LOC100911093 (CCA tRNA nucleotidyltransferase 1, mitochondrial-like) - Rat Genome Database

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Gene: LOC100911093 (CCA tRNA nucleotidyltransferase 1, mitochondrial-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100911093
Name: CCA tRNA nucleotidyltransferase 1, mitochondrial-like
RGD ID: 6494996
Description: Predicted to enable RNA binding activity; nucleotide binding activity; and nucleotidyltransferase activity. Predicted to be involved in tRNA 3'-terminal CCA addition.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07005533.1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81180,154,702 - 180,157,040 (-)NCBIGRCr8
mRatBN7.21170,720,730 - 170,722,745 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1170,721,272 - 170,722,576 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01185,171,373 - 185,173,658 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1185,171,547 - 185,172,851 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01192,143,145 - 192,145,139 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1168,540,686 - 168,542,962 (-)NCBICelera
Cytogenetic Map1q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC100911093
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1169537671214537671Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1155866514200866514Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1151646613196646613Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1158633083203633083Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1154561505199561505Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1126540680171540680Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1164747558181133855Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1123350408182418476Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1144267916172949660Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144267916174133260Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
2312558Glom17Glomerulus QTL 173.90.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1166532971191278129Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1164747424209747424Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1136830018181830018Rat
619614Bp78Blood pressure QTL 780.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1169112897197261052Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1169537671214537671Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393213533942Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1582204Livw1Liver weight QTL 13.60.0003liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)1155422851172949803Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1156677124201278233Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350408181759564Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
631548Bp88Blood pressure QTL 8850.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1156677124176484451Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1123350408182418476Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat

Markers in Region
RH132465  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21170,720,499 - 170,720,686 (-)MAPPERmRatBN7.2
mRatBN7.24139,703,366 - 139,703,552 (+)MAPPERmRatBN7.2
Rnor_6.04138,868,974 - 138,869,159NCBIRnor6.0
Rnor_5.04203,339,362 - 203,339,547UniSTSRnor5.0
RGSC_v3.44142,138,148 - 142,138,333UniSTSRGSC3.4
RGSC_v3.41174,575,261 - 174,575,446UniSTSRGSC3.4
Celera4128,415,713 - 128,415,898UniSTS
Celera1168,540,712 - 168,540,897UniSTS
RH 3.4 Map4873.02UniSTS
Cytogenetic Map4q41UniSTS
Cytogenetic Map1q35UniSTS
RH143319  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21170,720,508 - 170,720,785 (-)MAPPERmRatBN7.2
mRatBN7.24139,703,268 - 139,703,543 (+)MAPPERmRatBN7.2
Rnor_6.01185,173,338 - 185,173,614NCBIRnor6.0
Rnor_6.04138,868,876 - 138,869,150NCBIRnor6.0
Rnor_5.04203,339,264 - 203,339,538UniSTSRnor5.0
Rnor_5.01192,145,110 - 192,145,386UniSTSRnor5.0
RGSC_v3.41174,575,270 - 174,575,546UniSTSRGSC3.4
RGSC_v3.44142,138,050 - 142,138,324UniSTSRGSC3.4
Celera4128,415,615 - 128,415,889UniSTS
Celera1168,540,721 - 168,540,997UniSTS
Cytogenetic Map4q41UniSTS
Cytogenetic Map1q35UniSTS


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000027758   ⟹   ENSRNOP00000080338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1170,721,272 - 170,722,576 (-)Ensembl
RefSeq Acc Id: XM_039101158   ⟹   XP_038957086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,154,702 - 180,157,038 (-)NCBI
mRatBN7.21170,720,730 - 170,722,745 (-)NCBI
RefSeq Acc Id: XM_039101159   ⟹   XP_038957087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,154,702 - 180,157,040 (-)NCBI
mRatBN7.21170,720,730 - 170,722,743 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038957086 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957087 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000080338
  ENSRNOP00000080338.1
RefSeq Acc Id: XP_038957086   ⟸   XM_039101158
- UniProtKB: A0A8I5ZQ33 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038957087   ⟸   XM_039101159
- UniProtKB: A0A8I5ZQ33 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000080338   ⟸   ENSRNOT00000027758
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-57714 BioCyc
Ensembl Genes ENSRNOG00000020477 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027758.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.460.10 UniProtKB/TrEMBL
  cca-adding enzyme, domain 2 UniProtKB/TrEMBL
InterPro NT_sf UniProtKB/TrEMBL
  PolA_pol_head_dom UniProtKB/TrEMBL
  PolyA_RNA-bd UniProtKB/TrEMBL
NCBI Gene LOC100911093 ENTREZGENE
PANTHER CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL UniProtKB/TrEMBL
  CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam PolyA_pol UniProtKB/TrEMBL
  PolyA_pol_RNAbd UniProtKB/TrEMBL
PhenoGen LOC100911093 PhenoGen
RatGTEx ENSRNOG00000020477 RatGTEx
Superfamily-SCOP Poly A polymerase C-terminal region-like UniProtKB/TrEMBL
  SSF81301 UniProtKB/TrEMBL
UniProt A0A8I5ZQ33 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC100911093  CCA tRNA nucleotidyltransferase 1, mitochondrial-like  AABR07005533.1    Data merged from RGD:15003492 737654 PROVISIONAL
2019-11-08 AABR07005533.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2012-07-05 LOC100911093  CCA tRNA nucleotidyltransferase 1, mitochondrial-like      Symbol and Name status set to provisional 70820 PROVISIONAL