Kctd1 (potassium channel tetramerization domain containing 1) - Rat Genome Database

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Gene: Kctd1 (potassium channel tetramerization domain containing 1) Rattus norvegicus
Analyze
Symbol: Kctd1
Name: potassium channel tetramerization domain containing 1
RGD ID: 621566
Description: Predicted to enable identical protein binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be located in several cellular components, including centriolar satellite; intercellular bridge; and nuclear lumen. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in scalp-ear-nipple syndrome. Orthologous to human KCTD1 (potassium channel tetramerization domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BTB/POZ domain-containing protein KCTD1; LOC103694168; potassium channel tetramerisation domain containing 1; uncharacterized LOC103694168; Vad; Vad5; vitamin A-deficient testicular protein 5; vitamin A-deficient testicular protein 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2186,122,390 - 6,316,434 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl186,122,390 - 6,317,393 (-)Ensembl
Rnor_6.0186,374,778 - 6,474,990 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,374,778 - 6,474,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,336,572 - 6,433,360 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,225,049 - 6,324,832 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1186,225,886 - 6,230,085 (-)NCBI
Celera186,151,583 - 6,246,756 (-)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriolar satellite  (IEA,ISO)
cytosol  (IEA,ISO)
intercellular bridge  (IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12878178   PMID:14701905   PMID:15057822   PMID:19115315   PMID:25416956   PMID:27152988  


Genomics

Comparative Map Data
Kctd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2186,122,390 - 6,316,434 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl186,122,390 - 6,317,393 (-)Ensembl
Rnor_6.0186,374,778 - 6,474,990 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,374,778 - 6,474,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,336,572 - 6,433,360 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,225,049 - 6,324,832 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1186,225,886 - 6,230,085 (-)NCBI
Celera186,151,583 - 6,246,756 (-)NCBICelera
Cytogenetic Map18p13NCBI
KCTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381826,454,910 - 26,657,473 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1826,454,910 - 26,657,401 (-)EnsemblGRCh38hg38GRCh38
GRCh371824,034,874 - 24,237,437 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361822,288,872 - 22,474,306 (-)NCBINCBI36hg18NCBI36
Celera1820,845,489 - 21,030,918 (-)NCBI
Cytogenetic Map18q11.2NCBI
HuRef1820,884,642 - 21,087,047 (-)NCBIHuRef
CHM1_11823,962,322 - 24,164,829 (-)NCBICHM1_1
T2T-CHM13v2.01826,649,034 - 26,851,482 (-)NCBI
Kctd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391815,101,742 - 15,284,503 (-)NCBIGRCm39mm39
GRCm39 Ensembl1815,101,742 - 15,284,503 (-)Ensembl
GRCm381814,968,685 - 15,151,446 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1814,968,685 - 15,151,446 (-)EnsemblGRCm38mm10GRCm38
MGSCv371815,127,194 - 15,309,955 (-)NCBIGRCm37mm9NCBIm37
MGSCv361815,111,587 - 15,294,464 (-)NCBImm8
Celera1815,190,943 - 15,377,226 (-)NCBICelera
Cytogenetic Map18A1NCBI
Kctd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540214,474,259 - 14,670,329 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540214,478,702 - 14,573,154 (-)NCBIChiLan1.0ChiLan1.0
KCTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11823,317,307 - 23,519,195 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01819,711,846 - 19,914,897 (-)NCBIMhudiblu_PPA_v0panPan3
KCTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1762,119,658 - 62,214,365 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl762,118,600 - 62,213,593 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha761,464,661 - 61,648,487 (+)NCBI
ROS_Cfam_1.0762,079,891 - 62,263,653 (+)NCBI
ROS_Cfam_1.0 Ensembl762,169,268 - 62,263,633 (+)Ensembl
UMICH_Zoey_3.1761,752,645 - 61,936,218 (+)NCBI
UNSW_CanFamBas_1.0761,854,535 - 61,949,020 (+)NCBI
UU_Cfam_GSD_1.0762,067,915 - 62,251,809 (+)NCBI
Kctd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494458,045,310 - 58,233,851 (+)NCBI
SpeTri2.0NW_0049365505,581,982 - 5,771,090 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6111,048,202 - 111,148,703 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16111,048,193 - 111,237,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26104,006,793 - 104,192,833 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11853,933,015 - 54,132,849 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1854,039,500 - 54,133,549 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605028,660,787 - 28,863,284 (+)NCBIVero_WHO_p1.0
Kctd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247705,775,458 - 5,968,699 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247705,775,317 - 5,967,929 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D18Rat134  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,222,839 - 6,223,031 (+)MAPPERmRatBN7.2
Rnor_6.0186,480,269 - 6,480,460NCBIRnor6.0
Rnor_5.0186,438,639 - 6,438,830UniSTSRnor5.0
RGSC_v3.4186,330,094 - 6,330,671RGDRGSC3.4
RGSC_v3.4186,330,111 - 6,330,302UniSTSRGSC3.4
RGSC_v3.1186,330,104 - 6,330,671RGD
Celera186,252,035 - 6,252,226UniSTS
RH 3.4 Map1867.8RGD
RH 3.4 Map1867.8UniSTS
RH 2.0 Map18805.1RGD
SHRSP x BN Map182.44RGD
Cytogenetic Map18p13UniSTS
D18Got5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,292,060 - 6,292,213 (+)MAPPERmRatBN7.2
Rnor_6.0186,552,532 - 6,552,684NCBIRnor6.0
Rnor_5.0186,509,066 - 6,509,218UniSTSRnor5.0
RGSC_v3.4186,399,497 - 6,399,651RGDRGSC3.4
RGSC_v3.4186,399,498 - 6,399,651UniSTSRGSC3.4
RGSC_v3.1186,399,498 - 6,399,651RGD
Celera186,320,909 - 6,321,062UniSTS
RH 3.4 Map180.0UniSTS
RH 3.4 Map180.0RGD
RH 2.0 Map18826.4RGD
Cytogenetic Map18p13UniSTS
D18Chm14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,135,447 - 6,135,669 (+)MAPPERmRatBN7.2
Rnor_6.0186,387,873 - 6,388,091NCBIRnor6.0
Rnor_5.0186,349,667 - 6,349,885UniSTSRnor5.0
RGSC_v3.4186,238,102 - 6,238,320UniSTSRGSC3.4
Celera186,164,608 - 6,164,826UniSTS
Cytogenetic Map18p13UniSTS
RH133603  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,224,514 - 6,224,718 (+)MAPPERmRatBN7.2
Rnor_6.0186,481,944 - 6,482,147NCBIRnor6.0
Rnor_5.0186,440,314 - 6,440,517UniSTSRnor5.0
RGSC_v3.4186,331,786 - 6,331,989UniSTSRGSC3.4
Celera186,253,710 - 6,253,913UniSTS
RH 3.4 Map1865.83UniSTS
Cytogenetic Map18p13UniSTS
RH144274  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,222,111 - 6,222,303 (+)MAPPERmRatBN7.2
Rnor_6.0186,479,541 - 6,479,732NCBIRnor6.0
Rnor_5.0186,437,911 - 6,438,102UniSTSRnor5.0
RGSC_v3.4186,329,383 - 6,329,574UniSTSRGSC3.4
Celera186,251,307 - 6,251,498UniSTS
RH 3.4 Map1878.2UniSTS
Cytogenetic Map18p13UniSTS
AI029850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,123,157 - 6,123,366 (+)MAPPERmRatBN7.2
Rnor_6.0186,375,546 - 6,375,754NCBIRnor6.0
Rnor_5.0186,337,340 - 6,337,548UniSTSRnor5.0
RGSC_v3.4186,225,817 - 6,226,025UniSTSRGSC3.4
Celera186,152,351 - 6,152,559UniSTS
RH 3.4 Map1842.2UniSTS
Cytogenetic Map18p13UniSTS
AA943825  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,283,095 - 6,283,245 (+)MAPPERmRatBN7.2
Rnor_6.0186,543,563 - 6,543,712NCBIRnor6.0
Rnor_5.0186,500,097 - 6,500,246UniSTSRnor5.0
RGSC_v3.4186,390,529 - 6,390,678UniSTSRGSC3.4
Celera186,311,940 - 6,312,089UniSTS
RH 3.4 Map1879.0UniSTS
Cytogenetic Map18p13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:21
Count of miRNA genes:20
Interacting mature miRNAs:21
Transcripts:ENSRNOT00000061504
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 8 1 70 30 23
Low 3 42 21 13 18 13 8 11 4 5 18 11 8
Below cutoff 28 28 28

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000061504   ⟹   ENSRNOP00000058222
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,122,390 - 6,317,393 (-)Ensembl
Rnor_6.0 Ensembl186,374,778 - 6,474,990 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110896   ⟹   ENSRNOP00000092708
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,122,390 - 6,220,278 (-)Ensembl
RefSeq Acc Id: NM_001100516   ⟹   NP_001093986
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2186,122,390 - 6,217,561 (-)NCBI
Rnor_6.0186,374,778 - 6,474,990 (-)NCBI
Rnor_5.0186,336,572 - 6,433,360 (-)NCBI
Celera186,151,583 - 6,246,756 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096741   ⟹   XP_038952669
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2186,122,391 - 6,316,434 (-)NCBI
RefSeq Acc Id: XM_039096742   ⟹   XP_038952670
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2186,122,391 - 6,219,289 (-)NCBI
RefSeq Acc Id: XM_039096743   ⟹   XP_038952671
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2186,122,391 - 6,240,549 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001093986   ⟸   NM_001100516
- UniProtKB: A0A140TAI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000058222   ⟸   ENSRNOT00000061504
RefSeq Acc Id: XP_038952669   ⟸   XM_039096741
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038952671   ⟸   XM_039096743
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038952670   ⟸   XM_039096742
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000092708   ⟸   ENSRNOT00000110896
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R4G8-F1-model_v2 AlphaFold Q8R4G8 1-257 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700646
Promoter ID:EPDNEW_R11170
Type:single initiation site
Name:Kctd1_1
Description:potassium channel tetramerization domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0186,475,004 - 6,475,064EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621566 AgrOrtholog
BioCyc Gene G2FUF-8297 BioCyc
Ensembl Genes ENSRNOG00000016467 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000058222 ENTREZGENE
  ENSRNOP00000058222.5 UniProtKB/TrEMBL
  ENSRNOP00000092708 ENTREZGENE
  ENSRNOP00000092708.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061504 ENTREZGENE
  ENSRNOT00000061504.5 UniProtKB/TrEMBL
  ENSRNOT00000110896 ENTREZGENE
  ENSRNOT00000110896.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.710.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF3504 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:291772 UniProtKB/TrEMBL
NCBI Gene 291772 ENTREZGENE
Pfam BTB_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF3504 UniProtKB/TrEMBL
PhenoGen Kctd1 PhenoGen
SMART BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140TAI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJX3_RAT UniProtKB/TrEMBL
  KCTD1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Kctd1  potassium channel tetramerization domain containing 1  LOC103694168  uncharacterized LOC103694168  Data Merged 737654 PROVISIONAL
2014-08-25 LOC103694168  uncharacterized LOC103694168      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-07-09 Kctd1  potassium channel tetramerization domain containing 1  Kctd1  potassium channel tetramerisation domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Kctd1  potassium channel tetramerisation domain containing 1  Vad5  vitamin A-deficient testicular protein 5  Symbol and Name updated 1299863 APPROVED
2005-07-08 Vad5  vitamin A-deficient testicular protein 5  Vad    Symbol updated 1299863 APPROVED
2002-08-07 Vad  vitamin A-deficient testicular protein 5      Symbol and Name status set to provisional 70820 PROVISIONAL