LOC100912261 (protein FAM64A-like)

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Gene: LOC100912261 (protein FAM64A-like) Rattus norvegicus

Analyze

No known orthologs.

Symbol:

LOC100912261

Name:

protein FAM64A-like

RGD ID:

6488061

Description:

Type:

protein-coding (Ensembl: pseudogene)

RefSeq Status:

MODEL

RGD Orthologs

Alliance Genes

More Info

homologs ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	17	81,864,207 - 81,868,932 (-)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	9	12,001,330 - 12,002,079 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	12,001,377 - 12,002,067 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	10,969,308 - 10,970,046 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC100912261
26 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	32
Count of miRNA genes:	32
Interacting mature miRNAs:	32
Transcripts:	ENSRNOT00000072423
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	37479847	82479847	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	38281509	83281509	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	38281509	83281509	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	0.00000071	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
7411575	Bw140	Body weight QTL 140	30.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
8694181	Bw151	Body weight QTL 151	4.36	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	49920154	86533673	Rat
2303580	Gluco49	Glucose level QTL 49	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	50040271	86533673	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	50909099	86022412	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	53498828	82479847	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	57246843	82046127	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	60781426	86533673	Rat
7411577	Bw141	Body weight QTL 141		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	62619516	86533673	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	71774621	82479847	Rat

Markers in Region

AI115087

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	9	12,000,977 - 12,001,083	NCBI	Rnor6.0
Rnor_5.0	9	10,968,944 - 10,969,050	UniSTS	Rnor5.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008766825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACYVU010000294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000072423

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	12,001,377 - 12,002,067 (-)	Ensembl

RefSeq Acc Id:

XM_008766825 ⟹ XP_008765047

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	17	81,864,207 - 81,868,932 (-)	NCBI
Rnor_6.0	9	12,001,330 - 12,002,079 (-)	NCBI

Sequence:

show sequence

TGGACCAAGCACATGGCGTCTCAGTGGCAGGGCATGAGGACCTCTGTGCGCAGACGATCACTCC
TAAAGGAGGAACAGCTAGAGAAGAAGGAGGTGACCCGGTCTGCTGGGGGTCATCCGGAGACCGG
TCCCTTGGGCTCCCTGTGCAGACAATTCCAAAGGAGGCTGCCCCTGAGAGCGGTCAGCCTGAAC
CTCGGTAACGGCCCCTCCTGGAAACGCCTGGAAAGTCCAGAGCCAGAGCAGCAAGGTCTTGCAG
CTCGCTCAGCCAAAAGCGCCTTGGGTGCCATGTCCCAGAGGATCCAGGAGTCCTGTCAGAGTGG
CACCAAGTGGCTGATGGAGACACAGGTGAAAGTGAGAAGGAAGCGAGGAGCCCAGAAAGACAGA
GGGTCACCACCACCCAGTCTGAGCCAGAAGAACACTCGGCTATGCAGGGCCAACCGGGATGCTA
GAGTCGGGGGACATCTTCGCCTCTCTGGCCAGATGGGTCCACATACCCATCGCCGTCAGAGGCT
AAGGAGAGAGGCTGCCCTCCGGAGCCCCTGTTCCTCCACAGAACCTCTCTGCTCTCCCAGTGAG
TCTGCAGTGAGTGACCTAGAGCCTGTGGGAGCCGGAATCCAGCATCTTCAGAAGCTGTCTCAAA
GGCTGGACAGAGCCATCAAGGCTGAAGAGAGTGGTGACATGACCGTCTCCCTTATCCGTGAATG
AGGACAGCAAGCATCCTACAGGAAGCCGGCTCTGTCCAACCACCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008765047	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_008765047 ⟸ XM_008766825

- UniProtKB:

A0A8I6AIJ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASQWQGMRTSVRRRSLLKEEQLEKKEVTRSAGGHPETGPLGSLCRQFQRRLPLRAVSLNLGNG
PSWKRLESPEPEQQGLAARSAKSALGAMSQRIQESCQSGTKWLMETQVKVRRKRGAQKDRGSPP
PSLSQKNTRLCRANRDARVGGHLRLSGQMGPHTHRRQRLRREAALRSPCSSTEPLCSPSESAVS
DLEPVGAGIQHLQKLSQRLDRAIKAEESGDMTVSLIRE

hide sequence

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-8535	BioCyc
Ensembl Genes	ENSRNOG00000016710	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000045990	Ensembl
Ensembl Protein	ENSRNOP00000092866	ENTREZGENE
	ENSRNOP00000092866.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022385	ENTREZGENE
	ENSRNOT00000022385.3	UniProtKB/TrEMBL
InterPro	RCS1	UniProtKB/TrEMBL
NCBI Gene	LOC100912261	ENTREZGENE
PANTHER	PROTEIN PIMREG	UniProtKB/TrEMBL
	PTHR35819	UniProtKB/TrEMBL
Pfam	RCS1	UniProtKB/TrEMBL
PhenoGen	LOC100912261	PhenoGen
UniProt	A0A8I6AIJ1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-07-05	LOC100912261	protein FAM64A-like			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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