Elob-ps16 (elongin B, pseudogene 16) - Rat Genome Database

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Gene: Elob-ps16 (elongin B, pseudogene 16) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Elob-ps16
Name: elongin B, pseudogene 16
RGD ID: 6500564
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: elongin-B; LOC100909963; transcription elongation factor B polypeptide 2-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Elob  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8811,513,803 - 11,514,156 (-)NCBIGRCr8
mRatBN7.283,228,920 - 3,229,273 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.083,271,922 - 3,272,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.083,290,294 - 3,291,270 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera84,808,126 - 4,809,281 (-)NCBICelera
Cytogenetic Map8q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Elob-ps16
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)813402289Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_039082858   ⟹   XP_038938786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.283,228,852 - 3,229,293 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31808 BioCyc
NCBI Gene LOC100909963 ENTREZGENE
PhenoGen Elob-ps16 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Elob-ps16  elongin B, pseudogene 16  LOC100909963  transcription elongation factor B polypeptide 2-like  Symbol and Name Changed 1299863 APPROVED
2012-07-05 LOC100909963  transcription elongation factor B polypeptide 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL