Rims3 (regulating synaptic membrane exocytosis 3) - Rat Genome Database

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Gene: Rims3 (regulating synaptic membrane exocytosis 3) Rattus norvegicus
Analyze
Symbol: Rims3
Name: regulating synaptic membrane exocytosis 3
RGD ID: 628762
Description: Predicted to enable transmembrane transporter binding activity. Predicted to be a structural constituent of presynaptic active zone. Involved in calcium-ion regulated exocytosis and regulation of synapse organization. Acts upstream of or within regulation of synaptic vesicle exocytosis. Is active in glutamatergic synapse and postsynaptic cytosol. Orthologous to human RIMS3 (regulating synaptic membrane exocytosis 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Nim2; Nim3; rab-3-interacting molecule 3; regulating synaptic membrane exocytosis protein 3; RIM 3; RIM3 gamma
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85139,714,302 - 139,754,145 (+)NCBIGRCr8
mRatBN7.25134,429,092 - 134,468,935 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5134,435,829 - 134,640,489 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5137,156,405 - 137,196,267 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05138,912,890 - 138,952,753 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05138,933,480 - 138,973,342 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05139,790,395 - 139,819,014 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5139,783,951 - 139,819,016 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05143,583,599 - 143,612,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45141,449,059 - 141,477,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15141,454,284 - 141,482,527 (+)NCBI
Celera5132,990,363 - 133,018,593 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
atrazine  (EXP)
benzene  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
flavonoids  (EXP)
genistein  (ISO)
glycidol  (EXP)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
lipopolysaccharide  (ISO)
maneb  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentanal  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propanal  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
thapsigargin  (ISO)
thiram  (ISO)
trichloroethene  (EXP)
trichostatin A  (EXP,ISO)
triphenyl phosphate  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. RIM3¿ and RIM4¿ are key regulators of neuronal arborization. Alvarez-Baron E, etal., J Neurosci. 2013 Jan 9;33(2):824-39. doi: 10.1523/JNEUROSCI.2229-12.2013.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. RIM3gamma is a postsynaptic protein in the rat central nervous system. Liang F, etal., J Comp Neurol. 2007 Aug 1;503(4):501-10. doi: 10.1002/cne.21403.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Rab3-interacting molecule gamma isoforms lacking the Rab3-binding domain induce long lasting currents but block neurotransmitter vesicle anchoring in voltage-dependent P/Q-type Ca2+ channels. Uriu Y, etal., J Biol Chem. 2010 Jul 9;285(28):21750-67. doi: 10.1074/jbc.M110.101311. Epub 2010 May 7.
8. The RIM/NIM family of neuronal C2 domain proteins. Interactions with Rab3 and a new class of Src homology 3 domain proteins. Wang Y, etal., J Biol Chem 2000 Jun 30;275(26):20033-44.
Additional References at PubMed
PMID:12620390  


Genomics

Comparative Map Data
Rims3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85139,714,302 - 139,754,145 (+)NCBIGRCr8
mRatBN7.25134,429,092 - 134,468,935 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5134,435,829 - 134,640,489 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5137,156,405 - 137,196,267 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05138,912,890 - 138,952,753 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05138,933,480 - 138,973,342 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05139,790,395 - 139,819,014 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5139,783,951 - 139,819,016 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05143,583,599 - 143,612,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45141,449,059 - 141,477,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15141,454,284 - 141,482,527 (+)NCBI
Celera5132,990,363 - 133,018,593 (+)NCBICelera
Cytogenetic Map5q36NCBI
RIMS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38140,620,680 - 40,692,066 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl140,620,680 - 40,665,682 (-)EnsemblGRCh38hg38GRCh38
GRCh37141,086,352 - 41,131,354 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36140,858,939 - 40,903,915 (-)NCBINCBI36Build 36hg18NCBI36
Build 34140,755,444 - 40,800,417NCBI
Celera139,368,745 - 39,413,732 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef139,204,205 - 39,249,067 (-)NCBIHuRef
CHM1_1141,202,239 - 41,247,200 (-)NCBICHM1_1
T2T-CHM13v2.0140,489,861 - 40,544,972 (-)NCBIT2T-CHM13v2.0
Rims3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394120,711,976 - 120,753,777 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4120,712,013 - 120,753,776 (+)EnsemblGRCm39 Ensembl
GRCm384120,854,779 - 120,896,580 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4120,854,816 - 120,896,579 (+)EnsemblGRCm38mm10GRCm38
MGSCv374120,550,474 - 120,564,165 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364120,375,504 - 120,389,195 (+)NCBIMGSCv36mm8
Celera4119,596,297 - 119,610,071 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map456.58NCBI
Rims3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955537489,392 - 522,299 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955537483,717 - 522,053 (-)NCBIChiLan1.0ChiLan1.0
RIMS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21186,153,304 - 186,224,862 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11185,294,568 - 185,366,114 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,886,961 - 39,958,519 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1141,233,860 - 41,278,282 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl141,239,798 - 41,278,282 (-)Ensemblpanpan1.1panPan2
RIMS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1152,353,876 - 2,391,742 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl152,353,693 - 2,404,431 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha152,612,164 - 2,653,723 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0152,442,973 - 2,484,475 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl152,442,760 - 2,493,363 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1152,348,666 - 2,390,205 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0152,408,787 - 2,450,270 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0152,424,598 - 2,466,154 (+)NCBIUU_Cfam_GSD_1.0
Rims3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505856,487,166 - 56,528,251 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647422,317,461 - 22,353,082 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647422,311,946 - 22,353,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIMS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6170,506,426 - 170,546,933 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16170,506,392 - 170,546,939 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RIMS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12092,255,143 - 92,302,108 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2092,255,195 - 92,296,239 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603324,578,764 - 24,625,743 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rims3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462489289,691 - 123,037 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462489283,904 - 122,978 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rims3
175 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:61
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000015033
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
7365049Bp359Blood pressure QTL 359arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128071929134724733Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat

Markers in Region
D5Rat169  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85139,724,563 - 139,724,757 (+)Marker Load Pipeline
mRatBN7.25134,439,349 - 134,439,543 (+)MAPPERmRatBN7.2
Rnor_6.05139,793,916 - 139,794,109NCBIRnor6.0
Rnor_5.05143,587,120 - 143,587,313UniSTSRnor5.0
RGSC_v3.45141,452,579 - 141,452,773RGDRGSC3.4
RGSC_v3.45141,452,580 - 141,452,773UniSTSRGSC3.4
RGSC_v3.15141,457,806 - 141,457,999RGD
Celera5132,993,884 - 132,994,077UniSTS
RH 3.4 Map5875.2UniSTS
RH 3.4 Map5875.2RGD
RH 2.0 Map5870.0RGD
SHRSP x BN Map571.7699RGD
Cytogenetic Map5q36UniSTS
RH130458  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25134,448,863 - 134,449,080 (+)MAPPERmRatBN7.2
Rnor_6.05139,803,606 - 139,803,822NCBIRnor6.0
Rnor_5.05143,596,810 - 143,597,026UniSTSRnor5.0
RGSC_v3.45141,462,094 - 141,462,310UniSTSRGSC3.4
Celera5133,003,398 - 133,003,614UniSTS
RH 3.4 Map5875.5UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 4 31 113 66 62 36 17 36 6 143 65 93 29 59 26

Sequence


Ensembl Acc Id: ENSRNOT00000015033   ⟹   ENSRNOP00000015034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5134,435,829 - 134,640,489 (+)Ensembl
Rnor_6.0 Ensembl5139,790,395 - 139,819,016 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081333   ⟹   ENSRNOP00000074454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5139,783,951 - 139,819,016 (+)Ensembl
RefSeq Acc Id: NM_022931   ⟹   NP_075220
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85139,714,320 - 139,754,145 (+)NCBI
mRatBN7.25134,429,106 - 134,468,933 (+)NCBI
Rnor_6.05139,790,395 - 139,819,014 (+)NCBI
Rnor_5.05143,583,599 - 143,612,218 (+)NCBI
RGSC_v3.45141,449,059 - 141,477,301 (+)RGD
Celera5132,990,363 - 133,018,593 (+)RGD
Sequence:
RefSeq Acc Id: XM_039110727   ⟹   XP_038966655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85139,714,302 - 139,754,142 (+)NCBI
mRatBN7.25134,429,092 - 134,468,935 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001417032 (Get FASTA)   NCBI Sequence Viewer  
  NP_075220 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966655 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF81656 (Get FASTA)   NCBI Sequence Viewer  
  EDL80347 (Get FASTA)   NCBI Sequence Viewer  
  EDL80348 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015034.1
GenBank Protein Q9JIR3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_075220   ⟸   NM_022931
- UniProtKB: Q9JIR3 (UniProtKB/Swiss-Prot),   G3V7H4 (UniProtKB/TrEMBL),   A6IRZ7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074454   ⟸   ENSRNOT00000081333
Ensembl Acc Id: ENSRNOP00000015034   ⟸   ENSRNOT00000015033
RefSeq Acc Id: XP_038966655   ⟸   XM_039110727
- Peptide Label: isoform X1
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JIR3-F1-model_v2 AlphaFold Q9JIR3 1-307 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628762 AgrOrtholog
BioCyc Gene G2FUF-40050 BioCyc
Ensembl Genes ENSRNOG00000011171 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015033.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rim-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:65025 UniProtKB/Swiss-Prot
NCBI Gene 65025 ENTREZGENE
PANTHER PTHR12157 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rims3 PhenoGen
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011171 RatGTEx
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6IRZ7 ENTREZGENE, UniProtKB/TrEMBL
  G3V7H4 ENTREZGENE, UniProtKB/TrEMBL
  Q9JIR3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Rims3  regulating synaptic membrane exocytosis 3    nim3 protein  Name updated 1299863 APPROVED
2004-09-10 Rims3  nim3 protein  Nim3    Symbol and Name updated 1299863 APPROVED
2003-04-09 Nim3  nim3 protein      Symbol and Name updated 629477 APPROVED
2003-03-06 Nim3  nim3 protein  Nim2  Nim2  Data merged from RGD:620947 628472 PROVISIONAL
2003-02-27 Nim3  Nim3      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-08-07 Nim2  Nim2      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_product member of the RIM/NIM family of C2 domain proteins 633421
gene_transcript encoded by the 3'end of RIM2, contains a unique N-terminal region with the C-terminal region of RIM2 633421