Gene: LOC100911221 (uncharacterized LOC100911221) Rattus norvegicus |
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 Analyze |
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Symbol: |
LOC100911221 |
Name: |
uncharacterized LOC100911221 |
RGD ID: |
6494360 |
Description: |
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Type: |
ncrna
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RefSeq Status: |
MODEL |
Previously known as: |
LOC100911245; uncharacterized LOC100911245 |
Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | Rnor_6.0 | 5 | 114,014,532 - 114,066,203 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 5 | 117,963,959 - 117,977,709 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 5 | 108,513,388 - 108,565,098 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | q33 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
QTLs in Region (mRatBN7.2)
70212 | Niddm25 | Non-insulin dependent diabetes mellitus QTL 25 | 3.54 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 1 | 131345958 | Rat | 1576314 | Eutr1 | Estrogen induced uterine response QTL 1 | | | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 2138965 | 166875058 | Rat | 634305 | Mamtr1 | Mammary tumor resistance QTL 1 | | 0.0001 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 12789751 | 113558310 | Rat | 2290448 | Scl54 | Serum cholesterol level QTL 54 | 2.93 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 31663789 | 131345958 | Rat | 2316959 | Gluco59 | Glucose level QTL 59 | 4.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 34944474 | 113558310 | Rat | 1641912 | Alcrsp18 | Alcohol response QTL 18 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 5 | 35189153 | 141643988 | Rat | 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 40128307 | 148607290 | Rat | 1331801 | Rf33 | Renal function QTL 33 | 4.149 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 5 | 43726656 | 129132602 | Rat | 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 5 | 46711509 | 161317411 | Rat | 1576312 | Emca8 | Estrogen-induced mammary cancer QTL 8 | 4.1 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 50328551 | 141643988 | Rat | 70189 | Mcs5 | Mammary carcinoma susceptibility QTL 5 | 10.51 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 55805606 | 132207589 | Rat | 1358895 | Bp254 | Blood pressure QTL 254 | 3.6 | 0.0003 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 5 | 58829236 | 128034027 | Rat | 61426 | Scl2 | Serum cholesterol level QTL 2 | 7.3 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 5 | 59793399 | 143070159 | Rat | 2316957 | Pur21 | Proteinuria QTL 21 | 6.2 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 5 | 59793528 | 113558156 | Rat | 61393 | Bp7 | Blood pressure QTL 7 | 4.5 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 60293434 | 161481680 | Rat | 2306971 | Anxrr21 | Anxiety related response QTL 21 | 9.47 | | fear/anxiety-related behavior trait (VT:1000241) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 5 | 66174080 | 124160948 | Rat | 1354598 | Srn6 | Serum renin concentration QTL 6 | 3.8 | | blood renin amount (VT:0003349) | plasma renin activity level (CMO:0000116) | 5 | 69540295 | 151018848 | Rat | 1298070 | Scl18 | Serum cholesterol level QTL 18 | 3.7 | | blood LDL cholesterol amount (VT:0000181) | calculated plasma low density lipoprotein cholesterol level (CMO:0001245) | 5 | 79584860 | 124584860 | Rat | 1598846 | Bp293 | Blood pressure QTL 293 | 3.9 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 79584860 | 124584860 | Rat | 1598859 | Cm66 | Cardiac mass QTL 66 | 2 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 5 | 79584860 | 124584860 | Rat | 1302790 | Scl20 | Serum cholesterol level QTL 20 | 6.4 | 0.0001 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 82394392 | 166664054 | Rat | 1298086 | Bp156 | Blood pressure QTL 156 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 5 | 84132602 | 129132602 | Rat | 7411601 | Foco12 | Food consumption QTL 12 | 19.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 5 | 87468046 | 132468046 | Rat | 7411564 | Bw135 | Body weight QTL 135 | | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 87468046 | 132468046 | Rat | 7411582 | Foco3 | Food consumption QTL 3 | 7.5 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 5 | 87468046 | 132468046 | Rat | 6903316 | Bw113 | Body weight QTL 113 | 2 | 0.0103 | body mass (VT:0001259) | body weight (CMO:0000012) | 5 | 87765973 | 132765973 | Rat | 1358889 | Bp261 | Blood pressure QTL 261 | 2.86 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 5 | 90067849 | 128034027 | Rat | 1358909 | Kidm25 | Kidney mass QTL 25 | 1.87 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 5 | 90067849 | 128034027 | Rat | 631527 | Tls1 | T-lymphoma susceptibility QTL 1 | 0 | 0.001 | thymus integrity trait (VT:0010555) | post-insult time to onset of T-cell lymphoma (CMO:0001907) | 5 | 90450144 | 135450144 | Rat | 61452 | Ciaa5 | CIA Autoantibody QTL 5 | 3.5 | | blood autoantibody amount (VT:0003725) | calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281) | 5 | 94858972 | 143070159 | Rat | 1331796 | Thshl2 | Thyroid stimulating hormone level QTL 2 | 2.3 | | blood thyroid-stimulating hormone amount (VT:0005119) | serum thyroid stimulating hormone level (CMO:0001248) | 5 | 97059760 | 147465714 | Rat | 2317753 | Glom24 | Glomerulus QTL 24 | 3.1 | | kidney glomerulus integrity trait (VT:0010546) | kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269) | 5 | 97570330 | 136479578 | Rat | 1582212 | Livw2 | Liver weight QTL 2 | 3.5 | 0.0004 | liver mass (VT:0003402) | liver weight to body weight ratio (CMO:0000633) | 5 | 99016066 | 119085810 | Rat | 1358187 | Emca1 | Estrogen-induced mammary cancer QTL 1 | 4.4 | | mammary gland integrity trait (VT:0010552) | post-insult time to mammary tumor formation (CMO:0000345) | 5 | 99216724 | 148607142 | Rat | 7394708 | Emca11 | Estrogen-induced mammary cancer QTL 11 | | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 99753548 | 113061097 | Rat | 1578673 | Bmd13 | Bone mineral density QTL 13 | 4.9 | | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 5 | 103689353 | 148689353 | Rat | 2317056 | Wbc3 | White blood cell count QTL 3 | 2.51 | 0.01 | leukocyte quantity (VT:0000217) | white blood cell count (CMO:0000027) | 5 | 105999803 | 150999803 | Rat | 7207488 | Bss110 | Bone structure and strength QTL 1 | 8.4 | | femur strength trait (VT:0010010) | femur stiffness (CMO:0001674) | 5 | 106906205 | 151906205 | Rat | 7207491 | Bss112 | Bone structure and strength QTL 112 | 7 | | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 5 | 106906205 | 151906205 | Rat | 7207481 | Bss106 | Bone structure and strength QTL 106 | 7.9 | | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 5 | 106906205 | 151906205 | Rat | 7207486 | Bss109 | Bone structure and strength QTL 109 | | | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 5 | 106906205 | 151906205 | Rat | 1549838 | Bss4 | Bone structure and strength QTL 4 | 9.2 | | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 5 | 106906205 | 151906205 | Rat | 1298089 | Scl14 | Serum cholesterol level QTL 14 | 5.8 | 0.0004 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 108845856 | 153845856 | Rat | 1598847 | Cm62 | Cardiac mass QTL 62 | 3.4 | | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 5 | 108845856 | 153845856 | Rat | 8657050 | Bw146 | Body weight QTL 146 | 19.84 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 5 | 108938288 | 153938288 | Rat | |
Markers in Region
D5Mgh23 |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
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mRatBN7.2 | 5 | 109,897,808 - 109,897,936 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 5 | 114,014,818 - 114,014,945 | NCBI | Rnor6.0 | Rnor_5.0 | 5 | 117,961,364 - 117,961,491 | UniSTS | Rnor5.0 | RGSC_v3.4 | 5 | 115,361,799 - 115,361,927 | RGD | RGSC3.4 | RGSC_v3.4 | 5 | 115,361,800 - 115,361,927 | UniSTS | RGSC3.4 | RGSC_v3.1 | 5 | 115,367,025 - 115,367,153 | RGD | | Celera | 5 | 108,513,674 - 108,513,801 | UniSTS | | RH 3.4 Map | 5 | 779.4 | UniSTS | | RH 3.4 Map | 5 | 779.4 | RGD | | RH 2.0 Map | 5 | 702.5 | RGD | | Cytogenetic Map | 5 | q34.1 | UniSTS | |
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D5Arb17 |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
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mRatBN7.2 | 5 | 109,897,663 - 109,897,907 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 5 | 114,014,673 - 114,014,916 | NCBI | Rnor6.0 | Rnor_5.0 | 5 | 117,961,219 - 117,961,462 | UniSTS | Rnor5.0 | RGSC_v3.4 | 5 | 115,361,654 - 115,361,898 | RGD | RGSC3.4 | RGSC_v3.4 | 5 | 115,361,655 - 115,361,898 | UniSTS | RGSC3.4 | RGSC_v3.1 | 5 | 115,366,880 - 115,367,124 | RGD | | Celera | 5 | 108,513,529 - 108,513,772 | UniSTS | | Cytogenetic Map | 5 | q34.1 | UniSTS | |
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PMC129043P1 |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
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mRatBN7.2 | 5 | 109,897,364 - 109,897,655 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 5 | 114,014,374 - 114,014,664 | NCBI | Rnor6.0 | Rnor_5.0 | 5 | 117,960,920 - 117,961,210 | UniSTS | Rnor5.0 | RGSC_v3.4 | 5 | 115,361,356 - 115,361,646 | UniSTS | RGSC3.4 | Celera | 5 | 108,513,230 - 108,513,520 | UniSTS | | Cytogenetic Map | 5 | q34.1 | UniSTS | |
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Jun |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
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mRatBN7.2 | 5 | 109,896,604 - 109,897,030 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 5 | 114,013,614 - 114,014,039 | NCBI | Rnor6.0 | Rnor_5.0 | 5 | 117,960,160 - 117,960,585 | UniSTS | Rnor5.0 | RGSC_v3.4 | 5 | 115,360,596 - 115,361,021 | UniSTS | RGSC3.4 | Celera | 5 | 108,512,470 - 108,512,895 | UniSTS | | Cytogenetic Map | 5 | q34.1 | UniSTS | |
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UniSTS:256946 |
Rat Assembly | Chr | Position (strand) | Source | JBrowse |
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mRatBN7.2 | 5 | 109,895,884 - 109,896,151 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 5 | 114,012,894 - 114,013,160 | NCBI | Rnor6.0 | Rnor_5.0 | 5 | 117,959,440 - 117,959,706 | UniSTS | Rnor5.0 | RGSC_v3.4 | 5 | 115,359,876 - 115,360,142 | UniSTS | RGSC3.4 | Celera | 5 | 108,511,750 - 108,512,016 | UniSTS | | Cytogenetic Map | 5 | q34.1 | UniSTS | |
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Expression
Sequence
RefSeq Acc Id: |
XR_005504861 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
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RefSeq Acc Id: |
XR_005504862 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 | 5 | 109,897,524 - 109,949,196 (+) | NCBI |
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RefSeq Acc Id: |
XR_005504863 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
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RefSeq Acc Id: |
XR_005504864 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504865 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 | 5 | 109,897,524 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504866 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
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RefSeq Acc Id: |
XR_005504867 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 | 5 | 109,897,524 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504868 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
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RefSeq Acc Id: |
XR_005504869 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504870 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504871 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,931,560 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504872 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
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RefSeq Acc Id: |
XR_005504873 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 | 5 | 109,898,542 - 109,949,196 (+) | NCBI |
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RefSeq Acc Id: |
XR_005504874 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504875 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504876 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504877 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,898,542 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504878 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,900,341 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504879 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504880 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504881 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504882 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504883 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504884 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504885 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504886 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,900,341 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504887 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504888 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504889 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504890 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504891 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504892 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005504893 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
mRatBN7.2 | 5 | 109,897,523 - 109,949,196 (+) | NCBI |
|
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2015-07-29 |
LOC100911221 |
uncharacterized LOC100911221 |
LOC100911245 |
uncharacterized LOC100911245 |
Data Merged |
737654 |
PROVISIONAL |
2012-07-05 |
LOC100911221 |
uncharacterized LOC100911221 |
|
|
Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
2012-07-05 |
LOC100911245 |
uncharacterized LOC100911245 |
|
|
Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
|
|