Slc22a8 (solute carrier family 22 member 8) - Rat Genome Database

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Gene: Slc22a8 (solute carrier family 22 member 8) Rattus norvegicus
Analyze
Symbol: Slc22a8
Name: solute carrier family 22 member 8
RGD ID: 632286
Description: Enables organic anion transmembrane transporter activity; protein kinase C binding activity; and quaternary ammonium group transmembrane transporter activity. Involved in glutathione transport; quaternary ammonium group transport; and response to organic cyclic compound. Located in apical plasma membrane and basolateral plasma membrane. Orthologous to human SLC22A8 (solute carrier family 22 member 8); PARTICIPATES IN ibuprofen pharmacodynamics pathway; ibuprofen pharmacokinetics pathway; bile acid transport pathway; INTERACTS WITH (3,4-dihydroxyphenyl)acetic acid; 1-naphthyl isothiocyanate; 17beta-estradiol 17-glucosiduronic acid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC93369; Oat3; OCT3; organic anion transporter 3; organic anion/dicarboxylate exchanger; rOAT3; Roct; solute carrier family 22 (organic anion transporter), member 8; solute carrier family 22 ,member 8
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,925,506 - 214,945,516 (+)NCBIGRCr8
mRatBN7.21205,496,331 - 205,516,378 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1205,498,084 - 205,517,450 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1213,904,489 - 213,921,937 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01220,941,693 - 220,959,924 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01213,634,411 - 213,652,643 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,799,444 - 224,818,482 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,800,252 - 224,818,482 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,735,287 - 231,755,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,269,366 - 211,287,596 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,427,795 - 211,446,026 (+)NCBI
Celera1203,011,366 - 203,029,496 (+)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(3,4-dihydroxyphenyl)acetic acid  (EXP)
(R)-carnitine  (ISO)
1,1-dichloroethene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol 17-glucosiduronic acid  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9-hexadecafluorononanoic acid  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-Amino-9H-pyrido[2,3-b]indole  (ISO)
3',5'-cyclic AMP  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-dihydroxymandelic acid  (EXP)
3,7-dihydropurine-6-thione  (ISO)
3-Amino-1-methyl-5H-pyrido[4,3-b]indole  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-azaorotic acid  (EXP)
5-carboxyfluorescein  (ISO)
5-fluorouracil  (ISO)
5-formyltetrahydrofolic acid  (EXP,ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
5-methoxyindole-3-acetic acid  (EXP)
5-Methoxytryptophol  (EXP)
6-carboxyfluorescein  (ISO)
6-propyl-2-thiouracil  (EXP)
7,9-dihydro-1H-purine-2,6,8(3H)-trione  (EXP,ISO)
acetamide  (EXP)
acetamiprid  (ISO)
acetylsalicylic acid  (ISO)
adefovir  (EXP,ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
agomelatine  (EXP)
allopurinol  (ISO)
ammonium chloride  (EXP)
angelicin  (ISO)
aristolochic acid A  (ISO)
aristolochic acids  (EXP,ISO)
atrazine  (ISO)
aurantio-obtusin  (ISO)
Azoxymethane  (ISO)
bendroflumethiazide  (ISO)
benzo[a]pyrene  (ISO)
benzylpenicillin  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromosulfophthalein  (EXP)
bumetanide  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cefaclor  (ISO)
cefaloridine  (ISO)
cefazolin  (ISO)
cefdinir  (ISO)
cefoselis sulfate  (ISO)
cefotiam  (ISO)
ceftibuten  (ISO)
ceftizoxime  (ISO)
CGP 52608  (ISO)
cholate  (ISO)
chrysophanol  (ISO)
cidofovir anhydrous  (ISO)
cimetidine  (EXP,ISO)
cisplatin  (EXP)
clothianidin  (ISO)
corticosterone  (EXP)
Cuprizon  (EXP)
cyazofamid  (ISO)
D-gluconic acid  (EXP)
daidzein  (ISO)
dehydroepiandrosterone  (ISO)
dehydroepiandrosterone sulfate  (ISO)
deoxycholic acid  (EXP)
dexamethasone  (EXP)
dextran sulfate  (ISO)
diazinon  (ISO)
diclofenac  (ISO)
disodium cromoglycate  (EXP)
emodin  (ISO)
enalapril  (ISO)
enalaprilat dihydrate  (ISO)
endosulfan  (EXP)
estrone 3-sulfate  (EXP,ISO)
famotidine  (EXP,ISO)
folic acid  (EXP,ISO)
furan  (EXP)
furosemide  (EXP,ISO)
gentamycin  (EXP)
glutaric acid  (ISO)
glycitein  (ISO)
GW 4064  (ISO)
homovanillic acid  (EXP)
ibuprofen  (ISO)
icariin  (ISO)
imidacloprid  (ISO)
imperatorin  (ISO)
indocyanine green  (EXP)
indometacin  (ISO)
indoxyl sulfate  (ISO)
isoimperatorin  (ISO)
lansoprazole  (ISO)
lead(II) chloride  (ISO)
linezolid  (EXP)
linoleic acid  (ISO)
lipopolysaccharide  (EXP)
luteolin  (ISO)
mercaptopurine  (ISO)
Mercuric oxide  (EXP)
mercury atom  (EXP,ISO)
mercury dichloride  (EXP,ISO)
mercury(0)  (EXP,ISO)
methotrexate  (EXP,ISO)
methoxsalen  (ISO)
methylmercury chloride  (ISO)
miquelianin  (ISO)
MK 571  (ISO)
N-acetyl-L-cysteine  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (EXP,ISO)
nefazodone  (EXP)
nimesulide  (EXP)
Obtusifolin  (ISO)
ochratoxin A  (EXP,ISO)
omeprazole  (ISO)
oroxylin A  (ISO)
oxycodone  (EXP)
p-aminohippuric acid  (EXP,ISO)
pantoprazole  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
penconazole  (ISO)
perfluorodecanoic acid  (EXP)
perfluoroheptanoic acid  (EXP)
perfluorooctanoic acid  (EXP)
PhIP  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
piroxicam  (EXP)
potassium dichromate  (ISO)
prednisolone  (EXP)
probenecid  (EXP,ISO)
prostaglandin E2  (EXP,ISO)
prostaglandin F2alpha  (ISO)
psoralen  (ISO)
purine-6-thiol  (ISO)
purines  (EXP)
quercetin  (EXP,ISO)
quercetin 3-sulfate  (ISO)
ranitidine  (EXP,ISO)
resveratrol  (EXP,ISO)
Rhein  (ISO)
riddelliine  (EXP)
rotenone  (EXP)
sodium arsenate  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
Soman  (EXP)
succinic acid  (ISO)
sulforaphane  (EXP)
taurocholic acid  (ISO)
tauroursodeoxycholic acid  (EXP)
tebuconazole  (ISO)
tenofovir disoproxil fumarate  (ISO)
tenoxicam  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetracycline  (ISO)
thiacloprid  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (EXP,ISO)
tranilast  (EXP)
traumatic acid  (EXP,ISO)
trichloroethene  (EXP)
triphenyl phosphate  (EXP)
uniconazole  (ISO)
ursodeoxycholic acid  (EXP)
valdecoxib  (EXP)
valproic acid  (ISO)
valsartan  (EXP,ISO)
vancomycin  (EXP,ISO)
vanillylmandelic acid  (EXP)
vildagliptin  (EXP)
wedelolactone  (ISO)
wogonin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Activation of protein kinase Czeta increases OAT1 (SLC22A6)- and OAT3 (SLC22A8)-mediated transport. Barros SA, etal., J Biol Chem. 2009 Jan 30;284(5):2672-9. Epub 2008 Nov 21.
2. Molecular evidence of organic ion transporters in the rat adrenal cortex with adrenocorticotropin-regulated zonal expression. Beery E, etal., Endocrinology 2003 Oct;144(10):4519-26. Epub 2003 Jun 26.
3. Characterization of uremic toxin transport by organic anion transporters in the kidney. Deguchi T, etal., Kidney Int. 2004 Jan;65(1):162-74. doi: 10.1111/j.1523-1755.2004.00354.x.
4. Elimination of organic anions in response to an early stage of renal ischemia-reperfusion in the rat: role of basolateral plasma membrane transporters and cortical renal blood flow. Di Giusto G, etal., Pharmacology. 2008;81(2):127-36. Epub 2007 Oct 30.
5. Role of aromatic transmembrane residues of the organic anion transporter, rOAT3, in substrate recognition. Feng B, etal., Biochemistry 2002 Jul 16;41(28):8941-7.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. Differential gene expression of organic anion transporters in male and female rats. Kobayashi Y, etal., Biochem Biophys Res Commun 2002 Jan 11;290(1):482-7.
9. Molecular cloning and characterization of a new multispecific organic anion transporter from rat brain. Kusuhara H, etal., J Biol Chem 1999 May 7;274(19):13675-80.
10. Role of rat organic anion transporter 3 (Oat3) in the renal basolateral transport of glutathione. Lash LH, etal., Chem Biol Interact. 2007 Nov 20;170(2):124-34. Epub 2007 Jul 19.
11. Transport of organic cations across the blood-testis barrier. Maeda T, etal., Mol Pharm. 2007 Jul-Aug;4(4):600-7. Epub 2007 Jul 7.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Rat organic anion transporter 3 (rOAT3) is responsible for brain-to-blood efflux of homovanillic acid at the abluminal membrane of brain capillary endothelial cells. Mori S, etal., J Cereb Blood Flow Metab 2003 Apr;23(4):432-40.
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
16. GOA pipeline RGD automated data pipeline
17. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. Subcellular localization of transporters along the rat blood-brain barrier and blood-cerebral-spinal fluid barrier by in vivo biotinylation. Roberts LM, etal., Neuroscience. 2008 Aug 13;155(2):423-38. Epub 2008 Jun 13.
20. 1-Methyl-4-phenylpyridinium accumulates in cerebellar granule neurons via organic cation transporter 3. Shang T, etal., J Neurochem 2003 Apr;85(2):358-67.
21. Effect of methotrexate treatment on expression levels of multidrug resistance protein 2, breast cancer resistance protein and organic anion transporters Oat1, Oat2 and Oat3 in rats. Shibayama Y, etal., Cancer Sci. 2006 Nov;97(11):1260-6. Epub 2006 Aug 22.
22. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
23. Organic anion transporter 3 (Slc22a8) is a dicarboxylate exchanger indirectly coupled to the Na+ gradient. Sweet DH, etal., Am J Physiol Renal Physiol 2003 Apr;284(4):F763-9. Epub 2002 Dec 17.
24. Transport of xanthurenic acid by rat/human organic anion transporters OAT1 and OAT3. Uwai Y and Honjo E, Biosci Biotechnol Biochem. 2013;77(7):1517-21. doi: 10.1271/bbb.130178. Epub 2013 Jul 7.
Additional References at PubMed
PMID:11861777   PMID:11961115   PMID:12660303   PMID:12684544   PMID:15037815   PMID:15287899   PMID:15292460   PMID:15319347   PMID:15389674   PMID:15489334   PMID:15795901   PMID:15846470  
PMID:16316345   PMID:16844357   PMID:17244891   PMID:17245393   PMID:17585018   PMID:18480179   PMID:18946499   PMID:18953184   PMID:19056867   PMID:20924140   PMID:22759781   PMID:22808265  
PMID:22992436   PMID:22998451   PMID:23280877   PMID:23470271   PMID:24531880   PMID:25266751   PMID:25391897   PMID:26065488   PMID:26432838   PMID:26651153   PMID:28534121   PMID:29436232  
PMID:29980603   PMID:32101757   PMID:32271169   PMID:33790363  


Genomics

Comparative Map Data
Slc22a8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,925,506 - 214,945,516 (+)NCBIGRCr8
mRatBN7.21205,496,331 - 205,516,378 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1205,498,084 - 205,517,450 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1213,904,489 - 213,921,937 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01220,941,693 - 220,959,924 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01213,634,411 - 213,652,643 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,799,444 - 224,818,482 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,800,252 - 224,818,482 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,735,287 - 231,755,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,269,366 - 211,287,596 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,427,795 - 211,446,026 (+)NCBI
Celera1203,011,366 - 203,029,496 (+)NCBICelera
Cytogenetic Map1q43NCBI
SLC22A8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,992,824 - 63,015,841 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,989,154 - 63,015,841 (-)EnsemblGRCh38hg38GRCh38
GRCh371162,760,296 - 62,783,313 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,516,872 - 62,539,887 (-)NCBINCBI36Build 36hg18NCBI36
Build 341162,516,872 - 62,539,887NCBI
Celera1160,084,341 - 60,107,363 (-)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1159,089,368 - 59,112,301 (-)NCBIHuRef
CHM1_11162,643,053 - 62,666,076 (-)NCBICHM1_1
T2T-CHM13v2.01162,982,101 - 63,005,127 (-)NCBIT2T-CHM13v2.0
Slc22a8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,568,576 - 8,589,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,568,618 - 8,589,199 (+)EnsemblGRCm39 Ensembl
GRCm38198,591,254 - 8,611,835 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,591,254 - 8,611,835 (+)EnsemblGRCm38mm10GRCm38
MGSCv37198,665,744 - 8,686,325 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36198,658,334 - 8,678,879 (+)NCBIMGSCv36mm8
Celera198,349,417 - 8,369,998 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.44NCBI
Slc22a8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599283,929 - 300,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955599284,038 - 299,603 (+)NCBIChiLan1.0ChiLan1.0
SLC22A8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2964,214,698 - 64,237,854 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11165,259,865 - 65,282,950 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,345,026 - 58,368,089 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,696,354 - 61,719,413 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,696,354 - 61,719,413 (-)Ensemblpanpan1.1panPan2
SLC22A8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,709,592 - 53,728,595 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,709,591 - 53,728,578 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,315,443 - 52,334,482 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,754,911 - 54,773,992 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,754,940 - 54,773,983 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,856,934 - 53,875,969 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,431,286 - 53,450,303 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,218,623 - 54,237,679 (+)NCBIUU_Cfam_GSD_1.0
Slc22a8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,205,484 - 10,229,431 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581319,260 - 343,300 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936581319,372 - 343,171 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,782,060 - 8,800,997 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.128,782,030 - 8,800,998 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,124,926 - 8,143,912 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1110,885,895 - 10,909,739 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl110,886,690 - 10,910,546 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,240,303 - 108,262,690 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc22a8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249261,374,103 - 1,388,586 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249261,373,804 - 1,390,248 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc22a8
79 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:128
Interacting mature miRNAs:156
Transcripts:ENSRNOT00000024488
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1558658Bw59Body weight QTL 593.50.0003body mass (VT:0001259)body weight (CMO:0000012)1178784622223784622Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1171629477216629477Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1123556856242907031Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1169537671214537671Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1171629477216629477Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1185145134221264292Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1173108781218108781Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1171629477216629477Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1181133855226133855Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1171629477216629477Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1182623426219932796Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1171310381216310381Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1181759564214537555Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1176869060221869060Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1164747424209747424Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1185356336231689108Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1199368955224569684Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1169537671214537671Rat
1331790Bp201Blood pressure QTL 2013.127arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1198211513225126682Rat
10059587Bw173Body weight QTL 1733.230.025body mass (VT:0001259)body weight (CMO:0000012)1202069611247069611Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393213533942Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1191033875236033875Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1176550523221550523Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1188377360224054420Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
634338Hcar4Hepatocarcinoma resistance QTL 44.6liver integrity trait (VT:0010547)liver tumorous lesion number to liver area ratio (CMO:0001210)1193422268214537671Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1180359209218108781Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1203995416244113296Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1181829673224569684Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat

Markers in Region
BF386700  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21205,514,223 - 205,514,379 (+)MAPPERmRatBN7.2
Rnor_6.01224,816,329 - 224,816,484NCBIRnor6.0
Rnor_5.01231,753,108 - 231,753,263UniSTSRnor5.0
RGSC_v3.41211,285,443 - 211,285,598UniSTSRGSC3.4
Celera1203,027,343 - 203,027,498UniSTS
RH 3.4 Map11521.0UniSTS
Cytogenetic Map1q43UniSTS
RH135003  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81214,945,125 - 214,945,333 (+)Marker Load Pipeline
mRatBN7.21205,515,987 - 205,516,195 (+)MAPPERmRatBN7.2
Rnor_6.01224,818,093 - 224,818,300NCBIRnor6.0
Rnor_5.01231,754,872 - 231,755,079UniSTSRnor5.0
RGSC_v3.41211,287,207 - 211,287,414UniSTSRGSC3.4
Celera1203,029,107 - 203,029,314UniSTS
RH 3.4 Map11519.7UniSTS
Cytogenetic Map1q43UniSTS
RH138342  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21205,517,112 - 205,517,321 (+)MAPPERmRatBN7.2
Rnor_6.01224,819,218 - 224,819,426NCBIRnor6.0
Rnor_5.01231,755,997 - 231,756,205UniSTSRnor5.0
RGSC_v3.41211,288,332 - 211,288,540UniSTSRGSC3.4
Celera1203,030,232 - 203,030,440UniSTS
RH 3.4 Map11510.5UniSTS
Cytogenetic Map1q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 9 17 101 82 85 59 18 59 4 168 50 85 45 54 26

Sequence


Ensembl Acc Id: ENSRNOT00000024488   ⟹   ENSRNOP00000024488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1205,498,133 - 205,517,450 (+)Ensembl
Rnor_6.0 Ensembl1224,800,252 - 224,818,482 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100942   ⟹   ENSRNOP00000084369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1205,498,084 - 205,517,450 (+)Ensembl
RefSeq Acc Id: NM_031332   ⟹   NP_112622
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,927,284 - 214,945,515 (+)NCBI
mRatBN7.21205,498,145 - 205,516,377 (+)NCBI
Rnor_6.01224,800,252 - 224,818,482 (+)NCBI
Rnor_5.01231,735,287 - 231,755,261 (+)NCBI
RGSC_v3.41211,269,366 - 211,287,596 (+)RGD
Celera1203,011,366 - 203,029,496 (+)RGD
Sequence:
RefSeq Acc Id: XM_008760243   ⟹   XP_008758465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,927,151 - 214,945,516 (+)NCBI
mRatBN7.21205,497,831 - 205,516,378 (+)NCBI
Rnor_6.01224,799,444 - 224,818,479 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039092475   ⟹   XP_038948403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81214,925,506 - 214,945,516 (+)NCBI
mRatBN7.21205,496,333 - 205,516,378 (+)NCBI
RefSeq Acc Id: NP_112622   ⟸   NM_031332
- UniProtKB: Q66HN0 (UniProtKB/Swiss-Prot),   Q9R1U7 (UniProtKB/Swiss-Prot),   A0A0G2JSQ3 (UniProtKB/TrEMBL),   A6HZR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758465   ⟸   XM_008760243
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000024488   ⟸   ENSRNOT00000024488
RefSeq Acc Id: XP_038948403   ⟸   XM_039092475
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000084369   ⟸   ENSRNOT00000100942
Protein Domains
Major facilitator superfamily (MFS) profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R1U7-F1-model_v2 AlphaFold Q9R1U7 1-536 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690727
Promoter ID:EPDNEW_R1252
Type:single initiation site
Name:Slc22a8_1
Description:solute carrier family 22 member 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01224,800,241 - 224,800,301EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:632286 AgrOrtholog
BioCyc Gene G2FUF-56528 BioCyc
Ensembl Genes ENSRNOG00000018086 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024488.6 UniProtKB/TrEMBL
  ENSRNOT00000100942.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7109603 IMAGE-MGC_LOAD
InterPro MFS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Orgcat_transp/SVOP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:83500 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93369 IMAGE-MGC_LOAD
NCBI Gene 83500 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 22 MEMBER 8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB SLC22A8 RGD
PhenoGen Slc22a8 PhenoGen
PROSITE MFS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018086 RatGTEx
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JSQ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZX22_RAT UniProtKB/TrEMBL
  A6HZR4 ENTREZGENE, UniProtKB/TrEMBL
  Q66HN0 ENTREZGENE
  Q9R1U7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q66HN0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc22a8  solute carrier family 22 member 8  Slc22a8  solute carrier family 22 (organic anion transporter), member 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Slc22a8  solute carrier family 22 (organic anion transporter), member 8    solute carrier family 22 ,member 8  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized at the abluminal membrane of brain capillary endothelial cells 1299371
gene_expression expressed in kidney, brain, and male liver 70250
gene_function transports 1-Methyl-4-phenylpyridinium (MPP+), the toxic metabolite of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine 1299372
gene_process couples organic anion uptake indirectly to the Na(+) gradient 1299373
gene_regulation downregulated by serum testosterone and upregulated by hypophysectomy 70250