCA
GAGGATCCTGGAGCTGCAAGACACAGGGGACCTGGATGTGCTCAAGCAGAAGTGGTGGCCACAC
ACAGGCCGCTGCGACCTCACCAGCCATTCCAGTGCACAGACTGATGGTAAATCCCTTAAGCTGC
ACAGCTTCGCTGGGGTCTTCTGCATTTTGGCCATTGGCCTCCTTCTCGCCTGCCTCGTGGCTGC
TCTAGAGTTGTGGTGGAACAGCAACCGGTGCCACCAGGAGACCCCCAAAGAGGACAAAGAAGTG
AATCTGGAACAGGTGCACCGGCGCATCAACAGCCTCATGGATGAAGACATTGCTCACAAGCAAA
TTTCCCCAGCATCCATTGAGCTTTCTGCCCTGGAGATGGGGGGCCTGGCTCCAAGCCAAGCTTT
GGAGCCCACGAGGGAGTACCAGAACACCCAGCTCTCAGTCAGCACCTTTCTGCCTGAGCAGAGC
AGCCATGGCACCAGCCGGACACTGTCGTCAGGGCCCAGCAGCAACCTGCCACTGCCGCTGAGCA
GCTCAGCCACCATGCCCTCAATTCAGTGCAAACACAGGTCGCCCAATGGGGGACTGTTTCGACA
GAGTCCGGTGAAGACCCCCATCCCTATGTCTTTCCAGCCCGTGCCTGGAGGCGTCCTTCCAGAG
GCCCTGGACACCTCTCATGGCACCTCCATCTGACTGTGTCGCCTGCCCTCCTGCCCGCCACCCA
GCCCACCCGACCAGCAGAGCTTTTTAATACAAGAAAATGACAACACAGACCACACACACACACA
CACACACACACACACACACACACAGACTCTTTCATTTTTCTTGTACATACGTGTAAATAATGAC
AGAATGGAGTGGGGTAAAAGTGTATTTTGAATATTCCCAATTTTCGAAGTCAGTAAAAAAAAAC
AAAACAAAACAAAAACTGTATGAATGACTTTGTAAATTTTGTTCTATATGAATAAAAAGGCAAA
TTACTTGTGATCTATTTTATTTCTGTGAGTGGGGTAGGCAGGCCAGTACAGAGGGGATTGATCT
GCAGGTGCTGGTCCTGCAGGGTCCAAGTGGCTCCCCCTTCCTGGTTGCATGACCCTGTGCCAGG
ATGCCGGGACATCGGTTTGCAGGTCCG

hide sequence

RefSeq Acc Id:

XM_039094853 ⟹ XP_038950781

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	16	10,138,564 - 10,885,201 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_077354	(Get FASTA)	NCBI Sequence Viewer
	XP_038950781	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA17828	(Get FASTA)	NCBI Sequence Viewer
	CAA78936	(Get FASTA)	NCBI Sequence Viewer
	EDL88861	(Get FASTA)	NCBI Sequence Viewer
	EDL88862	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073010
GenBank Protein	Q62640	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_077354 ⟸ NM_024378
- Peptide Label:	precursor
- UniProtKB:	Q63225 (UniProtKB/Swiss-Prot), Q62640 (UniProtKB/Swiss-Prot), A6KFQ4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEALTLWLLPWICQCVTVRADSIIHIGAIFEENAAKDDRVFQLAVSDLSLNDDILQSEKITYSI KVIEANNPFQAVQEACDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNPGGSPRTAC HLNPSPDGEAYTLASRPPVRLNDVMLRLVTELRWQKFVMFYDSEYDIRGLQSFLDQASRLGLDV SLQKVDKNISHVFTSLFTTMKTEELNRYRDTLRRAILLLSPQGAHSFINEAVETNLASKDSHWV FVNEEISDPEILDLVHSALGRMTVVRQIFPSAKDNQKCMRNNHRISSLLCDPQEGYLQMLQISN LYLYDSVLMLANAFHRKLEDRKWHSMASLNCIRKSTKPWNGGRSMLDTIKKGHITGLTGVMEFR EDSSNPYVQFEILGTTYSETFGKDMRKLATWDSEKGLNGSLQERPMGSRLQGLTLKVVTVLEEP FVMVAENILGQPKRYKGFSIDVLDALAKALGFKYEIYQAPDGRYGHQLHNTSWNGMIGELISKR ADLAISAITITPERESVVDFSKRYMDYSVGILIKKPEEKISIFSLFAPFDFAVWACIAAAIPVV GVLIFVLNRIQAVRSQSATQPRPSASATLHSAIWIVYGAFVQQGGESSVNSVAMRIVMGSWWLF TLIVCSSYTANLAAFLTVSRMDSPVRTFQDLSKQLEMSYGTVRDSAVYEYFRAKGTNPLEQDST FAELWRTISKNGGADNCVSNPSEGIRKAKKGNYAFLWDVAVVEYAALTDDDCSVTVIGNSISSK GYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWPHTGRCDLTSHSSAQTDGKSLKLHSFA GVFCILAIGLLLACLVAALELWWNSNRCHQETPKEDKEVNLEQVHRRINSLMDEDIAHKQISPA SIELSALEMGGLAPSQALEPTREYQNTQLSVSTFLPEQSSHGTSRTLSSGPSSNLPLPLSSSAT MPSIQCKHRSPNGGLFRQSPVKTPIPMSFQPVPGGVLPEALDTSHGTSI hide sequence

RefSeq Acc Id:

ENSRNOP00000073010 ⟸ ENSRNOT00000079833

RefSeq Acc Id:	XP_038950781 ⟸ XM_039094853
- Peptide Label:	isoform X1
- UniProtKB:	A6KFQ4 (UniProtKB/TrEMBL)

Protein Domains

Ionotropic glutamate receptor C-terminal Ionotropic glutamate receptor L-glutamate and

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62640-F1-model_v2	AlphaFold	Q62640	1-1009	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:68366	AgrOrtholog
BioCyc Gene	G2FUF-12049	BioCyc
Ensembl Genes	ENSRNOG00000055499	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000079833	ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.70	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.40.50.2300	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Periplasmic binding protein-like II	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	ANF_lig-bd_rcpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glu/Gly-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Iono_rcpt_met	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ionotropic_Glu_rcpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Iontro_rcpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Peripla_BP_I	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:79219	UniProtKB/Swiss-Prot
NCBI Gene	79219	ENTREZGENE
PANTHER	GLUTAMATE RECEPTOR IONOTROPIC, DELTA-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	IONOTROPIC GLUTAMATE RECEPTOR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	ANF_receptor	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Lig_chan	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Lig_chan-Glu_bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Grid1	PhenoGen
PRINTS	NMDARECEPTOR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000055499	RatGTEx
SMART	Lig_chan-Glu_bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PBPe	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Periplasmic binding protein-like II	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF53822	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC217181
UniProt	A6KFQ4	ENTREZGENE, UniProtKB/TrEMBL
	A6KFQ5_RAT	UniProtKB/TrEMBL
	F1LUR6_RAT	UniProtKB/TrEMBL
	GRID1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q63225	ENTREZGENE
UniProt Secondary	Q63225	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Grid1	glutamate ionotropic receptor delta type subunit 1	LOC103690098	glutamate receptor ionotropic, delta-1-like	Data merged from RGD:9138374	737654	PROVISIONAL
2016-02-11	Grid1	glutamate ionotropic receptor delta type subunit 1	Grid1	glutamate receptor, ionotropic, delta 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-08-25	LOC103690098	glutamate receptor ionotropic, delta-1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2002-06-10	Grid1	glutamate receptor, ionotropic, delta 1			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	low expression in adult brain with a developmental peak in the caudate putamen at late embryonic/early postnatal stages	68255

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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