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Gene: Usp15 (ubiquitin specific peptidase 15) Rattus norvegicus

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Symbol:

Usp15

Name:

ubiquitin specific peptidase 15

RGD ID:

628795

Description:

Enables cysteine-type deubiquitinase activity. Involved in protein deubiquitination. Located in cytoplasm and nucleus. Orthologous to human USP15 (ubiquitin specific peptidase 15); PARTICIPATES IN mitochondrial autophagy pathway; INTERACTS WITH 2,6-dinitrotoluene; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

deubiquitinating enzyme 15; deubiquitinating enzyme Ubp109; ubiquitin carboxyl-terminal hydrolase 15; ubiquitin carboxyl-terminal hydrolase of 109 kDa; ubiquitin specific protease 15; ubiquitin thioesterase 15; ubiquitin-specific-processing protease 15; Ubp109

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP15 (ubiquitin specific peptidase 15)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Usp15 (ubiquitin specific peptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Usp15 (ubiquitin specific peptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP15 (ubiquitin specific peptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP15 (ubiquitin specific peptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp15 (ubiquitin specific peptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP15 (ubiquitin specific peptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP15 (ubiquitin specific peptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp15 (ubiquitin specific peptidase 15)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	USP15 (ubiquitin specific peptidase 15)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp15 (ubiquitin specific peptidase 15)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp15 (ubiquitin specific peptidase 15)	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	usp15 (ubiquitin specific peptidase 15)	Alliance	DIOPT (OrthoFinder\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	UBP12	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	H34C03.2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	H34C03.2	Alliance	DIOPT (Hieranoid\|InParanoid\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp15	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	60,643,611 - 60,805,137 (-)	NCBI		GRCr8
GRCr8 Ensembl	7	60,643,613 - 60,734,099 (-)	Ensembl		GRCr8 Ensembl
mRatBN7.2	7	58,756,714 - 58,848,778 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	58,756,872 - 58,848,721 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	60,630,453 - 60,720,966 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	62,833,103 - 62,923,616 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	62,610,431 - 62,700,867 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	66,595,707 - 66,687,707 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	66,595,742 - 66,687,278 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	66,793,539 - 66,885,533 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	62,871,167 - 62,961,405 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	55,929,201 - 56,019,813 (-)	NCBI		Celera
RGSC_v3.1	7	62,891,896 - 62,982,135 (-)	NCBI
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chronic myeloid leukemia (ISO)

diabetic neuropathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-nitropyrene (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,6-tribromophenol (ISO)

2,6-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetohydrazide (ISO)

acetylsalicylic acid (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-endorphin (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcium atom (ISO)

calcium(0) (ISO)

chlorpyrifos (ISO)

choline (ISO)

cobalt dichloride (EXP,ISO)

crocidolite asbestos (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flavonoids (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fumonisin B1 (ISO)

genistein (ISO)

gentamycin (EXP)

gold atom (ISO)

gold(0) (ISO)

hypochlorous acid (ISO)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

leflunomide (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

methimazole (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

morphine (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (EXP)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

streptozocin (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

Tributyltin oxide (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

BMP signaling pathway (IEA,ISO,ISS)

monoubiquitinated protein deubiquitination (IEA,ISO,ISS)

negative regulation of antifungal innate immune response (IEA,ISO,ISS)

negative regulation of transforming growth factor beta receptor signaling pathway (IEA,ISO,ISS)

positive regulation of canonical NF-kappaB signal transduction (ISO)

positive regulation of RIG-I signaling pathway (IEA,ISO)

protein deubiquitination (IDA,IEA,ISO)

protein K27-linked deubiquitination (IEA,ISO,ISS)

proteolysis (IEA)

regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator (IEA,ISO)

regulation of RNA metabolic process (IEA,ISO)

transcription elongation-coupled chromatin remodeling (IBA,IEA,ISO,ISS)

transforming growth factor beta receptor signaling pathway (IEA,ISO)

Cellular Component

cytoplasm (IDA,IEA,ISO)

cytosol (IEA,ISO)

mitochondrion (IEA)

nuclear body (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IDA,IEA,ISO)

Molecular Function

catalytic activity (IEA)

cysteine-type deubiquitinase activity (IDA,IEA,ISO)

cysteine-type endopeptidase activity (IEA,ISO,ISS)

cysteine-type peptidase activity (IEA)

deubiquitinase activity (IEA,ISO)

hydrolase activity (IEA)

identical protein binding (IEA,ISO)

K48-linked deubiquitinase activity (IEA,ISO)

peptidase activity (IEA)

protein binding (ISO)

SMAD binding (IEA,ISO)

transforming growth factor beta receptor binding (IEA,ISO)

ubiquitin-modified histone reader activity (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mitochondrial autophagy pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.	Durcan TM and Fon EA, Genes Dev. 2015 May 15;29(10):989-99. doi: 10.1101/gad.262758.115.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	De-regulated STAT5A/miR-202-5p/USP15/Caspase-6 regulatory axis suppresses CML cell apoptosis and contributes to Imatinib resistance.	Nie ZY, etal., J Exp Clin Cancer Res. 2020 Jan 17;39(1):17. doi: 10.1186/s13046-019-1502-7.
6.	Tissue-specificity, functional characterization and subcellular localization of a rat ubiquitin-specific processing protease, UBP109, whose mRNA expression is developmentally regulated.	Park KC, etal., Biochem J 2000 Jul 15;349(Pt 2):443-53.
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12532266	PMID:16005295	PMID:21947082	PMID:22001210	PMID:22344298	PMID:24399297	PMID:24526689	PMID:25002582	PMID:27368102	PMID:31933062	PMID:34088152	PMID:35478295
PMID:36635430

Genomics

Comparative Map Data

Usp15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	60,643,611 - 60,805,137 (-)	NCBI		GRCr8
GRCr8 Ensembl	7	60,643,613 - 60,734,099 (-)	Ensembl		GRCr8 Ensembl
mRatBN7.2	7	58,756,714 - 58,848,778 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	58,756,872 - 58,848,721 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	60,630,453 - 60,720,966 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	62,833,103 - 62,923,616 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	62,610,431 - 62,700,867 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	66,595,707 - 66,687,707 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	66,595,742 - 66,687,278 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	66,793,539 - 66,885,533 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	62,871,167 - 62,961,405 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	55,929,201 - 56,019,813 (-)	NCBI		Celera
RGSC_v3.1	7	62,891,896 - 62,982,135 (-)	NCBI
Cytogenetic Map	7	q22	NCBI

USP15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	62,260,404 - 62,416,389 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	62,260,338 - 62,417,431 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	62,654,185 - 62,810,169 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	60,940,454 - 61,086,165 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	60,940,453 - 61,086,165	NCBI
Celera	12	62,323,221 - 62,468,927 (+)	NCBI		Celera
Cytogenetic Map	12	q14.1	NCBI
HuRef	12	59,705,057 - 59,854,661 (+)	NCBI		HuRef
CHM1_1	12	62,622,031 - 62,771,333 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	62,239,218 - 62,395,185 (+)	NCBI		T2T-CHM13v2.0

Usp15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	122,940,911 - 123,032,924 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	122,940,911 - 123,032,900 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	123,105,006 - 123,197,281 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	123,105,006 - 123,196,995 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	122,550,300 - 122,633,979 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	122,516,304 - 122,599,983 (-)	NCBI		MGSCv36	mm8
Celera	10	125,493,807 - 125,579,763 (-)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI
cM Map	10	72.31	NCBI

Usp15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	9,403,097 - 9,533,653 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	9,440,645 - 9,533,653 (+)	NCBI	ChiLan1.0	ChiLan1.0

USP15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	31,944,328 - 32,090,448 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	31,937,511 - 32,086,939 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	26,533,441 - 26,682,964 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	26,808,337 - 26,954,099 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	26,808,337 - 26,954,099 (-)	Ensembl	panpan1.1		panPan2

USP15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	5,510,759 - 5,634,954 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	5,510,022 - 5,634,202 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	5,502,702 - 5,627,025 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	5,544,390 - 5,667,454 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	5,544,428 - 5,668,750 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	5,485,628 - 5,610,126 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	5,734,844 - 5,859,330 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	5,874,448 - 5,998,972 (+)	NCBI		UU_Cfam_GSD_1.0

Usp15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	53,015,395 - 53,131,801 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936545	978,280 - 1,095,659 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936545	978,318 - 1,094,729 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	26,964,553 - 27,097,444 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	26,964,380 - 27,082,549 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	29,580,789 - 29,800,904 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	58,154,905 - 58,300,431 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	58,154,919 - 58,300,522 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	187,509,595 - 187,654,699 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624802	5,560,574 - 5,682,300 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624802	5,559,107 - 5,682,338 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Usp15
1236 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	100
Count of miRNA genes:	86
Interacting mature miRNAs:	89
Transcripts:	ENSRNOT00000031191
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	23807606	68807606	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	49137999	67614020	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	51700643	96700643	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
1298525	Cm1	Cardiac mass QTL 1	2.7		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	7	56625161	101625161	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	39845902	84845902	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	32998702	77998702	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	49682832	63890004	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	36178764	81178764	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	55498584	105834451	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	36178764	81178764	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	28624575	65788017	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
61435	Cia4	Collagen induced arthritis QTL 4	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	59998661	63890004	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	20057232	65057232	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Markers in Region

RH131414

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	58,758,323 - 58,758,425 (-)	MAPPER	mRatBN7.2
Rnor_6.0	7	66,685,996 - 66,686,097	NCBI	Rnor6.0
Rnor_5.0	7	66,883,822 - 66,883,923	UniSTS	Rnor5.0
RH 3.4 Map	7	503.7	UniSTS
Cytogenetic Map	7	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	11	49	113	91	90	59	25	59	6	218	97	11	93	45	60	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001433837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_145184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_593438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF106657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031191 ⟹ ENSRNOP00000034485

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	60,643,613 - 60,734,099 (-)	Ensembl
mRatBN7.2 Ensembl	7	58,756,872 - 58,848,700 (-)	Ensembl
Rnor_6.0 Ensembl	7	66,595,742 - 66,686,198 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079410 ⟹ ENSRNOP00000071983

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	60,643,613 - 60,734,099 (-)	Ensembl
mRatBN7.2 Ensembl	7	58,757,067 - 58,848,721 (-)	Ensembl
Rnor_6.0 Ensembl	7	66,624,512 - 66,687,278 (+)	Ensembl

RefSeq Acc Id:

NM_145184 ⟹ NP_660185

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,643,613 - 60,734,099 (-)	NCBI
mRatBN7.2	7	58,758,223 - 58,848,721 (-)	NCBI
Rnor_6.0	7	66,595,742 - 66,686,198 (+)	NCBI
Rnor_5.0	7	66,793,539 - 66,885,533 (+)	NCBI
RGSC_v3.4	7	62,871,167 - 62,961,405 (-)	RGD
Celera	7	55,929,201 - 56,019,813 (-)	RGD

Sequence:

show sequence

GTCGCTGCCGCCTCCGCTACCGCTAGTGGAAGAAGATGGCGGAAGGCGGAGCGGCGGACCTGGA
CACCCAGCGTTCTGACATCGCGACGCTGCTCAAAACCTCGCTCCGGAAAGGGGACACCTGGTAT
CTAGTAGATAGTCGGTGGTTCAAACAGTGGAAAAAATATGTTGGCTTTGACAGTTGGGACAAAT
ACCAGATGGGAGATCAAAATGTCTATCCTGGACCCATCGATAACTCTGGACTTCTCAAAGATGG
CGATGCTCAGTCACTTAAGGAACACCTTATCGACGAGTTGGATTACATACTGTTGCCGACTGAG
GGCTGGAATAAACTTGTCAGCTGGTACACACTGATGGAAGGCCAAGAGCCAATAGCAAGAAAGG
TGGTAGAACAGGGCATGTTTGTAAAGCACTGCAAAGTGGAAGTCTACCTCACAGAACTGAAGCT
CTGCGAGAATGGGAACATGAACAATGTTGTAACTCGGAGATTTAGCAAAGCTGACACAATAGAC
ACAATTGAAAAGGAAATAAGAAAGATCTTCAATATTCCAGATGAAAAGGAGGCCAGACTGTGGA
ACAAGTATATGAGTAACACATTTGAGCCACTGAATAAGCCAGACAGCACCATCCAGGATGCCGG
CCTATACCAAGGACAGGTGTTAGTGATAGAACAAAAAAATGAAGACGGAACGTGGCCCAGGGGT
CCCTCTGCTCCTAATGTGAAAAACTCCAATTATTGTCTCCCGTCATATACTGCTTACAAGAACT
ATGATTATTCGGAACCTGGAAGAAACAATGAACAGCCAGGCCTGTGTGGCCTAAGTAACTTGGG
AAACACATGTTTCATGAACTCAGCCATTCAGTGTTTGAGCAACACACCTCCACTTACTGAATAT
TTCCTCAATGATAAGTACCAAGAAGAGCTGAATTTTGACAATCCCTTAGGAATGAGAGGTGAAA
TAGCTAAATCATATGCTGAACTCATCAAGCAGATGTGGTCTGGAAAGTTTAGCTATGTCACTCC
AAGAGCATTTAAGACACAAGTAGGACGTTTTGCACCTCAGTTCTCTGGATATCAACAGCAAGAC
TGCCAAGAACTACTAGCTTTCCTATTAGATGGATTACATGAGGATTTGAATAGAATTAGGAAAA
AACCATATATCCAGTTAAAAGATGCTGATGGGAGGCCAGACAAGGTGGTTGCTGAAGAAGCCTG
GGAAAACCATTTAAAAAGAAATGATTCTATCATAGTAGATATATTTCATGGCCTTTTCAAGTCT
ACGTTAGTGTGTCCTGAGTGTGCTAAGATCTCAGTGACCTTCGACCCTTTCTGTTACTTGACAC
TTCCATTGCCTATGAAAAAGGAACGTAGCTTAGAAGTTTATTTAGTTAGAATGGATCCACTTGC
TAAACCTATGCAATACAAAGTCATTGTGCCCAAAATTGGAAATATACTAGACCTTTGTACAGCA
CTGTCTGCTTTGTCGGGAGTACCTGCAGATAAGATGATAGTCACTGACATATATAATCATAGAT
TTCACAGGATATTTGCAATGGATGAGAACCTGAGTAGTATTATGGAGCGGGATGATATTTATGT
GTTTGAAATTAACATCAACAGGACAGAAGACACAGAACATGTGGTTATTCCTGTTTGCCTAAGA
GAAAAGTTCAGACACTCAAGTTACACTCACCACACTGGCTCTTCACTGTTCGGCCAGCCTTTTC
TTATGGCCGTGCCACGGAACAATACTGAAGATAAACTCTACAATCTCCTGCTCTTGAGAATGTG
CCGGTATGTCAAGATGTCTACTGAAACTGAGGAAACTGATGGACCCCTGCGTTGCTGTGAGGAC
CAGAATATTAATGGGAATGGTCCAAATGGCATACATGAAGAAGGCTCACCAAGTGAGATGGAGA
CAGATGAACCAGATGATGAGTCCAGCCAGGATCAAGAGCTTCCCTCAGAAAATGAGAACAGTCA
GTCTGAAGATTCAGTCGGAGGAGATAACGATTCTGAAAATGGATTGTGTACTGAAGAAACATGC
AAAGGTCGACTGACGGGACACAAAAAGCGATTGTTTACATTCCAGTTCAACAACTTAGGCAACA
CTGATATCAACTATATCAAAGACGACACCAGGCATATAAGATTTGATGATAGGCAGCTTCGGCT
AGATGAAAGATCTTTTCTCGCCTTGGACTGGGACCCTGACTTGAAGAAGAGATATTTTGATGAG
AATGCTGCAGAGGATTTTGAAAAACATGAAAGCGTGGAATATAAACCTCCAAAAAGACCCTTTG
TGAAGTTAAAAGACTGCATTGAACTTTTCACAACAAAAGAGAAGCTAGGTGCTGAAGACCCCTG
GTATTGTCCAAATTGTAAAGAGCATCAGCAAGCCACCAAGAAATTAGATCTGTGGTCCCTGCCT
CCCGTTCTTGTGGTGCATCTCAAGAGATTCTCCTATAGTCGCTACATGAGAGACAAGCTAGATA
CATTAGTCGATTTTCCCATCAGTGACTTGGATATGTCGGAATTCCTAATTAACCCAAATGCAGG
CCCTTGCCGCTATAATTTGATTGCTGTTTCCAATCACTATGGAGGGATGGGAGGAGGACATTAT
ACTGCTTTTGCAAAGAACAAAGATGATGGAAAGTGGTACTATTTTGATGACAGTAGCGTCTCCA
GTGCATCTGAAGACCAAATTGTGTCCAAAGCAGCATACGTGCTCTTCTACCAGAGACAGGACAC
TTTCAGTGGAACTGGCTTCTTCCCTCTCGACCGAGAAACTAAAGGTGCTTCAGCTGCCACAGGT
GTCCCCCTGGAAAGTGACGAAGACAGCAATGATAATGACAATGATCTAGAAAATGAAAACTGTA
TGCACACTAATTAATGAAAGTCCAAGAAGCCATACGAGAGAGAGAGAAAGAGAGAGAGAGACTT
TCCTGCCGGTGGTATCTGTGGAGACGGAGTTACCCACCGCATTAAACAGAGGTTTGAGAGGAGG
CGTTTCAGATACCCGAATGTAAATCCTTTATCAGATTTTAAATTCTGCAGTACTTGCCGTGAAA
CACAATGAAAACTTTAACAGAAATTGTTTTTTAAAACATTTACAGTTTTGTATTTACAAGCTAA
ATATATATAGGAAATCACAAATAAATCCCTTTTAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006241431 ⟹ XP_006241493

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,643,611 - 60,735,305 (-)	NCBI
mRatBN7.2	7	58,756,714 - 58,848,778 (-)	NCBI
Rnor_6.0	7	66,595,711 - 66,687,707 (+)	NCBI
Rnor_5.0	7	66,793,539 - 66,885,533 (+)	NCBI

Sequence:

show sequence

TTCCCACAATGCTCCGGGGCGTGCCGCCGCCGTCGCTGCCGCCTCCGCTACCGCTAGTGGAAGA
AGATGGCGGAAGGCGGAGCGGCGGACCTGGACACCCAGCGTTCTGACATCGCGACGCTGCTCAA
AACCTCGCTCCGGAAAGGGGACACCTGGTATCTAGTAGATAGTCGGTGGTTCAAACAGTGGAAA
AAATATGTTGGCTTTGACAGTTGGGACAAATACCAGATGGGAGATCAAAATGTCTATCCTGGAC
CCATCGATAACTCTGGACTTCTCAAAGATGGCGATGCTCAGTCACTTAAGGAACACCTTATCGA
CGAGTTGGATTACATACTGTTGCCGACTGAGGGCTGGAATAAACTTGTCAGCTGGTACACACTG
ATGGAAGGCCAAGAGCCAATAGCAAGAAAGGTGGTAGAACAGGGCATGTTTGTAAAGCACTGCA
AAGTGGAAGTCTACCTCACAGAACTGAAGCTCTGCGAGAATGGGAACATGAACAATGTTGTAAC
TCGGAGATTTAGCAAAGCTGACACAATAGACACAATTGAAAAGGAAATAAGAAAGATCTTCAAT
ATTCCAGATGAAAAGGAGGCCAGACTGTGGAACAAGTATATGAGTAACACATTTGAGCCACTGA
ATAAGCCAGACAGCACCATCCAGGATGCCGGCCTATACCAAGGACAGGTGTTAGTGATAGAACA
AAAAAATGAAGACGGAACGTGGCCCAGGGGTCCCTCTGCTCCTAAGTCCCCAGGTGCATCCAAT
TTTTCAACTTTACCAAAGATCTCTCCTTCATCTCTATCAAATAATTATAACAACATCAACAACA
GAAATGTGAAAAACTCCAATTATTGTCTCCCGTCATATACTGCTTACAAGAACTATGATTATTC
GGAACCTGGAAGAAACAATGAACAGCCAGGCCTGTGTGGCCTAAGTAACTTGGGAAACACATGT
TTCATGAACTCAGCCATTCAGTGTTTGAGCAACACACCTCCACTTACTGAATATTTCCTCAATG
ATAAGTACCAAGAAGAGCTGAATTTTGACAATCCCTTAGGAATGAGAGGTGAAATAGCTAAATC
ATATGCTGAACTCATCAAGCAGATGTGGTCTGGAAAGTTTAGCTATGTCACTCCAAGAGCATTT
AAGACACAAGTAGGACGTTTTGCACCTCAGTTCTCTGGATATCAACAGCAAGACTGCCAAGAAC
TACTAGCTTTCCTATTAGATGGATTACATGAGGATTTGAATAGAATTAGGAAAAAACCATATAT
CCAGTTAAAAGATGCTGATGGGAGGCCAGACAAGGTGGTTGCTGAAGAAGCCTGGGAAAACCAT
TTAAAAAGAAATGATTCTATCATAGTAGATATATTTCATGGCCTTTTCAAGTCTACGTTAGTGT
GTCCTGAGTGTGCTAAGATCTCAGTGACCTTCGACCCTTTCTGTTACTTGACACTTCCATTGCC
TATGAAAAAGGAACGTAGCTTAGAAGTTTATTTAGTTAGAATGGATCCACTTGCTAAACCTATG
CAATACAAAGTCATTGTGCCCAAAATTGGAAATATACTAGACCTTTGTACAGCACTGTCTGCTT
TGTCGGGAGTACCTGCAGATAAGATGATAGTCACTGACATATATAATCATAGATTTCACAGGAT
ATTTGCAATGGATGAGAACCTGAGTAGTATTATGGAGCGGGATGATATTTATGTGTTTGAAATT
AACATCAACAGGACAGAAGACACAGAACATGTGGTTATTCCTGTTTGCCTAAGAGAAAAGTTCA
GACACTCAAGTTACACTCACCACACTGGCTCTTCACTGTTCGGCCAGCCTTTTCTTATGGCCGT
GCCACGGAACAATACTGAAGATAAACTCTACAATCTCCTGCTCTTGAGAATGTGCCGGTATGTC
AAGATGTCTACTGAAACTGAGGAAACTGATGGACCCCTGCGTTGCTGTGAGGACCAGAATATTA
ATGGGAATGGTCCAAATGGCATACATGAAGAAGGCTCACCAAGTGAGATGGAGACAGATGAACC
AGATGATGAGTCCAGCCAGGATCAAGAGCTTCCCTCAGAAAATGAGAACAGTCAGTCTGAAGAT
TCAGTCGGAGGAGATAACGATTCTGAAAATGGATTGTGTACTGAAGAAACATGCAAAGGTCAAC
TGACGGGACACAAAAAGCGATTGTTTACATTCCAGTTCAACAACTTAGGCAACACTGATATCAA
CTATATCAAAGACGACACCAGGCATATAAGATTTGATGATAGGCAGCTTCGGCTAGATGAAAGA
TCTTTTCTCGCCTTGGACTGGGACCCTGACTTGAAGAAGAGATATTTTGATGAGAATGCTGCAG
AGGATTTTGAAAAACATGAAAGCGTGGAATATAAACCTCCAAAAAGACCCTTTGTGAAGTTAAA
AGACTGCATTGAACTTTTCACAACAAAAGAGAAGCTAGGTGCTGAAGACCCCTGGTATTGTCCA
AATTGTAAAGAGCATCAGCAAGCCACCAAGAAATTAGATCTGTGGTCCCTGCCTCCCGTTCTTG
TGGTGCATCTCAAGAGATTCTCCTATAGTCGCTACATGAGAGACAAGCTAGATACATTAGTCGA
TTTTCCCATCAGTGACTTGGATATGTCGGAATTCCTAATTAACCCAAATGCAGGCCCTTGCCGC
TATAATTTGATTGCTGTTTCCAATCACTATGGAGGGATGGGAGGAGGACATTATACTGCTTTTG
CAAAGAACAAAGATGATGGAAAGTGGTACTATTTTGATGACAGTAGCGTCTCCACTGCATCTGA
AGACCAAATTGTGTCCAAAGCAGCATACGTGCTCTTCTACCAGAGACAGGACACTTTCAGTGGA
ACTGGCTTCTTCCCTCTCGACCGAGAAACTAAAGGTGCTTCAGCTGCCACAGGTGTCCCCCTGG
AAAGTGACGAAGACAGCAATGATAATGACAATGATCTAGAAAATGAAAACTGTATGCACACTAA
TTAATGAAAGTCCAAGAAGCCATACGAGAGAGAGAGAAAGAGAGAGAGAGACTTTCCTGCCGGT
GGTATCTGTGGAGACGGAGTTACCCACCGCATTAAACAGAGGTCTGAGAGGAGGCGTTTCAGAT
ACCCGAATGTAAATCCTTTATCAGATTTTAACTTGTGCAGTACTTGAAGTGAAACACAATGAAA
ACTTTAACAGAAATTGTCTCTTAATACATTTACAGTCTTGTATTTACAAGCTAAATATATATAG
GAAATCACAAATAAATCCCTTTTAAGTTTGCTGCTGTTTTGATCAATTATGTTTTCTTTAATTT
TTGGATGTGACTTAATTGATGACAAATGTTAACTTTGTGGATGTTGGTCATTAATTTTGCTCTA
ATAATACTGCAAGGAAACTCTGGCTGAACTTGGTTCTTGGGTAATCTAGTCCTGTGCGCTAGGC
TGGCTGTCTGCACCTCTCGGGTACTTAGCTGCTGTCAGTGTGGCCCAGACACTGCAGTGCCCTT
GGTACACCAGATCTCCCAGTCTGTCTGTCCCTGGTAATCAGTGTGGGTCTGTTACCACAACCCG
AGGAGCAGCCTTGAGGAAGTTCCCTTTTGTTGTATCATTAAAGTGCAGAACATTACGTTTATCT
CGCTCACTGTGGGAACACGTTCTAGATTTCACATGCCATCAAAATCATTTTCAGCTACATGTAA
GTATCTTTCACTGCAATTGGAATCTATAAATTTTTCAATTTTGTTTTGGTTTAAAATGCTTATC
TTCAATTCACTGTTGGTTAAAATGAAAGGTTTCATGTTTTGCTGTCTATTATTCTCCACTCCAT
TTTGGTAATTTGGCAACTTTTTAGCTCTCCCAGTTACTATAGCTTTAAGGCAGGCTGGTTAGTA
CTCTGTATCTGTACTAAGAATTGCATCAAAGTTAGGCGAGGTTTTCTGTTCATGTACTAGCCTT
TAACTCATTGCTAATTTGGCTCTAGAGGTAGGTCTGTTAACTTTCTCTGTGTATTCCTGATGGA
ATTCACCATAGCCTTACAGCTTCTCTCAGAAGGTAACTTGTATAAGAGAAATAGCATTTGCATG
TTCGTTCCACAGTCAGAACCTGTGCAGCACATGACGCATACAAACCTTGGGTTTCATTTAGCTT
CTCACAGTCAAGGATCCAAGACGCCAAATATATATGTGAGCATTTGATACATTTTCATTTGCTG
CTTTTCTCTCCCTCTGATCCAGTTGAAAGAATGTATGGATGATTGGCAGGCAATACTGCCTTTA
ATAGGAAACTAAATGCTGGGGCACATTTCACATCCGACTACCTGAGAAATCGCTTTGTGTCCCA
CTGTTATTAAAGCAAAAATTATAATGTTCTTCACTTGAACTAATCAAATACAATAGATTATAAA
TTGTGTATTGTAAATAAAAGTTCACTCTGTGAGTGCACATTTTGGTAAATTATTTATTTATGTT
AGCATTTTAAAAGAAAGGGAAAAAAGTGCATTTGACCAGGATAAGTAAGGTATGTTGATCATGG
CTTTGCTTTATATCTTGATATTAAAGCTGGTTTTTCATCCTGGTCTTTTAAAAGCTGCTTCGGG
TGTTGTTTCTTTTTTCTTTTCTTTTCTCTTTTTTTCTTCTTTTTATCTCTCTCTCTTTTTTTTT
TTTAAATGTAAACACAACCTCCTGCATGACAGAGGTTAATATTTTGTCTGCACTTGGGTTCACT
TGAGTTTACATTTGAAATGTGCATGTTTATTTATACAGATTTCAATAAAGCTATTGACAGCCTT
A

hide sequence

RefSeq Acc Id:

XM_008765376 ⟹ XP_008763598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,643,611 - 60,709,300 (-)	NCBI
mRatBN7.2	7	58,756,714 - 58,823,442 (-)	NCBI
Rnor_6.0	7	66,620,530 - 66,687,707 (+)	NCBI

Sequence:

show sequence

TACTCTGCCTCCCAAATACTGAACATTAAGATCTCCAGTGGAGGGGGGCTTGCTTCAGCTACTT
GATGAAATTCTTTCCATTGCTACAAAGGAAAAGAAAAAGGAATAGGTAAAGTCATTGTGGAGAG
TGTTTACAACTGAATACAAATTAATTACAGTAGTGTAGTATCTTAGGATTTTACTTGACTATTA
AATCCCAGTCCCAAACTTGTTGGTAACAGTATTTGATTTCTAGTTTTTTAATTATTAATTAGCT
ACAAGAAAGTTATAAAAATTCAGTATATTGTTACATTCTTTAAACTCTGCATCATTCTGTGTAA
GAAATTTAAAGCATCTTAGTTGAGTCAAAATTTAAGTTTTACACTGTGAATTAAGCCTATTAAA
ATTAGAGACATGTAGTCTGTGAGACTATTTTATAGATTTGTAACAAACATAATTAAGAGAACAT
ATCCAAGGAATTAATGCTGGATTTTACAGCAAACTTCAGATAGTCATTTAAAACCGTGAGTTGA
GACAGGTTTCCTGGCCATGAAAGGGAAGTTTGCCATTCTTGTATTGAGTTTGATGCGGCTGCTA
GTCTGTGTCAGTCATTGGAGCCTCCCTTTGCCATGTCTGTCTAAGTGTCATGTATCAGGCCAGT
TACTATCTTCAGAAACAGTGTTCATGACTGAAATCCTACAGTTAACCTTTAGAAGAGCAAAAGG
AAATACACTTACTTGAAAGGTGGTAGAACAGGGCATGTTTGTAAAGCACTGCAAAGTGGAAGTC
TACCTCACAGAACTGAAGCTCTGCGAGAATGGGAACATGAACAATGTTGTAACTCGGAGATTTA
GCAAAGCTGACACAATAGACACAATTGAAAAGGAAATAAGAAAGATCTTCAATATTCCAGATGA
AAAGGAGGCCAGACTGTGGAACAAGTATATGAGTAACACATTTGAGCCACTGAATAAGCCAGAC
AGCACCATCCAGGATGCCGGCCTATACCAAGGACAGGTGTTAGTGATAGAACAAAAAAATGAAG
ACGGAACGTGGCCCAGGGGTCCCTCTGCTCCTAAGTCCCCAGGTGCATCCAATTTTTCAACTTT
ACCAAAGATCTCTCCTTCATCTCTATCAAATAATTATAACAACATCAACAACAGAAATGTGAAA
AACTCCAATTATTGTCTCCCGTCATATACTGCTTACAAGAACTATGATTATTCGGAACCTGGAA
GAAACAATGAACAGCCAGGCCTGTGTGGCCTAAGTAACTTGGGAAACACATGTTTCATGAACTC
AGCCATTCAGTGTTTGAGCAACACACCTCCACTTACTGAATATTTCCTCAATGATAAGTACCAA
GAAGAGCTGAATTTTGACAATCCCTTAGGAATGAGAGGTGAAATAGCTAAATCATATGCTGAAC
TCATCAAGCAGATGTGGTCTGGAAAGTTTAGCTATGTCACTCCAAGAGCATTTAAGACACAAGT
AGGACGTTTTGCACCTCAGTTCTCTGGATATCAACAGCAAGACTGCCAAGAACTACTAGCTTTC
CTATTAGATGGATTACATGAGGATTTGAATAGAATTAGGAAAAAACCATATATCCAGTTAAAAG
ATGCTGATGGGAGGCCAGACAAGGTGGTTGCTGAAGAAGCCTGGGAAAACCATTTAAAAAGAAA
TGATTCTATCATAGTAGATATATTTCATGGCCTTTTCAAGTCTACGTTAGTGTGTCCTGAGTGT
GCTAAGATCTCAGTGACCTTCGACCCTTTCTGTTACTTGACACTTCCATTGCCTATGAAAAAGG
AACGTAGCTTAGAAGTTTATTTAGTTAGAATGGATCCACTTGCTAAACCTATGCAATACAAAGT
CATTGTGCCCAAAATTGGAAATATACTAGACCTTTGTACAGCACTGTCTGCTTTGTCGGGAGTA
CCTGCAGATAAGATGATAGTCACTGACATATATAATCATAGATTTCACAGGATATTTGCAATGG
ATGAGAACCTGAGTAGTATTATGGAGCGGGATGATATTTATGTGTTTGAAATTAACATCAACAG
GACAGAAGACACAGAACATGTGGTTATTCCTGTTTGCCTAAGAGAAAAGTTCAGACACTCAAGT
TACACTCACCACACTGGCTCTTCACTGTTCGGCCAGCCTTTTCTTATGGCCGTGCCACGGAACA
ATACTGAAGATAAACTCTACAATCTCCTGCTCTTGAGAATGTGCCGGTATGTCAAGATGTCTAC
TGAAACTGAGGAAACTGATGGACCCCTGCGTTGCTGTGAGGACCAGAATATTAATGGGAATGGT
CCAAATGGCATACATGAAGAAGGCTCACCAAGTGAGATGGAGACAGATGAACCAGATGATGAGT
CCAGCCAGGATCAAGAGCTTCCCTCAGAAAATGAGAACAGTCAGTCTGAAGATTCAGTCGGAGG
AGATAACGATTCTGAAAATGGATTGTGTACTGAAGAAACATGCAAAGGTCAACTGACGGGACAC
AAAAAGCGATTGTTTACATTCCAGTTCAACAACTTAGGCAACACTGATATCAACTATATCAAAG
ACGACACCAGGCATATAAGATTTGATGATAGGCAGCTTCGGCTAGATGAAAGATCTTTTCTCGC
CTTGGACTGGGACCCTGACTTGAAGAAGAGATATTTTGATGAGAATGCTGCAGAGGATTTTGAA
AAACATGAAAGCGTGGAATATAAACCTCCAAAAAGACCCTTTGTGAAGTTAAAAGACTGCATTG
AACTTTTCACAACAAAAGAGAAGCTAGGTGCTGAAGACCCCTGGTATTGTCCAAATTGTAAAGA
GCATCAGCAAGCCACCAAGAAATTAGATCTGTGGTCCCTGCCTCCCGTTCTTGTGGTGCATCTC
AAGAGATTCTCCTATAGTCGCTACATGAGAGACAAGCTAGATACATTAGTCGATTTTCCCATCA
GTGACTTGGATATGTCGGAATTCCTAATTAACCCAAATGCAGGCCCTTGCCGCTATAATTTGAT
TGCTGTTTCCAATCACTATGGAGGGATGGGAGGAGGACATTATACTGCTTTTGCAAAGAACAAA
GATGATGGAAAGTGGTACTATTTTGATGACAGTAGCGTCTCCACTGCATCTGAAGACCAAATTG
TGTCCAAAGCAGCATACGTGCTCTTCTACCAGAGACAGGACACTTTCAGTGGAACTGGCTTCTT
CCCTCTCGACCGAGAAACTAAAGGTGCTTCAGCTGCCACAGGTGTCCCCCTGGAAAGTGACGAA
GACAGCAATGATAATGACAATGATCTAGAAAATGAAAACTGTATGCACACTAATTAATGAAAGT
CCAAGAAGCCATACGAGAGAGAGAGAAAGAGAGAGAGAGACTTTCCTGCCGGTGGTATCTGTGG
AGACGGAGTTACCCACCGCATTAAACAGAGGTCTGAGAGGAGGCGTTTCAGATACCCGAATGTA
AATCCTTTATCAGATTTTAACTTGTGCAGTACTTGAAGTGAAACACAATGAAAACTTTAACAGA
AATTGTCTCTTAATACATTTACAGTCTTGTATTTACAAGCTAAATATATATAGGAAATCACAAA
TAAATCCCTTTTAAGTTTGCTGCTGTTTTGATCAATTATGTTTTCTTTAATTTTTGGATGTGAC
TTAATTGATGACAAATGTTAACTTTGTGGATGTTGGTCATTAATTTTGCTCTAATAATACTGCA
AGGAAACTCTGGCTGAACTTGGTTCTTGGGTAATCTAGTCCTGTGCGCTAGGCTGGCTGTCTGC
ACCTCTCGGGTACTTAGCTGCTGTCAGTGTGGCCCAGACACTGCAGTGCCCTTGGTACACCAGA
TCTCCCAGTCTGTCTGTCCCTGGTAATCAGTGTGGGTCTGTTACCACAACCCGAGGAGCAGCCT
TGAGGAAGTTCCCTTTTGTTGTATCATTAAAGTGCAGAACATTACGTTTATCTCGCTCACTGTG
GGAACACGTTCTAGATTTCACATGCCATCAAAATCATTTTCAGCTACATGTAAGTATCTTTCAC
TGCAATTGGAATCTATAAATTTTTCAATTTTGTTTTGGTTTAAAATGCTTATCTTCAATTCACT
GTTGGTTAAAATGAAAGGTTTCATGTTTTGCTGTCTATTATTCTCCACTCCATTTTGGTAATTT
GGCAACTTTTTAGCTCTCCCAGTTACTATAGCTTTAAGGCAGGCTGGTTAGTACTCTGTATCTG
TACTAAGAATTGCATCAAAGTTAGGCGAGGTTTTCTGTTCATGTACTAGCCTTTAACTCATTGC
TAATTTGGCTCTAGAGGTAGGTCTGTTAACTTTCTCTGTGTATTCCTGATGGAATTCACCATAG
CCTTACAGCTTCTCTCAGAAGGTAACTTGTATAAGAGAAATAGCATTTGCATGTTCGTTCCACA
GTCAGAACCTGTGCAGCACATGACGCATACAAACCTTGGGTTTCATTTAGCTTCTCACAGTCAA
GGATCCAAGACGCCAAATATATATGTGAGCATTTGATACATTTTCATTTGCTGCTTTTCTCTCC
CTCTGATCCAGTTGAAAGAATGTATGGATGATTGGCAGGCAATACTGCCTTTAATAGGAAACTA
AATGCTGGGGCACATTTCACATCCGACTACCTGAGAAATCGCTTTGTGTCCCACTGTTATTAAA
GCAAAAATTATAATGTTCTTCACTTGAACTAATCAAATACAATAGATTATAAATTGTGTATTGT
AAATAAAAGTTCACTCTGTGAGTGCACATTTTGGTAAATTATTTATTTATGTTAGCATTTTAAA
AGAAAGGGAAAAAAGTGCATTTGACCAGGATAAGTAAGGTATGTTGATCATGGCTTTGCTTTAT
ATCTTGATATTAAAGCTGGTTTTTCATCCTGGTCTTTTAAAAGCTGCTTCGGGTGTTGTTTCTT
TTTTCTTTTCTTTTCTCTTTTTTTCTTCTTTTTATCTCTCTCTCTTTTTTTTTTTTAAATGTAA
ACACAACCTCCTGCATGACAGAGGTTAATATTTTGTCTGCACTTGGGTTCACTTGAGTTTACAT
TTGAAATGTGCATGTTTATTTATACAGATTTCAATAAAGCTATTGACAGCCTTA

hide sequence

RefSeq Acc Id:

XM_039078350 ⟹ XP_038934278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,643,611 - 60,684,187 (-)	NCBI
mRatBN7.2	7	58,756,714 - 58,798,800 (-)	NCBI

RefSeq Acc Id:

XM_039078351 ⟹ XP_038934279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,643,611 - 60,708,034 (-)	NCBI
mRatBN7.2	7	58,756,714 - 58,822,656 (-)	NCBI

RefSeq Acc Id:

XM_039078353 ⟹ XP_038934281

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,643,611 - 60,670,346 (-)	NCBI
mRatBN7.2	7	58,756,714 - 58,784,959 (-)	NCBI

RefSeq Acc Id:

XM_063262953 ⟹ XP_063119023

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,643,611 - 60,805,137 (-)	NCBI

RefSeq Acc Id:

XM_063262954 ⟹ XP_063119024

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,653,027 - 60,734,172 (-)	NCBI

RefSeq Acc Id:

XM_063262955 ⟹ XP_063119025

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,653,029 - 60,734,167 (-)	NCBI

RefSeq Acc Id:

XM_063262956 ⟹ XP_063119026

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,643,611 - 60,708,034 (-)	NCBI

RefSeq Acc Id:

XM_063262957 ⟹ XP_063119027

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,689,660 - 60,735,305 (-)	NCBI

RefSeq Acc Id:

XM_063262958 ⟹ XP_063119028

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,689,660 - 60,735,305 (-)	NCBI

RefSeq Acc Id:

XR_010052935

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,662,405 - 60,735,956 (-)	NCBI

RefSeq Acc Id:

XR_010052936

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,662,405 - 60,735,305 (-)	NCBI

RefSeq Acc Id:

XR_010052937

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,662,405 - 60,735,305 (-)	NCBI

RefSeq Acc Id:

XR_010052938

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,662,405 - 60,735,305 (-)	NCBI

RefSeq Acc Id:

XR_010052939

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,674,796 - 60,735,305 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001420766	(Get FASTA)	NCBI Sequence Viewer
	NP_001420767	(Get FASTA)	NCBI Sequence Viewer
	NP_001420768	(Get FASTA)	NCBI Sequence Viewer
	NP_001420769	(Get FASTA)	NCBI Sequence Viewer
	NP_001420770	(Get FASTA)	NCBI Sequence Viewer
	NP_001420771	(Get FASTA)	NCBI Sequence Viewer
	NP_001420772	(Get FASTA)	NCBI Sequence Viewer
	NP_001420773	(Get FASTA)	NCBI Sequence Viewer
	NP_001420774	(Get FASTA)	NCBI Sequence Viewer
	NP_001420775	(Get FASTA)	NCBI Sequence Viewer
	NP_001420776	(Get FASTA)	NCBI Sequence Viewer
	NP_001420777	(Get FASTA)	NCBI Sequence Viewer
	NP_001420778	(Get FASTA)	NCBI Sequence Viewer
	NP_001420779	(Get FASTA)	NCBI Sequence Viewer
	NP_660185	(Get FASTA)	NCBI Sequence Viewer
	XP_006241493	(Get FASTA)	NCBI Sequence Viewer
	XP_008763598	(Get FASTA)	NCBI Sequence Viewer
	XP_038934278	(Get FASTA)	NCBI Sequence Viewer
	XP_038934279	(Get FASTA)	NCBI Sequence Viewer
	XP_038934281	(Get FASTA)	NCBI Sequence Viewer
	XP_063119023	(Get FASTA)	NCBI Sequence Viewer
	XP_063119024	(Get FASTA)	NCBI Sequence Viewer
	XP_063119025	(Get FASTA)	NCBI Sequence Viewer
	XP_063119026	(Get FASTA)	NCBI Sequence Viewer
	XP_063119027	(Get FASTA)	NCBI Sequence Viewer
	XP_063119028	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF14188	(Get FASTA)	NCBI Sequence Viewer
	EDM16532	(Get FASTA)	NCBI Sequence Viewer
	EDM16533	(Get FASTA)	NCBI Sequence Viewer
	EDM16534	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000034485
	ENSRNOP00000071983
GenBank Protein	Q9R085	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_660185 ⟸ NM_145184

- UniProtKB:

Q9R085 (UniProtKB/Swiss-Prot), E9PSP9 (UniProtKB/Swiss-Prot), A0A0G2K1U1 (UniProtKB/TrEMBL), A6HQN8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGP
IDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCK
VEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLN
KPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSAPNVKNSNYCLPSYTAYKNYDYSEPGRNNEQ
PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQM
WSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGR
PDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLE
VYLVRMDPLAKPMQYKVIVPKIGNILDLCTALSALSGVPADKMIVTDIYNHRFHRIFAMDENLS
SIMERDDIYVFEININRTEDTEHVVIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDK
LYNLLLLRMCRYVKMSTETEETDGPLRCCEDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQ
ELPSENENSQSEDSVGGDNDSENGLCTEETCKGRLTGHKKRLFTFQFNNLGNTDINYIKDDTRH
IRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKRPFVKLKDCIELFTT
KEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDM
SEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSSASEDQIVSKAA
YVLFYQRQDTFSGTGFFPLDRETKGASAATGVPLESDEDSNDNDNDLENENCMHTN

hide sequence

RefSeq Acc Id:

XP_006241493 ⟸ XM_006241431

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAEGGAADLDTQRSDIATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGP
IDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCK
VEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMSNTFEPLN
KPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSAPKSPGASNFSTLPKISPSSLSNNYNNINNR
NVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLND
KYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQEL
LAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVC
PECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDLCTALSAL
SGVPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVVIPVCLREKFR
HSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKMSTETEETDGPLRCCEDQNIN
GNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCKGQL
TGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAE
DFEKHESVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLV
VHLKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFA
KNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASAATGVPLE
SDEDSNDNDNDLENENCMHTN

hide sequence

RefSeq Acc Id:	XP_008763598 ⟸ XM_008765376
- Peptide Label:	isoform X4
- UniProtKB:	Q9R085 (UniProtKB/Swiss-Prot), E9PSP9 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKYMS NTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSAPKSPGASNFSTLPKISPSSLSNN YNNINNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPL TEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQ QQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGL FKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDL CTALSALSGVPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVVIPV CLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKMSTETEETDGPLRC CEDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTE ETCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRY FDENAAEDFEKHESVEYKPPKRPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLW SLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGG GHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQRQDTFSGTGFFPLDRETKGASA ATGVPLESDEDSNDNDNDLENENCMHTN hide sequence

Ensembl Acc Id:

ENSRNOP00000071983 ⟸ ENSRNOT00000079410

Ensembl Acc Id:

ENSRNOP00000034485 ⟸ ENSRNOT00000031191

RefSeq Acc Id:	XP_038934279 ⟸ XM_039078351
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038934278 ⟸ XM_039078350
- Peptide Label:	isoform X7
- UniProtKB:	A6HQP0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934281 ⟸ XM_039078353
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063119023 ⟸ XM_063262953
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063119026 ⟸ XM_063262956
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063119024 ⟸ XM_063262954
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063119025 ⟸ XM_063262955
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063119028 ⟸ XM_063262958
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063119027 ⟸ XM_063262957
- Peptide Label:	isoform X10

Protein Domains

DUSP USP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9R085-F1-model_v2	AlphaFold	Q9R085	1-952	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695238

Promoter ID:

EPDNEW_R5762

Type:

initiation region

Name:

Usp15_1

Description:

ubiquitin specific peptidase 15

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	66,595,766 - 66,595,826	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628795	AgrOrtholog
BioCyc Gene	G2FUF-33843	BioCyc
Ensembl Genes	ENSRNOG00000023202	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000031191	ENTREZGENE
	ENSRNOT00000079410	ENTREZGENE
Gene3D-CATH	3.30.2230.10	UniProtKB/Swiss-Prot
	Cysteine proteinases	UniProtKB/Swiss-Prot
	Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1	UniProtKB/Swiss-Prot
InterPro	DUSP-like_sf	UniProtKB/Swiss-Prot
	Papain-like_cys_pep_sf	UniProtKB/Swiss-Prot
	Pept_C19_DUSP	UniProtKB/Swiss-Prot
	Peptidase_C19_UCH	UniProtKB/Swiss-Prot
	RNA3'P_cycl/enolpyr_Trfase_a/b	UniProtKB/Swiss-Prot
	Ub_carboxyl-term_hydrolase	UniProtKB/Swiss-Prot
	Ub_USP-typ	UniProtKB/Swiss-Prot
	Ubiquitin-like_domsf	UniProtKB/Swiss-Prot
	USP_C	UniProtKB/Swiss-Prot
	USP_CS	UniProtKB/Swiss-Prot
	USP_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:171329	UniProtKB/Swiss-Prot
NCBI Gene	171329	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/Swiss-Prot
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15	UniProtKB/Swiss-Prot
Pfam	DUSP	UniProtKB/Swiss-Prot
	Ubiquitin_3	UniProtKB/Swiss-Prot
	UCH	UniProtKB/Swiss-Prot
	USP7_C2	UniProtKB/Swiss-Prot
PhenoGen	Usp15	PhenoGen
PROSITE	DUSP	UniProtKB/Swiss-Prot
	USP_1	UniProtKB/Swiss-Prot
	USP_2	UniProtKB/Swiss-Prot
	USP_3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000023202	RatGTEx
SMART	DUSP	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF143791	UniProtKB/Swiss-Prot
	SSF54001	UniProtKB/Swiss-Prot
	SSF54236	UniProtKB/Swiss-Prot
	SSF55205	UniProtKB/Swiss-Prot
UniProt	A0A0A0MY07	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K1U1	ENTREZGENE, UniProtKB/TrEMBL
	A6HQN8	ENTREZGENE, UniProtKB/TrEMBL
	A6HQN9	ENTREZGENE, UniProtKB/TrEMBL
	A6HQP0	ENTREZGENE, UniProtKB/TrEMBL
	E9PSP9	ENTREZGENE
	Q9R085	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	E9PSP9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Name	Description	Reference	Status
2006-03-30	Usp15	ubiquitin specific peptidase 15	ubiquitin specific protease 15	Name updated	1299863	APPROVED
2004-02-26	Usp15	ubiquitin specific protease 15		Symbol and Name status set to approved	625702	APPROVED
2003-02-27	Usp15	ubiquitin specific protease 15		Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expression is developmentally regulated in liver, spinal cord and brain	634484

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

RGD Manual Annotations

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Imported Disease Annotations - CTD

RGD Manual Annotations