Mbnl1 (muscleblind-like splicing regulator 1)

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Gene: Mbnl1 (muscleblind-like splicing regulator 1) Rattus norvegicus

Analyze

Symbol:

Mbnl1

Name:

muscleblind-like splicing regulator 1

RGD ID:

628668

Description:

Enables regulatory region RNA binding activity. Predicted to be involved in several processes, including embryonic limb morphogenesis; myoblast differentiation; and regulation of RNA splicing. Predicted to act upstream of or within alternative mRNA splicing, via spliceosome; mRNA splice site recognition; and skeletal muscle tissue development. Predicted to be located in cytoplasmic stress granule; cytosol; and nucleoplasm. Predicted to be active in nucleus. Orthologous to human MBNL1 (muscleblind like splicing regulator 1); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Mbnl; muscleblind-like; muscleblind-like (Drosophila); muscleblind-like 1; muscleblind-like 1 (Drosophila); muscleblind-like protein 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MBNL1 (muscleblind like splicing regulator 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Mbnl1 (muscleblind like splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mbnl1 (muscleblind like splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MBNL1 (muscleblind like splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MBNL1 (muscleblind like splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mbnl1 (muscleblind like splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MBNL1 (muscleblind like splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MBNL1 (muscleblind like splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mbnl1 (muscleblind like splicing regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Mbnl1 (muscleblind like splicing regulator 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MBNL1 (muscleblind like splicing regulator 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mbnl1 (muscleblind-like splicing regulator 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mbl-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mbl	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mbnl1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	144,639,819 - 144,814,395 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	144,670,285 - 144,814,368 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	151,355,648 - 151,467,147 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	149,455,585 - 149,566,848 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	144,087,992 - 144,199,253 (+)	NCBI	Rnor_WKY
Rnor_6.0	2	150,698,248 - 150,867,791 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	150,756,185 - 150,869,690 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	170,117,575 - 170,293,074 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	149,891,873 - 150,004,089 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	149,942,293 - 149,942,359 (+)	NCBI
Celera	2	139,098,823 - 139,210,061 (+)	NCBI		Celera
Cytogenetic Map	2	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Familial Prostate Cancer (ISO)

genetic disease (ISO)

Myotonia (ISO)

myotonic disease (ISS)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

bortezomib (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dexamethasone (EXP)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

fulvestrant (ISO)

geldanamycin (ISO)

genistein (ISO)

hydrogen cyanide (ISO)

indometacin (ISO)

irinotecan (ISO)

kojic acid (ISO)

leflunomide (ISO)

levonorgestrel (ISO)

maneb (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

potassium cyanide (ISO)

rimonabant (ISO)

SB 431542 (ISO)

selenium atom (ISO)

serpentine asbestos (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

testosterone (EXP)

testosterone undecanoate (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

Triptolide (EXP)

tris(2-butoxyethyl) phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alternative mRNA splicing, via spliceosome (ISO)

biological_process (ND)

embryonic limb morphogenesis (ISO)

in utero embryonic development (ISO)

mRNA splice site recognition (ISO)

myoblast differentiation (ISO)

nervous system development (ISO)

regulation of RNA splicing (IBA,ISO)

RNA splicing (ISO)

skeletal muscle tissue development (ISO)

Cellular Component

cytoplasm (ISO)

cytoplasmic stress granule (ISO)

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

Molecular Function

double-stranded RNA binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

regulatory region RNA binding (IDA)

RNA binding (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Dynamic integration of splicing within gene regulatory pathways.	Braunschweig U, etal., Cell. 2013 Mar 14;152(6):1252-69. doi: 10.1016/j.cell.2013.02.034.
2.	Gene expression profiling in Brodmann's area 46 from subjects with schizophrenia.	Dean B, etal., Aust N Z J Psychiatry. 2007 Apr;41(4):308-20.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	MBNL1 and PTB cooperate to repress splicing of Tpm1 exon 3.	Gooding C, etal., Nucleic Acids Res. 2013 May;41(9):4765-82. doi: 10.1093/nar/gkt168. Epub 2013 Mar 19.
5.	Developmental expression of mouse muscleblind genes Mbnl1, Mbnl2 and Mbnl3.	Kanadia RN, etal., Gene Expr Patterns 2003 Aug;3(4):459-62.
6.	A muscleblind knockout model for myotonic dystrophy.	Kanadia RN, etal., Science 2003 Dec 12;302(5652):1978-80.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:10970838	PMID:15257297	PMID:15830352	PMID:16717059	PMID:16946708	PMID:18335541	PMID:19075228	PMID:19720736	PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Mbnl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	144,639,819 - 144,814,395 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	144,670,285 - 144,814,368 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	151,355,648 - 151,467,147 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	2	149,455,585 - 149,566,848 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	2	144,087,992 - 144,199,253 (+)	NCBI	Rnor_WKY
Rnor_6.0	2	150,698,248 - 150,867,791 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	150,756,185 - 150,869,690 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	170,117,575 - 170,293,074 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	149,891,873 - 150,004,089 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	149,942,293 - 149,942,359 (+)	NCBI
Celera	2	139,098,823 - 139,210,061 (+)	NCBI		Celera
Cytogenetic Map	2	q31	NCBI

MBNL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	152,243,632 - 152,465,780 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	3	152,243,828 - 152,465,780 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	151,961,421 - 152,183,569 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	153,468,519 - 153,666,259 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	150,403,912 - 150,601,668 (+)	NCBI		Celera
Cytogenetic Map	3	q25.1-q25.2	NCBI
HuRef	3	149,377,001 - 149,574,674 (+)	NCBI		HuRef
CHM1_1	3	151,948,828 - 152,146,588 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	155,011,321 - 155,233,681 (+)	NCBI		T2T-CHM13v2.0

Mbnl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	60,380,209 - 60,537,171 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	60,380,251 - 60,537,171 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	60,472,559 - 60,629,750 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	60,472,830 - 60,629,750 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	60,305,174 - 60,433,670 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	60,589,181 - 60,717,677 (+)	NCBI		MGSCv36	mm8
Celera	3	60,219,667 - 60,332,581 (+)	NCBI		Celera
Cytogenetic Map	3	D	NCBI

Mbnl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955448	3,864,843 - 4,065,122 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955448	3,864,862 - 4,065,122 (+)	NCBI	ChiLan1.0	ChiLan1.0

MBNL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	3	150,164,008 - 150,362,863 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	149,288,323 - 149,487,635 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	156,858,039 - 157,057,239 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	156,888,763 - 157,054,207 (+)	Ensembl	panpan1.1		panPan2

MBNL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	46,697,755 - 46,941,300 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	46,737,790 - 46,938,233 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	46,601,940 - 46,804,866 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	47,365,203 - 47,568,448 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	47,290,541 - 47,567,960 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	46,951,402 - 47,154,458 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	47,007,248 - 47,210,007 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	47,287,802 - 47,491,349 (+)	NCBI		UU_Cfam_GSD_1.0

Mbnl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	89,153,246 - 89,338,851 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936519	419,571 - 580,730 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936519	419,332 - 580,706 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MBNL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	92,491,808 - 92,696,230 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	92,491,778 - 92,696,235 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	100,593,105 - 100,741,224 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MBNL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	38,208,694 - 38,427,867 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	38,208,038 - 38,375,273 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	10,962,106 - 11,182,754 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mbnl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	29,959,580 - 30,113,245 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	29,930,292 - 30,112,145 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mbnl1
693 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	113
Count of miRNA genes:	101
Interacting mature miRNAs:	106
Transcripts:	ENSRNOT00000036808
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	43154682	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43162366	148478373	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	72532993	157142209	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	76539322	150540526	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	102803808	147803808	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	104559726	149559726	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	112103657	148076632	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1354594	Despr10	Despair related QTL 10		0.00000249	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	114654253	159654253	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	114837527	185876470	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
5135226	Leukc2	Leukocyte quantity QTL 2			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	2	118111229	149559726	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	118111229	157142209	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	118189491	163189491	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	129164097	152195315	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	135552573	202446871	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
12879841	Cm87	Cardiac mass QTL 87		0.026	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	142323368	146786035	Rat
12879842	Cm88	Cardiac mass QTL 88		0.042	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	142323368	146786035	Rat
12879843	Am3	Aortic mass QTL 3		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	142323368	146786035	Rat
12879844	Kidm62	Kidney mass QTL 62		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	142323368	146786035	Rat
7488933	Bp368	Blood pressure QTL 368		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	142323368	147803808	Rat
1549828	Bp258	Blood pressure QTL 258		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	142323368	150650069	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	143657411	190602963	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	57	41	19	41	8	10	66	35	36	11	8
Low		1						1	8		5
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001412543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY148302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000036808 ⟹ ENSRNOP00000033304

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	144,670,285 - 144,807,145 (+)	Ensembl
Rnor_6.0 Ensembl	2	150,756,258 - 150,867,775 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088461 ⟹ ENSRNOP00000070159

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	144,670,285 - 144,813,227 (+)	Ensembl
Rnor_6.0 Ensembl	2	150,756,185 - 150,869,690 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097984 ⟹ ENSRNOP00000094816

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	144,670,334 - 144,814,368 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102621 ⟹ ENSRNOP00000095306

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	144,670,285 - 144,813,227 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106022 ⟹ ENSRNOP00000081828

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	144,670,334 - 144,814,368 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111474 ⟹ ENSRNOP00000076663

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	144,670,285 - 144,814,286 (+)	Ensembl

RefSeq Acc Id:

NM_001191566 ⟹ NP_001178495

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,697,833 - 144,809,367 (+)	NCBI
Rnor_6.0	2	150,756,258 - 150,867,775 (+)	NCBI
Rnor_5.0	2	170,117,575 - 170,293,074 (+)	NCBI
Celera	2	139,098,823 - 139,210,061 (+)	NCBI

Sequence:

show sequence

ATGGCTGTTAGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGT
TTCAAAGGGGGACTTGCTCACGACCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTG
CCAAGTTGAAAATGGACGAGTAATCGCCTGCTTTGATTCACTGAAAGGTCGTTGCTCCAGAGAA
AACTGCAAATATCTTCATCCACCCCCTCATTTAAAAACACAATTGGAGATAAATGGGCGGAATA
ACTTGATTCAGCAGAAGAACATGGCCATGCTGGCCCAGCAAATGCAGTTAGCCAACGCCATGAT
GCCCGGTGCCCCACTGCAGCCCGTGCCAATGTTTTCAGTTGCACCAAGCTTAGCCACCAATGCA
TCAGCAGCCTTTAATCCCTACCTGGGGCCTGTTTCCCCAAGCCTGGTTCCAGCAGAGATCTTGC
CGACTGCACCAATGTTGGTCACGGGGAATCCTGGAGTTCCGGTGCCAGCAGCTGCTGCAGCTGC
TGCACAGAAGTTAATGCGGACAGACAGACTGGAGGTGTGCCGAGAGTACCAGCGTGGCAATTGC
AACCGAGGAGAAAATGACTGTCGATTTGCTCATCCTGCTGACAGCACAATGATTGATACCAATG
ACAACACAGTCACTGTCTGCATGGATTACATCAAGGGGAGATGCTCTCGGGAAAAGTGCAAATA
CTTCCATCCCCCCGCACACCTGCAAGCCAAGATCAAGGCTGCTCAATACCAGGTCAACCAGGCT
GCAGCAGCGCAGGCTGCAGCTACTGCAGCTGCCATGACTCAGTCGGCTGTCAAATCACTGAAGC
GACCCCTCGAGGCAACCTTTGACCTGGGAATTCCTCAAGCTGTACTTCCCCCATTGCCAAAGAG
GCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACGGGTATTTTCCAATACCAA
CAGGCTCTAGCCAACATGCAGTTACAGCAGCATACAGCGTTCCTCCCACCAGTTCCCATGGTGC
ACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGC
AACAGCCACAGCCAACCAGATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTT
ACCCAGATGTAG

hide sequence

RefSeq Acc Id:

XM_008761039 ⟹ XP_008759261

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,802,410 (+)	NCBI
Rnor_6.0	2	150,728,779 - 150,859,225 (+)	NCBI

Sequence:

show sequence

CGTGGCGGGCATCCCGGAGTAGCGATCCCACAATGCCCCGGGCAGTCGGGGCCCCGGCGGGCAG
CCTGCACGGCCACGTGAGAGGTTGGTACTAAGAAGTGCCTTTCCTGACGTCTCTGCTGCTTGGA
ACCGCTTCTAGAGCAGCCTCTGCTTTTGCCTTGCTTGCTGCCAGCTAGACTGTGACGACAGCAC
ATCCGCCCTCCACCTCTAGCCCAGACACCCCCATTTCTACTTCTAATCAGGAGAAAAGCTCTGA
GTATCTGCCATTGCCCTAGGCTGCTTTAGTTTAGAAGAAAAGTTTGCTGAAAAAGTAAGATACC
TTCTGCCAGGAAATCAAGGAGGAAAAAAAAATCATTTTCTCGATTTTGCTCTAAACTGCTGCAT
CTGTCTATGCCAAACTAATCAATACCGATTGCACCACCAAACTCCATCGCAAATCAGCTGTGAG
GAGATCCCCTGTCAGACAACTTTGCTGAGAGCAGCTTGGAAATTCGGTGTCAAAGGGTCTGCCA
CGTTTTCATGCTTGCATTTTGGGCTCCAAATTGGCACTGGGAAGGGGTTACGAGCACAAGGCTG
ATTCCAGGCCCTCCTTTAAACACCCATCTACTTACAACCGTGGTATTTCTCTAAAAACCAAAAC
CTCTTTGAATTAACAGTTTCATGCTGTGAATTTCTAGCGGAGGTCTTTCCCTTGATATTGAAGT
CACACTTTTCCATGTGCCGTTAAAGCGGGGACTGGGGAAGCAGCCTTTCGGACATTTTCACAGT
CATCTCACACTTCTGAGTTTTATCAGTTCCTATTTTGTTTAGTTTTTGTCTTTTGTTTTGGGTT
GCTGATTTTTTTCTTTTCTTTTCTTTTTTCCTTTTTTTTTTTTTTTTTGAGAGGGATTGGGTTT
GTTGGTTTCATTGAACATTTAACTACCTGTAAAATATAAACATGGCTGTTAGTGTCACACCAAT
TCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTTCAAAGGGGGACTTGCTCACGA
CCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAA
TCGCCTGCTTTGATTCACTGAAAGGTCGTTGCTCCAGAGAAAACTGCAAATATCTTCATCCACC
CCCTCATTTAAAAACACAATTGGAGATAAATGGGCGGAATAACTTGATTCAGCAGAAGAACATG
GCCATGCTGGCCCAGCAAATGCAGTTAGCCAACGCCATGATGCCCGGTGCCCCACTGCAGCCCG
TGAACTTAATGCAACAATCATTCCAAAAAAGAGGGGGGGATTGCATTTCGAGGTGGGAGGGATC
CCCATATTACACCGGCAGTGATACCAATTATCAATACTGTACAGTCGAGCCAATGTTTTCAGTT
GCACCAAGCTTAGCCACCAATGCATCAGCAGCCTTTAATCCCTACCTGGGGCCTGTTTCCCCAA
GCCTGGTTCCAGCAGAGATCTTGCCGACTGCACCAATGTTGGTCACGGGGAATCCTGGAGTTCC
GGTGCCAGCAGCTGCTGCAGCTGCTGCACAGAAGTTAATGCGGACAGACAGACTGGAGGTGTGC
CGAGAGTACCAGCGTGGCAATTGCAACCGAGGAGAAAATGACTGTCGATTTGCTCATCCTGCTG
ACAGCACAATGATTGATACCAATGACAACACAGTCACTGTCTGCATGGATTACATCAAGGGGAG
ATGCTCTCGGGAAAAGTGCAAATACTTCCATCCCCCCGCACACCTGCAAGCCAAGATCAAGGCT
GCTCAATACCAGGTCAACCAGGCTGCAGCAGCGCAGGCTGCAGCTACTGCAGCTGCCATGACTC
AGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTGGGAATTCCTCAAGC
TGTACTTCCCCCATTGCCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTT
AACACGGGTATTTTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAGCAGCATACAGCGT
TCCTCCCACCAGCTGTGTTATGATGCTCTCCTGCTGTAAGACCCCTTTGCCTTCAAGATTTCAC
AATTTTATGAAATGACTCAATTTTGACATTTTCAACCTTTAGTTTGCAAAGTAGACAGTAAAAA
TTTATTTATTCTAGAGCTCTTAAAATGTGCTCTTCGTATTAATTATGCATAGCTAAAATTATTC
TTGTTCCTGTGCTGAAGCTGAAGTAGCCCTAAGTTCCCTTGGTGTTTTAATTTGCTGCTTAGTC
ATCCCCTGGTATTCCTGTTTTATGCTGAGTCATGCAGCCATGATTCAGTTAATTTTCAGTTCGG
TCACATACATATACTCCATACTAAAAGCTCACTTAGTTGGCTAGAAATTTACTATTTAAATATT
CTTAATTTATTTCATAAGTCTTTAAACCTTTTTTTACCTTATGCTTTGAAATAAATCACCAGAC
ACACTAATCTGTTTTTCTTTCTTATACAGTTTTATTTTGA

hide sequence

RefSeq Acc Id:

XM_039101825 ⟹ XP_038957753

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101826 ⟹ XP_038957754

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,639,819 - 144,814,395 (+)	NCBI

RefSeq Acc Id:

XM_039101827 ⟹ XP_038957755

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,639,825 - 144,814,395 (+)	NCBI

RefSeq Acc Id:

XM_039101828 ⟹ XP_038957756

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,695,633 - 144,814,395 (+)	NCBI

RefSeq Acc Id:

XM_039101829 ⟹ XP_038957757

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,914 - 144,814,395 (+)	NCBI

RefSeq Acc Id:

XM_039101830 ⟹ XP_038957758

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101831 ⟹ XP_038957759

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101832 ⟹ XP_038957760

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101833 ⟹ XP_038957761

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101834 ⟹ XP_038957762

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101835 ⟹ XP_038957763

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101836 ⟹ XP_038957764

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101837 ⟹ XP_038957765

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101838 ⟹ XP_038957766

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101839 ⟹ XP_038957767

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101840 ⟹ XP_038957768

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,285 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101841 ⟹ XP_038957769

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101842 ⟹ XP_038957770

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,806,488 (+)	NCBI

RefSeq Acc Id:

XM_039101843 ⟹ XP_038957771

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101844 ⟹ XP_038957772

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101845 ⟹ XP_038957773

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101846 ⟹ XP_038957774

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101847 ⟹ XP_038957775

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101848 ⟹ XP_038957776

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101849 ⟹ XP_038957777

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101850 ⟹ XP_038957778

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,316 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101851 ⟹ XP_038957779

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,639,819 - 144,814,395 (+)	NCBI

RefSeq Acc Id:

XM_039101852 ⟹ XP_038957780

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,639,825 - 144,814,395 (+)	NCBI

RefSeq Acc Id:

XM_039101853 ⟹ XP_038957781

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,697,884 - 144,814,395 (+)	NCBI

RefSeq Acc Id:

XM_039101854 ⟹ XP_038957782

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101855 ⟹ XP_038957783

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,806,488 (+)	NCBI

RefSeq Acc Id:

XM_039101856 ⟹ XP_038957784

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101857 ⟹ XP_038957785

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101859 ⟹ XP_038957787

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101860 ⟹ XP_038957788

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,305 - 144,802,410 (+)	NCBI

RefSeq Acc Id:

XM_039101861 ⟹ XP_038957789

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,316 - 144,814,393 (+)	NCBI

RefSeq Acc Id:

XM_039101862 ⟹ XP_038957790

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	144,670,316 - 144,814,393 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178495	(Get FASTA)	NCBI Sequence Viewer
	NP_001399472	(Get FASTA)	NCBI Sequence Viewer
	XP_008759261	(Get FASTA)	NCBI Sequence Viewer
	XP_038957753	(Get FASTA)	NCBI Sequence Viewer
	XP_038957754	(Get FASTA)	NCBI Sequence Viewer
	XP_038957755	(Get FASTA)	NCBI Sequence Viewer
	XP_038957756	(Get FASTA)	NCBI Sequence Viewer
	XP_038957757	(Get FASTA)	NCBI Sequence Viewer
	XP_038957758	(Get FASTA)	NCBI Sequence Viewer
	XP_038957759	(Get FASTA)	NCBI Sequence Viewer
	XP_038957760	(Get FASTA)	NCBI Sequence Viewer
	XP_038957761	(Get FASTA)	NCBI Sequence Viewer
	XP_038957762	(Get FASTA)	NCBI Sequence Viewer
	XP_038957763	(Get FASTA)	NCBI Sequence Viewer
	XP_038957764	(Get FASTA)	NCBI Sequence Viewer
	XP_038957765	(Get FASTA)	NCBI Sequence Viewer
	XP_038957766	(Get FASTA)	NCBI Sequence Viewer
	XP_038957767	(Get FASTA)	NCBI Sequence Viewer
	XP_038957768	(Get FASTA)	NCBI Sequence Viewer
	XP_038957769	(Get FASTA)	NCBI Sequence Viewer
	XP_038957770	(Get FASTA)	NCBI Sequence Viewer
	XP_038957771	(Get FASTA)	NCBI Sequence Viewer
	XP_038957772	(Get FASTA)	NCBI Sequence Viewer
	XP_038957773	(Get FASTA)	NCBI Sequence Viewer
	XP_038957774	(Get FASTA)	NCBI Sequence Viewer
	XP_038957775	(Get FASTA)	NCBI Sequence Viewer
	XP_038957776	(Get FASTA)	NCBI Sequence Viewer
	XP_038957777	(Get FASTA)	NCBI Sequence Viewer
	XP_038957778	(Get FASTA)	NCBI Sequence Viewer
	XP_038957779	(Get FASTA)	NCBI Sequence Viewer
	XP_038957780	(Get FASTA)	NCBI Sequence Viewer
	XP_038957781	(Get FASTA)	NCBI Sequence Viewer
	XP_038957782	(Get FASTA)	NCBI Sequence Viewer
	XP_038957783	(Get FASTA)	NCBI Sequence Viewer
	XP_038957784	(Get FASTA)	NCBI Sequence Viewer
	XP_038957785	(Get FASTA)	NCBI Sequence Viewer
	XP_038957787	(Get FASTA)	NCBI Sequence Viewer
	XP_038957788	(Get FASTA)	NCBI Sequence Viewer
	XP_038957789	(Get FASTA)	NCBI Sequence Viewer
	XP_038957790	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAN72327	(Get FASTA)	NCBI Sequence Viewer
	EDM14832	(Get FASTA)	NCBI Sequence Viewer
	EDM14833	(Get FASTA)	NCBI Sequence Viewer
	EDM14834	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001178495 ⟸ NM_001191566

- UniProtKB:

F1M9N4 (UniProtKB/TrEMBL), A0A8I6B1J2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRE
NCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSVAPSLATNA
SAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTDRLEVCREYQRGNC
NRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQAKIKAAQYQVNQA
AAAQAAATAAAMTQSAVKSLKRPLEATFDLGIPQAVLPPLPKRPALEKTNGATAVFNTGIFQYQ
QALANMQLQQHTAFLPPVPMVHGATPATVSAATTSATSVPFAATATANQIPIISAEHLTSHKYV
TQM

hide sequence

RefSeq Acc Id:

XP_008759261 ⟸ XM_008761039

- Peptide Label:

isoform X14

- Sequence:

show sequence

MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRE
NCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVNLMQQSFQKRGGD
CISRWEGSPYYTGSDTNYQYCTVEPMFSVAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPML
VTGNPGVPVPAAAAAAAQKLMRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTV
CMDYIKGRCSREKCKYFHPPAHLQAKIKAAQYQVNQAAAAQAAATAAAMTQSAVKSLKRPLEAT
FDLGIPQAVLPPLPKRPALEKTNGATAVFNTGIFQYQQALANMQLQQHTAFLPPAVL

hide sequence

RefSeq Acc Id:

ENSRNOP00000033304 ⟸ ENSRNOT00000036808

RefSeq Acc Id:

ENSRNOP00000070159 ⟸ ENSRNOT00000088461

RefSeq Acc Id:	XP_038957754 ⟸ XM_039101826
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038957779 ⟸ XM_039101851
- Peptide Label:	isoform X22

RefSeq Acc Id:	XP_038957755 ⟸ XM_039101827
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038957780 ⟸ XM_039101852
- Peptide Label:	isoform X22

RefSeq Acc Id:	XP_038957768 ⟸ XM_039101840
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038957753 ⟸ XM_039101825
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038957763 ⟸ XM_039101835
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038957758 ⟸ XM_039101830
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038957766 ⟸ XM_039101838
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038957761 ⟸ XM_039101833
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038957764 ⟸ XM_039101836
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038957775 ⟸ XM_039101847
- Peptide Label:	isoform X19

RefSeq Acc Id:	XP_038957759 ⟸ XM_039101831
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038957769 ⟸ XM_039101841
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038957760 ⟸ XM_039101832
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038957773 ⟸ XM_039101845
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_038957767 ⟸ XM_039101839
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038957782 ⟸ XM_039101854
- Peptide Label:	isoform X23

RefSeq Acc Id:	XP_038957771 ⟸ XM_039101843
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_038957785 ⟸ XM_039101857
- Peptide Label:	isoform X26

RefSeq Acc Id:	XP_038957762 ⟸ XM_039101834
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038957774 ⟸ XM_039101846
- Peptide Label:	isoform X18

RefSeq Acc Id:	XP_038957765 ⟸ XM_039101837
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038957776 ⟸ XM_039101848
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_038957784 ⟸ XM_039101856
- Peptide Label:	isoform X25
- UniProtKB:	A0A0G2JX72 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038957772 ⟸ XM_039101844
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038957787 ⟸ XM_039101859
- Peptide Label:	isoform X27
- UniProtKB:	A0A8I6AQ03 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038957777 ⟸ XM_039101849
- Peptide Label:	isoform X21

RefSeq Acc Id:	XP_038957770 ⟸ XM_039101842
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_038957783 ⟸ XM_039101855
- Peptide Label:	isoform X24

RefSeq Acc Id:	XP_038957788 ⟸ XM_039101860
- Peptide Label:	isoform X28

RefSeq Acc Id:	XP_038957778 ⟸ XM_039101850
- Peptide Label:	isoform X22

RefSeq Acc Id:	XP_038957789 ⟸ XM_039101861
- Peptide Label:	isoform X29

RefSeq Acc Id:	XP_038957790 ⟸ XM_039101862
- Peptide Label:	isoform X30

RefSeq Acc Id:	XP_038957757 ⟸ XM_039101829
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038957756 ⟸ XM_039101828
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038957781 ⟸ XM_039101853
- Peptide Label:	isoform X22

RefSeq Acc Id:

ENSRNOP00000081828 ⟸ ENSRNOT00000106022

RefSeq Acc Id:

ENSRNOP00000095306 ⟸ ENSRNOT00000102621

RefSeq Acc Id:

ENSRNOP00000094816 ⟸ ENSRNOT00000097984

RefSeq Acc Id:

ENSRNOP00000076663 ⟸ ENSRNOT00000111474

Protein Domains

C3H1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JX72-F1-model_v2	AlphaFold	A0A0G2JX72	1-436	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691352

Promoter ID:

EPDNEW_R1877

Type:

single initiation site

Name:

Mbnl1_1

Description:

muscleblind-like splicing regulator 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	150,756,202 - 150,756,262	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628668	AgrOrtholog
BioCyc Gene	G2FUF-52960	BioCyc
Ensembl Genes	ENSRNOG00000014076	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000033304	ENTREZGENE
	ENSRNOP00000033304.6	UniProtKB/TrEMBL
	ENSRNOP00000070159	ENTREZGENE
	ENSRNOP00000070159.2	UniProtKB/TrEMBL
	ENSRNOP00000076663	ENTREZGENE
	ENSRNOP00000076663.1	UniProtKB/TrEMBL
	ENSRNOP00000081828	ENTREZGENE
	ENSRNOP00000081828.1	UniProtKB/TrEMBL
	ENSRNOP00000094816	ENTREZGENE
	ENSRNOP00000094816.1	UniProtKB/TrEMBL
	ENSRNOP00000095306	ENTREZGENE
	ENSRNOP00000095306.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000036808	ENTREZGENE
	ENSRNOT00000036808.6	UniProtKB/TrEMBL
	ENSRNOT00000088461	ENTREZGENE
	ENSRNOT00000088461.2	UniProtKB/TrEMBL
	ENSRNOT00000097984	ENTREZGENE
	ENSRNOT00000097984.1	UniProtKB/TrEMBL
	ENSRNOT00000102621	ENTREZGENE
	ENSRNOT00000102621.1	UniProtKB/TrEMBL
	ENSRNOT00000106022	ENTREZGENE
	ENSRNOT00000106022.1	UniProtKB/TrEMBL
	ENSRNOT00000111474	ENTREZGENE
	ENSRNOT00000111474.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1370.210	UniProtKB/TrEMBL
InterPro	Znf_CCCH	UniProtKB/TrEMBL
KEGG Report	rno:282635	UniProtKB/TrEMBL
NCBI Gene	282635	ENTREZGENE
PANTHER	MUSCLEBLIND-LIKE PROTEIN	UniProtKB/TrEMBL
	MUSCLEBLIND-LIKE PROTEIN 1	UniProtKB/TrEMBL
Pfam	zf-CCCH	UniProtKB/TrEMBL
	zf-CCCH_2	UniProtKB/TrEMBL
PhenoGen	Mbnl1	PhenoGen
PROSITE	ZF_C3H1	UniProtKB/TrEMBL
SMART	ZnF_C3H1	UniProtKB/TrEMBL
UniProt	A0A0G2JX72	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y4V0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZVU8_RAT	UniProtKB/TrEMBL
	A0A8I6AQ03	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B1J2	ENTREZGENE, UniProtKB/TrEMBL
	F1M9N4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-02-25	Mbnl1	muscleblind-like splicing regulator 1	Mbnl1	muscleblind-like 1 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Mbnl1	muscleblind-like 1 (Drosophila)	Mbnl	muscleblind-like (Drosophila)	Symbol and Name updated	1299863	APPROVED
2003-02-27	Mbnl	muscleblind-like (Drosophila)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

RGD Manual Annotations

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Imported Disease Annotations - CTD

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