Sart1 (squamous cell carcinoma antigen recognized by T cells 1) - Rat Genome Database

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Gene: Sart1 (squamous cell carcinoma antigen recognized by T cells 1) Mus musculus
Analyze
Symbol: Sart1
Name: squamous cell carcinoma antigen recognized by T cells 1
RGD ID: 62223
MGI Page MGI
Description: Predicted to be involved in mRNA cis splicing, via spliceosome; maturation of 5S rRNA; and positive regulation of cytotoxic T cell differentiation. Predicted to be located in Cajal body; Golgi apparatus; and nuclear speck. Predicted to be part of U2-type precatalytic spliceosome; U4/U6 x U5 tri-snRNP complex; and catalytic step 2 spliceosome. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; hemolymphoid system; and integumental system. Orthologous to human SART1 (spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypoxia-associated factor; mSART-1; SART-1; squamous cell carcinoma antigen recognized by T-cells 1; U4/U6.U5 tri-snRNP-associated protein 1; U5-110K
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,427,551 - 5,438,731 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,427,551 - 5,438,731 (-)EnsemblGRCm39 Ensembl
GRCm38195,377,523 - 5,388,703 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,377,523 - 5,388,703 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,377,523 - 5,388,703 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,380,060 - 5,388,703 (-)NCBIMGSCv36mm8
Celera195,249,908 - 5,261,089 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-amino-2,6-dinitrotoluene  (ISO)
acrylamide  (ISO)
Aflatoxin B2 alpha  (ISO)
allethrin  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
cocaine  (ISO)
copper(II) chloride  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
dieldrin  (ISO)
disodium selenite  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
ionomycin  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
methylparaben  (ISO)
nickel dichloride  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pyrethrins  (ISO)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
thiram  (ISO)
titanium dioxide  (EXP)
triphenyl phosphate  (ISO)
tungsten  (EXP)
valproic acid  (EXP)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Sequence analysis of genes encoding rodent homologues of the human tumor-rejection antigen SART-1. Gotoh M, etal., Jpn J Cancer Res 1998 Aug;89(8):849-54.
2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10887110   PMID:11042159   PMID:11076861   PMID:11350945   PMID:11410364   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16859702  
PMID:18287559   PMID:20059953   PMID:20412781   PMID:21267068   PMID:21873635   PMID:24194600   PMID:24457600   PMID:26496610   PMID:26584622   PMID:26799785   PMID:28671696   PMID:32554809  
PMID:32581705   PMID:37253089   PMID:38355793  


Genomics

Comparative Map Data
Sart1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,427,551 - 5,438,731 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,427,551 - 5,438,731 (-)EnsemblGRCm39 Ensembl
GRCm38195,377,523 - 5,388,703 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,377,523 - 5,388,703 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,377,523 - 5,388,703 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,380,060 - 5,388,703 (-)NCBIMGSCv36mm8
Celera195,249,908 - 5,261,089 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.31NCBI
SART1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,961,734 - 65,980,137 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,961,728 - 65,980,137 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,729,205 - 65,747,608 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,485,736 - 65,504,183 (+)NCBINCBI36Build 36hg18NCBI36
Build 341165,485,775 - 65,504,183NCBI
Celera1163,052,947 - 63,072,024 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1162,055,564 - 62,073,712 (+)NCBIHuRef
CHM1_11165,613,581 - 65,631,741 (+)NCBICHM1_1
T2T-CHM13v2.01165,954,815 - 65,974,269 (+)NCBIT2T-CHM13v2.0
Sart1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,119,824 - 212,128,517 (-)NCBIGRCr8
mRatBN7.21202,690,472 - 202,699,136 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,690,459 - 202,699,136 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,043,120 - 211,051,770 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,135,893 - 218,144,555 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,826,942 - 210,835,604 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,762,496 - 220,771,158 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,762,349 - 220,771,181 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,691,827 - 227,700,489 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,026,619 - 208,035,281 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,180,071 - 208,188,734 (-)NCBI
Celera1200,225,786 - 200,234,448 (-)NCBICelera
Cytogenetic Map1q43NCBI
Sart1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,360,641 - 19,371,105 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,360,641 - 19,370,623 (-)NCBIChiLan1.0ChiLan1.0
SART1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,194,567 - 67,211,687 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,236,685 - 68,254,507 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,326,262 - 61,343,475 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,654,470 - 64,670,720 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,654,470 - 64,670,720 (+)Ensemblpanpan1.1panPan2
SART1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,297,419 - 51,313,804 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,297,419 - 51,313,793 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,905,958 - 49,922,359 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,335,738 - 52,352,155 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,335,740 - 52,352,138 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,435,710 - 51,452,108 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,009,941 - 51,026,329 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,799,743 - 51,816,162 (-)NCBIUU_Cfam_GSD_1.0
Sart1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,135,211 - 7,145,708 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,577,480 - 3,588,706 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,577,552 - 3,588,825 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SART1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,354,908 - 6,373,272 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,355,690 - 6,373,342 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,459,382 - 5,477,018 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SART1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,279,821 - 8,296,282 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,275,123 - 8,296,245 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,564,949 - 105,582,326 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sart1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,456,890 - 20,467,641 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,456,951 - 20,466,994 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sart1
286 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1041
Count of miRNA genes:571
Interacting mature miRNAs:685
Transcripts:ENSMUST00000044207
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142302Nstr1_mnerve sheath tumor resistance QTL 1 (mouse)Not determined19122371338Mouse
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
25394536Skmw86_mskeletal muscle weight 86, TA (mouse)1950648178957825Mouse
4142161Drinksac2_mdrink saccharin 2 (mouse)Not determined120695286Mouse
1357819Tgct2_mtesticular germ cell tumor 2 (mouse)Not determined19332855120539663Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300776Lfp3_mlong free running period 3 (mouse)Not determined19120328703Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse

Markers in Region
MARC_26072-26073:1032454189:5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38195,380,472 - 5,381,070UniSTSGRCm38
MGSCv37195,380,472 - 5,381,070UniSTSGRCm37
Celera195,252,857 - 5,253,455UniSTS
Cytogenetic Map19AUniSTS


Sequence


Ensembl Acc Id: ENSMUST00000044207   ⟹   ENSMUSP00000047397
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,427,551 - 5,438,731 (-)Ensembl
GRCm38.p6 Ensembl195,377,523 - 5,388,703 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235654   ⟹   ENSMUSP00000157615
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,434,741 - 5,438,043 (-)Ensembl
GRCm38.p6 Ensembl195,384,713 - 5,388,015 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,430,087 - 5,430,530 (-)Ensembl
GRCm38.p6 Ensembl195,380,059 - 5,380,502 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,435,500 - 5,438,615 (-)Ensembl
GRCm38.p6 Ensembl195,385,472 - 5,388,587 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236511
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,430,129 - 5,431,348 (-)Ensembl
GRCm38.p6 Ensembl195,380,101 - 5,381,320 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl195,432,517 - 5,433,274 (-)Ensembl
GRCm38.p6 Ensembl195,382,489 - 5,383,246 (-)Ensembl
RefSeq Acc Id: NM_016882   ⟹   NP_058578
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39195,427,551 - 5,438,731 (-)NCBI
GRCm38195,377,523 - 5,388,703 (-)NCBI
MGSCv37195,377,523 - 5,388,703 (-)RGD
Celera195,249,908 - 5,261,089 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030250798   ⟹   XP_030106658
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39195,427,556 - 5,438,713 (-)NCBI
GRCm38195,377,528 - 5,388,678 (-)NCBI
Sequence:
RefSeq Acc Id: NP_058578   ⟸   NM_016882
- UniProtKB: Q9R1I9 (UniProtKB/Swiss-Prot),   Q8K155 (UniProtKB/Swiss-Prot),   Q9R270 (UniProtKB/Swiss-Prot),   Q9Z315 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030106658   ⟸   XM_030250798
- Peptide Label: isoform X1
Ensembl Acc Id: ENSMUSP00000157615   ⟸   ENSMUST00000235654
Ensembl Acc Id: ENSMUSP00000047397   ⟸   ENSMUST00000044207

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z315-F1-model_v2 AlphaFold Q9Z315 1-806 view protein structure

Promoters
RGD ID:6847592
Promoter ID:MM_ACW:25840
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:SART1.GSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36195,380,076 - 5,380,576 (-)MPROMDB
RGD ID:6830382
Promoter ID:MM_KWN:26071
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3
Transcripts:NM_016882
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36195,388,446 - 5,388,946 (-)MPROMDB
RGD ID:13678512
Promoter ID:EPDNEW_M23405
Type:initiation region
Name:Sart1_1
Description:Mus musculus squamous cell carcinoma antigen recognized by Tcells 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38195,388,677 - 5,388,737EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1309453 AgrOrtholog
Ensembl Genes ENSMUSG00000039148 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044207 ENTREZGENE
  ENSMUST00000044207.5 UniProtKB/Swiss-Prot
  ENSMUST00000235654.2 UniProtKB/TrEMBL
InterPro HIND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNU66/SART1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20227 UniProtKB/Swiss-Prot
MGD MGI:1309453 ENTREZGENE
NCBI Gene 20227 ENTREZGENE
PANTHER PTHR14152 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  U4/U6.U5 TRI-SNRNP-ASSOCIATED PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HIND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SART-1 UniProtKB/Swiss-Prot
PhenoGen Sart1 PhenoGen
UniProt A0A494B9E9_MOUSE UniProtKB/TrEMBL
  Q8K155 ENTREZGENE
  Q9R1I9 ENTREZGENE
  Q9R270 ENTREZGENE
  Q9Z315 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8K155 UniProtKB/Swiss-Prot
  Q9R1I9 UniProtKB/Swiss-Prot
  Q9R270 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-02-07 Sart1  squamous cell carcinoma antigen recognized by T cells 1  Sart1  squamous cell carcinoma antigen recognized by T-cells 1  Symbol and/or name change 5135510 APPROVED