Nfib (nuclear factor I/B) - Rat Genome Database

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Gene: Nfib (nuclear factor I/B) Mus musculus
Analyze
Symbol: Nfib
Name: nuclear factor I/B
RGD ID: 62307
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including lung epithelial cell differentiation; negative regulation of cell population proliferation; and nervous system development. Acts upstream of or within several processes, including exit from mitosis; nervous system development; and salivary gland development. Located in cerebellar mossy fiber and nucleus. Is expressed in several structures, including alimentary system; genitourinary system; limb; nervous system; and respiratory system. Orthologous to human NFIB (nuclear factor I B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6720429L07Rik; CCAAT-box-binding transcription factor; CTF; E030026I10Rik; NF-I/B; NF1-B; NFI-B; nuclear factor 1 B-type; nuclear factor 1/B; putative nuclear factor I/B isoform; TGGCA-binding protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39482,208,410 - 82,424,988 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl482,208,410 - 82,623,987 (-)EnsemblGRCm39 Ensembl
GRCm38482,290,173 - 82,506,751 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl482,290,173 - 82,705,750 (-)EnsemblGRCm38mm10GRCm38
MGSCv37481,936,077 - 82,151,212 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36481,766,962 - 81,976,354 (-)NCBIMGSCv36mm8
Celera480,824,138 - 81,039,259 (-)NCBICelera
Cytogenetic Map4C3NCBI
cM Map438.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
acetamide  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP,ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[ghi]perylene  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Brodifacoum  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cyclosporin A  (EXP,ISO)
cyproconazole  (EXP)
cytarabine  (ISO)
dibenzo[a,l]pyrene  (ISO)
dichloromethane  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
ethylbenzene  (ISO)
fenthion  (EXP)
flutamide  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gamma-hexachlorocyclohexane  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
L-ascorbic acid  (EXP)
leflunomide  (ISO)
malathion  (ISO)
maneb  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
methoxychlor  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
o-xylene  (ISO)
oxaliplatin  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP,ISO)
phenol red  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
propiconazole  (EXP)
Ptaquiloside  (EXP)
pyridaben  (EXP)
rac-lactic acid  (ISO)
SB 431542  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sulindac  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
toluene  (ISO)
topotecan  (ISO)
trichloroethene  (EXP,ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterior commissure morphogenesis  (IMP)
brain development  (ISO)
cell differentiation involved in salivary gland development  (IMP)
cell population proliferation  (IMP)
cell proliferation in forebrain  (IMP)
chondrocyte differentiation  (IMP)
club cell differentiation  (IMP)
commissural neuron axon guidance  (IMP)
DNA replication  (IEA)
exit from mitosis  (IMP)
forebrain development  (IMP)
gene expression  (IGI,IMP)
generation of neurons  (IMP)
glandular epithelial cell differentiation  (IMP)
glial cell differentiation  (IMP)
glial cell fate specification  (IMP)
glial cell proliferation  (IMP)
hindbrain development  (IMP)
lung ciliated cell differentiation  (IMP)
lung development  (IMP)
negative regulation of epithelial cell proliferation involved in lung morphogenesis  (IMP)
negative regulation of mesenchymal cell proliferation involved in lung development  (IMP)
negative regulation of miRNA transcription  (IEA,ISO)
negative regulation of stem cell proliferation  (IMP)
negative regulation of transcription by RNA polymerase II  (ISO)
neural precursor cell proliferation  (IMP)
neurogenesis  (IMP)
neuron fate specification  (IMP)
positive regulation of DNA-templated transcription  (ISO)
positive regulation of transcription by RNA polymerase II  (IDA,IMP,ISO)
principal sensory nucleus of trigeminal nerve development  (IMP)
regeneration  (IMP)
regulation of DNA-templated transcription  (IEA)
regulation of transcription by RNA polymerase II  (IBA)
response to bacterium  (IEP)
response to wounding  (IMP)
retina development in camera-type eye  (IMP)
salivary gland cavitation  (IMP)
stem cell population maintenance  (IMP)
stem cell proliferation  (IMP)
tissue homeostasis  (IMP)
type I pneumocyte differentiation  (IMP)
type II pneumocyte differentiation  (IMP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal cerebellar granule cell morphology  (IAGP)
abnormal corpus callosum morphology  (IAGP)
abnormal craniofacial development  (IAGP)
abnormal glial cell morphology  (IAGP)
abnormal hippocampal fimbria morphology  (IAGP)
abnormal hippocampus CA3 region morphology  (IAGP)
abnormal hippocampus development  (IAGP)
abnormal lung development  (IAGP)
abnormal lung morphology  (IAGP)
abnormal lung saccule morphology  (IAGP)
abnormal major salivary gland morphology  (IAGP)
abnormal pons morphology  (IAGP)
abnormal pulmonary alveolus epithelial cell morphology  (IAGP)
abnormal respiration  (IAGP)
abnormal respiratory system physiology  (IAGP)
abnormal submandibular gland development  (IAGP)
absent cerebellar foliation  (IAGP)
absent corpus callosum  (IAGP)
absent dentate gyrus  (IAGP)
absent hippocampus CA3 region  (IAGP)
absent lung saccules  (IAGP)
atelectasis  (IAGP)
cyanosis  (IAGP)
decreased fetal size  (IAGP)
decreased submandibular gland size  (IAGP)
enlarged brain ventricles  (IAGP)
enlarged lung  (IAGP)
eyelids open at birth  (IAGP)
failure of eyelid fusion  (IAGP)
impaired branching involved in terminal bronchiole morphogenesis  (IAGP)
increased wet-to-dry lung weight ratio  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
pulmonary hypoplasia  (IAGP)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
small lung saccule  (IAGP)
submandibular gland hypoplasia  (IAGP)
thick lung-associated mesenchyme  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7590749   PMID:8889548   PMID:9052991   PMID:9056636   PMID:10087299   PMID:10349636   PMID:10762365   PMID:10959417   PMID:11042159   PMID:11076861   PMID:11850179   PMID:11978849  
PMID:12477932   PMID:12520002   PMID:12568726   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15328020   PMID:15345747   PMID:15489334   PMID:15632069   PMID:15741177   PMID:15745951  
PMID:16141072   PMID:16141073   PMID:16458080   PMID:17178400   PMID:17553984   PMID:17904922   PMID:17967808   PMID:18023262   PMID:18287559   PMID:18324732   PMID:18335562   PMID:18554416  
PMID:18799693   PMID:19020026   PMID:19107796   PMID:19429788   PMID:19706729   PMID:19741146   PMID:19961580   PMID:20059953   PMID:20178747   PMID:20412781   PMID:20431063   PMID:20610746  
PMID:20685655   PMID:21267068   PMID:21270437   PMID:21513708   PMID:21677750   PMID:21764851   PMID:21873635   PMID:21931569   PMID:22235033   PMID:22365545   PMID:22886731   PMID:22923088  
PMID:23012479   PMID:23042737   PMID:23389444   PMID:23749646   PMID:24391734   PMID:24553933   PMID:24678731   PMID:24952961   PMID:25182747   PMID:25403566   PMID:25737280   PMID:25763778  
PMID:25960350   PMID:26021864   PMID:26071364   PMID:26084801   PMID:26212661   PMID:26677878   PMID:27133129   PMID:27178982   PMID:27373156   PMID:27374332   PMID:27545503   PMID:27613844  
PMID:27732850   PMID:27965439   PMID:28295292   PMID:28378742   PMID:28830981   PMID:28942923   PMID:29106906   PMID:29398364   PMID:29965871   PMID:30388402   PMID:30718509   PMID:30846445  
PMID:31073041   PMID:31128945   PMID:31138677   PMID:31257105   PMID:31569049   PMID:32068188   PMID:32080306   PMID:32166136   PMID:32393888   PMID:33004674   PMID:33346791   PMID:33554859  
PMID:33871356   PMID:34049878   PMID:34170322   PMID:34321999   PMID:34651294   PMID:34767545   PMID:34921112   PMID:35364055   PMID:35462405   PMID:36109497   PMID:36196585   PMID:36537580  
PMID:36596814   PMID:36690626   PMID:37365500   PMID:37963187   PMID:38366751   PMID:38722021  


Genomics

Comparative Map Data
Nfib
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39482,208,410 - 82,424,988 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl482,208,410 - 82,623,987 (-)EnsemblGRCm39 Ensembl
GRCm38482,290,173 - 82,506,751 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl482,290,173 - 82,705,750 (-)EnsemblGRCm38mm10GRCm38
MGSCv37481,936,077 - 82,151,212 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36481,766,962 - 81,976,354 (-)NCBIMGSCv36mm8
Celera480,824,138 - 81,039,259 (-)NCBICelera
Cytogenetic Map4C3NCBI
cM Map438.4NCBI
NFIB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38914,081,843 - 14,532,077 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl914,081,843 - 14,398,983 (-)EnsemblGRCh38hg38GRCh38
GRCh37914,081,842 - 14,532,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36914,071,847 - 14,303,945 (-)NCBINCBI36Build 36hg18NCBI36
Build 34914,077,372 - 14,303,719NCBI
Celera914,015,384 - 14,332,471 (-)NCBICelera
Cytogenetic Map9p23-p22.3NCBI
HuRef914,045,221 - 14,362,372 (-)NCBIHuRef
CHM1_1914,081,962 - 14,399,030 (-)NCBICHM1_1
T2T-CHM13v2.0914,091,330 - 14,541,744 (-)NCBIT2T-CHM13v2.0
Nfib
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85101,805,168 - 102,020,618 (-)NCBIGRCr8
mRatBN7.2596,759,208 - 96,974,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl596,764,653 - 96,975,479 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx599,136,963 - 99,352,302 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05100,938,651 - 101,153,626 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05100,947,847 - 101,163,159 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05100,436,343 - 100,647,962 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5100,439,082 - 100,647,727 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05104,464,121 - 104,676,709 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45101,184,253 - 101,409,907 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15101,189,483 - 101,283,030 (-)NCBI
Celera595,320,913 - 95,528,007 (-)NCBICelera
Cytogenetic Map5q31NCBI
Nfib
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543417,198,571 - 17,415,084 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543417,192,188 - 17,603,503 (-)NCBIChiLan1.0ChiLan1.0
NFIB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211110,000,191 - 110,450,298 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19110,006,138 - 110,456,242 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0913,923,516 - 14,376,264 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1914,432,239 - 14,664,424 (-)NCBIpanpan1.1PanPan1.1panPan2
NFIB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11134,573,136 - 35,010,319 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1134,579,431 - 34,901,322 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1133,281,491 - 33,523,124 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01135,477,680 - 35,719,587 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1135,483,618 - 35,719,219 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11134,182,236 - 34,423,934 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01133,974,417 - 34,216,067 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01134,631,192 - 34,872,773 (-)NCBIUU_Cfam_GSD_1.0
Nfib
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947149,310,349 - 149,730,717 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365397,769,413 - 7,985,316 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365397,763,036 - 8,185,001 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFIB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1208,175,194 - 208,421,602 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11208,182,397 - 208,427,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21231,957,992 - 232,197,794 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103219433
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11265,043,819 - 65,487,832 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1265,256,407 - 65,481,485 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603853,635,229 - 53,707,627 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nfib
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473618,377,624 - 18,586,424 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473618,372,418 - 18,586,390 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nfib
6089 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:8647
Count of miRNA genes:931
Interacting mature miRNAs:1332
Transcripts:ENSMUST00000050872, ENSMUST00000064770, ENSMUST00000107245, ENSMUST00000107246, ENSMUST00000107247, ENSMUST00000107248, ENSMUST00000122918, ENSMUST00000135024, ENSMUST00000140874, ENSMUST00000148982, ENSMUST00000152588, ENSMUST00000155821
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46671823798588237Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481213991115213991Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45447158988471589Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45447158988471589Mouse
26884406Huml3_mhumerus length 3, 10 week (mouse)475618237100157197Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46361952697619685Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
11532688Mh_mmodifier of hemostasis (mouse)44830477582304775Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
4142203Lyr_mlymphoma resistance (mouse)Not determined8075244588769188Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45010026284100408Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
12880404Embq1_memotional behavior QTL 1 (mouse)46575720395921546Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46422246098222460Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588510637Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)471982069105982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
12904738Idohtq_miris defect with ocular hypertension QTL (mouse)48075246793112991Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466888445100888588Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466757130100757258Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1301995Lprm1_mlymphoproliferation modifier 1 (mouse)Not determined45010026284100408Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined471982069105982216Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse

Markers in Region
AA986530  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38482,400,605 - 82,400,719UniSTSGRCm38
MGSCv37482,046,509 - 82,046,623UniSTSGRCm37
Celera480,934,448 - 80,934,562UniSTS
Cytogenetic Map4C4-C6UniSTS
Whitehead/MRC_RH41146.13UniSTS
Nfib  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37482,141,017 - 82,141,068UniSTSGRCm37
Celera481,029,063 - 81,029,114UniSTS
Cytogenetic Map4C4-C6UniSTS
cM Map438.6UniSTS
D9S2012  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38482,290,190 - 82,290,315UniSTSGRCm38
MGSCv37481,936,094 - 81,936,219UniSTSGRCm37
Celera480,824,155 - 80,824,280UniSTS
Cytogenetic Map4C4-C6UniSTS
Nfib  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38482,495,113 - 82,495,164UniSTSGRCm38
MGSCv37482,141,017 - 82,141,068UniSTSGRCm37
Celera481,029,063 - 81,029,114UniSTS
Cytogenetic Map4C4-C6UniSTS
cM Map438.6UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001113209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001113210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA500678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA510173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF111264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL592283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL773518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY035852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY035853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB626259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE862566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX324149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY454615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y07685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y07686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y07687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000050872   ⟹   ENSMUSP00000052863
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,208,410 - 82,423,545 (-)Ensembl
GRCm38.p6 Ensembl482,290,173 - 82,505,308 (-)Ensembl
Ensembl Acc Id: ENSMUST00000064770   ⟹   ENSMUSP00000067629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,208,413 - 82,423,545 (-)Ensembl
GRCm38.p6 Ensembl482,290,176 - 82,505,308 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107245   ⟹   ENSMUSP00000102865
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,208,410 - 82,424,007 (-)Ensembl
GRCm38.p6 Ensembl482,290,173 - 82,505,770 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107246   ⟹   ENSMUSP00000102866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,214,318 - 82,424,007 (-)Ensembl
GRCm38.p6 Ensembl482,296,081 - 82,505,770 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107247   ⟹   ENSMUSP00000102868
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,214,285 - 82,423,944 (-)Ensembl
GRCm38.p6 Ensembl482,296,048 - 82,505,707 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107248   ⟹   ENSMUSP00000102869
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,214,285 - 82,423,944 (-)Ensembl
GRCm38.p6 Ensembl482,296,048 - 82,505,707 (-)Ensembl
Ensembl Acc Id: ENSMUST00000122918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,245,062 - 82,423,547 (-)Ensembl
GRCm38.p6 Ensembl482,326,825 - 82,505,310 (-)Ensembl
Ensembl Acc Id: ENSMUST00000135024
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,414,221 - 82,424,016 (-)Ensembl
GRCm38.p6 Ensembl482,495,984 - 82,505,779 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140874
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,246,831 - 82,423,547 (-)Ensembl
GRCm38.p6 Ensembl482,328,594 - 82,505,310 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,271,289 - 82,424,001 (-)Ensembl
GRCm38.p6 Ensembl482,353,052 - 82,505,764 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152588
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,416,781 - 82,417,553 (-)Ensembl
GRCm38.p6 Ensembl482,498,544 - 82,499,316 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155821   ⟹   ENSMUSP00000123169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl482,416,558 - 82,623,987 (-)Ensembl
GRCm38.p6 Ensembl482,498,321 - 82,705,750 (-)Ensembl
RefSeq Acc Id: NM_001113209   ⟹   NP_001106680
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,424,016 (-)NCBI
GRCm38482,290,173 - 82,505,779 (-)NCBI
MGSCv37481,936,077 - 82,151,212 (-)RGD
Celera480,824,138 - 81,039,729 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001113210   ⟹   NP_001106681
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,424,016 (-)NCBI
GRCm38482,290,173 - 82,505,779 (-)NCBI
MGSCv37481,936,077 - 82,151,212 (-)RGD
Celera480,824,138 - 81,039,729 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001286127   ⟹   NP_001273056
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,424,016 (-)NCBI
GRCm38482,290,173 - 82,505,779 (-)NCBI
Celera480,824,138 - 81,039,729 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001286131   ⟹   NP_001273060
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,424,016 (-)NCBI
GRCm38482,290,173 - 82,505,779 (-)NCBI
Celera480,824,138 - 81,039,729 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008687   ⟹   NP_032713
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,424,016 (-)NCBI
GRCm38482,290,173 - 82,505,779 (-)NCBI
MGSCv37481,936,077 - 82,151,212 (-)RGD
Celera480,824,138 - 81,039,729 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006537653   ⟹   XP_006537716
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,422,947 (-)NCBI
GRCm38482,290,173 - 82,504,713 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006537654   ⟹   XP_006537717
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,424,988 (-)NCBI
GRCm38482,290,173 - 82,506,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320022   ⟹   XP_017175511
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,424,988 (-)NCBI
GRCm38482,296,730 - 82,506,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253304   ⟹   XP_030109164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,422,947 (-)NCBI
GRCm38482,290,173 - 82,504,711 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163812   ⟹   XP_036019705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,422,947 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163813   ⟹   XP_036019706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,422,947 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941830
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39482,208,410 - 82,424,988 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001106680 (Get FASTA)   NCBI Sequence Viewer  
  NP_001106681 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273056 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273060 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416488 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416489 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416490 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416491 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416492 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416493 (Get FASTA)   NCBI Sequence Viewer  
  NP_032713 (Get FASTA)   NCBI Sequence Viewer  
  XP_006537716 (Get FASTA)   NCBI Sequence Viewer  
  XP_006537717 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175511 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109164 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019705 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019706 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB49929 (Get FASTA)   NCBI Sequence Viewer  
  AAD39099 (Get FASTA)   NCBI Sequence Viewer  
  AAH14290 (Get FASTA)   NCBI Sequence Viewer  
  AAH62908 (Get FASTA)   NCBI Sequence Viewer  
  AAK62034 (Get FASTA)   NCBI Sequence Viewer  
  AAK62035 (Get FASTA)   NCBI Sequence Viewer  
  AUF42064 (Get FASTA)   NCBI Sequence Viewer  
  BAC34160 (Get FASTA)   NCBI Sequence Viewer  
  BAC35299 (Get FASTA)   NCBI Sequence Viewer  
  BAC38792 (Get FASTA)   NCBI Sequence Viewer  
  BAC39891 (Get FASTA)   NCBI Sequence Viewer  
  BAE27203 (Get FASTA)   NCBI Sequence Viewer  
  BAE28620 (Get FASTA)   NCBI Sequence Viewer  
  CAA68949 (Get FASTA)   NCBI Sequence Viewer  
  CAA68950 (Get FASTA)   NCBI Sequence Viewer  
  CAA68951 (Get FASTA)   NCBI Sequence Viewer  
  CAM22758 (Get FASTA)   NCBI Sequence Viewer  
  CAM22759 (Get FASTA)   NCBI Sequence Viewer  
  CAM22760 (Get FASTA)   NCBI Sequence Viewer  
  CAM22761 (Get FASTA)   NCBI Sequence Viewer  
  CAM22762 (Get FASTA)   NCBI Sequence Viewer  
  EDL31035 (Get FASTA)   NCBI Sequence Viewer  
  EDL31036 (Get FASTA)   NCBI Sequence Viewer  
  EDL31037 (Get FASTA)   NCBI Sequence Viewer  
  EDL31038 (Get FASTA)   NCBI Sequence Viewer  
  EDL31039 (Get FASTA)   NCBI Sequence Viewer  
  EDL31040 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000052863
  ENSMUSP00000052863.9
  ENSMUSP00000067629
  ENSMUSP00000067629.3
  ENSMUSP00000102865
  ENSMUSP00000102865.3
  ENSMUSP00000102866
  ENSMUSP00000102866.2
  ENSMUSP00000102868
  ENSMUSP00000102868.2
  ENSMUSP00000102869.2
  ENSMUSP00000123169.2
GenBank Protein P97863 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_032713   ⟸   NM_008687
- Peptide Label: isoform 3
- UniProtKB: Q6GSP7 (UniProtKB/TrEMBL),   Q8C434 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001106680   ⟸   NM_001113209
- Peptide Label: isoform 1
- UniProtKB: P70254 (UniProtKB/Swiss-Prot),   P70253 (UniProtKB/Swiss-Prot),   P70252 (UniProtKB/Swiss-Prot),   Q9R1G4 (UniProtKB/Swiss-Prot),   P97863 (UniProtKB/Swiss-Prot),   A2BG77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001106681   ⟸   NM_001113210
- Peptide Label: isoform 2
- UniProtKB: A2BG75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273060   ⟸   NM_001286131
- Peptide Label: isoform 5
- UniProtKB: A2BG76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273056   ⟸   NM_001286127
- Peptide Label: isoform 4
- UniProtKB: I7HIP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006537716   ⟸   XM_006537653
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006537717   ⟸   XM_006537654
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017175511   ⟸   XM_017320022
- Peptide Label: isoform X5
- UniProtKB: Q8C434 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030109164   ⟸   XM_030253304
- Peptide Label: isoform X4
Ensembl Acc Id: ENSMUSP00000052863   ⟸   ENSMUST00000050872
Ensembl Acc Id: ENSMUSP00000102866   ⟸   ENSMUST00000107246
Ensembl Acc Id: ENSMUSP00000102865   ⟸   ENSMUST00000107245
Ensembl Acc Id: ENSMUSP00000102869   ⟸   ENSMUST00000107248
Ensembl Acc Id: ENSMUSP00000102868   ⟸   ENSMUST00000107247
Ensembl Acc Id: ENSMUSP00000067629   ⟸   ENSMUST00000064770
Ensembl Acc Id: ENSMUSP00000123169   ⟸   ENSMUST00000155821
RefSeq Acc Id: XP_036019706   ⟸   XM_036163813
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036019705   ⟸   XM_036163812
- Peptide Label: isoform X3
- UniProtKB: I7HIP8 (UniProtKB/TrEMBL)
Protein Domains
CTF/NF-I

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97863-F1-model_v2 AlphaFold P97863 1-570 view protein structure

Promoters
RGD ID:6835745
Promoter ID:MM_KWN:38189
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:UC008TJZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36481,937,826 - 81,941,577 (-)MPROMDB
RGD ID:6835746
Promoter ID:MM_KWN:38193
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver
Transcripts:OTTMUST00000021178,   UC008TKA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36482,144,196 - 82,145,677 (-)MPROMDB
RGD ID:6835747
Promoter ID:MM_KWN:38194
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000075543,   ENSMUST00000107243,   ENSMUST00000107247,   ENSMUST00000107248,   OTTMUST00000000950,   OTTMUST00000021174,   OTTMUST00000021175,   OTTMUST00000021177,   OTTMUST00000072495,   UC008TKD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36482,150,771 - 82,152,532 (-)MPROMDB
RGD ID:6883728
Promoter ID:EPDNEW_M5315
Type:initiation region
Name:Nfib_2
Description:Mus musculus nuclear factor I/B , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5316  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38482,505,310 - 82,505,370EPDNEW
RGD ID:6883730
Promoter ID:EPDNEW_M5316
Type:initiation region
Name:Nfib_1
Description:Mus musculus nuclear factor I/B , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5315  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38482,505,779 - 82,505,839EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:103188 AgrOrtholog
Ensembl Genes ENSMUSG00000008575 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000050872 ENTREZGENE
  ENSMUST00000050872.15 UniProtKB/Swiss-Prot
  ENSMUST00000064770 ENTREZGENE
  ENSMUST00000064770.9 UniProtKB/Swiss-Prot
  ENSMUST00000107245 ENTREZGENE
  ENSMUST00000107245.9 UniProtKB/TrEMBL
  ENSMUST00000107246 ENTREZGENE
  ENSMUST00000107246.2 UniProtKB/TrEMBL
  ENSMUST00000107247 ENTREZGENE
  ENSMUST00000107247.8 UniProtKB/TrEMBL
  ENSMUST00000107248.8 UniProtKB/TrEMBL
  ENSMUST00000155821.2 UniProtKB/TrEMBL
InterPro CTF/NFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTF/NFI_DNA-bd-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTF/NFI_DNA-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTF/NFI_DNA-bd_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAD_homology1_Dwarfin-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18028 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:103188 ENTREZGENE
NCBI Gene 18028 ENTREZGENE
PANTHER NUCLEAR FACTOR 1 B-TYPE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11492 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CTF_NFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NfI_DNAbd_pre-N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nfib PhenoGen
PROSITE CTF_NFI_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTF_NFI_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GX74_MOUSE UniProtKB/TrEMBL
  A0A3Q8CJ53_MOUSE UniProtKB/TrEMBL
  A2ADI3_MOUSE UniProtKB/TrEMBL
  A2BG75 ENTREZGENE, UniProtKB/TrEMBL
  A2BG76 ENTREZGENE, UniProtKB/TrEMBL
  A2BG77 ENTREZGENE, UniProtKB/TrEMBL
  I7HIP8 ENTREZGENE, UniProtKB/TrEMBL
  NFIB_MOUSE UniProtKB/Swiss-Prot
  P70252 ENTREZGENE
  P70253 ENTREZGENE
  P70254 ENTREZGENE
  P97863 ENTREZGENE
  Q3UFE1_MOUSE UniProtKB/TrEMBL
  Q6GSP7 ENTREZGENE, UniProtKB/TrEMBL
  Q8C434 ENTREZGENE, UniProtKB/TrEMBL
  Q8C6T9_MOUSE UniProtKB/TrEMBL
  Q8C7G6_MOUSE UniProtKB/TrEMBL
  Q9R1G4 ENTREZGENE
UniProt Secondary A0A0A6YYS4 UniProtKB/TrEMBL
  A0A0K0K190 UniProtKB/TrEMBL
  J3JS90 UniProtKB/TrEMBL
  P70252 UniProtKB/Swiss-Prot
  P70253 UniProtKB/Swiss-Prot
  P70254 UniProtKB/Swiss-Prot
  Q9R1G4 UniProtKB/Swiss-Prot