Taf2 (TATA-box binding protein associated factor 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Taf2 (TATA-box binding protein associated factor 2) Rattus norvegicus
Analyze
Symbol: Taf2
Name: TATA-box binding protein associated factor 2
RGD ID: 621487
Description: Predicted to enable chromatin binding activity and transcription cis-regulatory region binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Involved in response to paraquat. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex and transcription factor TFTC complex. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 40. Orthologous to human TAF2 (TATA-box binding protein associated factor 2); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor; TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150 kD; TAF2 RNA polymerase II, TATA box binding protein-associated factor, 150 kD; TAFIIB; transcription initiation factor TFIID subunit 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8788,312,374 - 88,369,399 (-)NCBIGRCr8
mRatBN7.2786,422,613 - 86,479,616 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl786,422,613 - 86,479,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx788,306,193 - 88,362,784 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0790,507,402 - 90,563,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0790,312,868 - 90,369,459 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0794,698,987 - 94,755,924 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl794,698,987 - 94,755,924 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0795,339,750 - 95,396,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4791,542,400 - 91,599,759 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1791,589,861 - 91,597,921 (-)NCBI
Celera783,216,946 - 83,273,562 (-)NCBICelera
Cytogenetic Map7q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Structural bioinformatics of the general transcription factor TFIID. Malkowska M, etal., Biochimie. 2013 Apr;95(4):680-91. doi: 10.1016/j.biochi.2012.10.024. Epub 2012 Nov 9.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Paraquat-induced gene expression in rat lung tissues using a differential display reverse transcription-polymerase chain reaction. Tomita M, etal., Arch Toxicol 2002 Sep;76(9):530-7.
Additional References at PubMed
PMID:9418870   PMID:9774672   PMID:10373431   PMID:10409744   PMID:12477932   PMID:14580349   PMID:27007846  


Genomics

Comparative Map Data
Taf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8788,312,374 - 88,369,399 (-)NCBIGRCr8
mRatBN7.2786,422,613 - 86,479,616 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl786,422,613 - 86,479,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx788,306,193 - 88,362,784 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0790,507,402 - 90,563,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0790,312,868 - 90,369,459 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0794,698,987 - 94,755,924 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl794,698,987 - 94,755,924 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0795,339,750 - 95,396,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4791,542,400 - 91,599,759 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1791,589,861 - 91,597,921 (-)NCBI
Celera783,216,946 - 83,273,562 (-)NCBICelera
Cytogenetic Map7q32NCBI
TAF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388119,730,774 - 119,832,841 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8119,730,774 - 119,832,863 (-)EnsemblGRCh38hg38GRCh38
GRCh378120,743,014 - 120,845,081 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368120,812,195 - 120,914,255 (-)NCBINCBI36Build 36hg18NCBI36
Build 348120,812,195 - 120,914,255NCBI
Celera8116,932,070 - 117,034,135 (-)NCBICelera
Cytogenetic Map8q24.12NCBI
HuRef8116,063,646 - 116,165,955 (-)NCBIHuRef
CHM1_18120,783,731 - 120,885,905 (-)NCBICHM1_1
T2T-CHM13v2.08120,859,650 - 120,961,708 (-)NCBIT2T-CHM13v2.0
Taf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391554,878,525 - 54,935,580 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1554,878,527 - 54,935,548 (-)EnsemblGRCm39 Ensembl
GRCm381555,015,129 - 55,072,187 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1555,015,131 - 55,072,152 (-)EnsemblGRCm38mm10GRCm38
MGSCv371554,846,684 - 54,903,707 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361554,845,212 - 54,902,235 (-)NCBIMGSCv36mm8
Celera1556,554,123 - 56,610,674 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1521.96NCBI
Taf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541725,457,615 - 25,515,923 (-)NCBIChiLan1.0ChiLan1.0
TAF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27137,156,881 - 137,259,288 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18112,668,784 - 112,770,380 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08116,421,520 - 116,523,138 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18119,170,327 - 119,271,405 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8119,170,327 - 119,271,405 (-)Ensemblpanpan1.1panPan2
TAF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11318,724,408 - 18,824,025 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1318,729,234 - 18,823,979 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1318,732,315 - 18,837,051 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01319,053,514 - 19,153,172 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1319,057,530 - 19,153,414 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11318,780,662 - 18,880,287 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01318,879,633 - 18,979,783 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01319,112,087 - 19,210,511 (-)NCBIUU_Cfam_GSD_1.0
Taf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530319,445,742 - 19,525,705 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647026,871,847 - 26,951,806 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647026,871,865 - 26,951,804 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl419,180,320 - 19,267,071 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1419,180,215 - 19,267,416 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2420,215,503 - 20,284,755 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18114,291,325 - 114,395,189 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8114,290,866 - 114,395,537 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603925,892,245 - 25,996,589 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476317,806,280 - 17,907,547 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476317,801,835 - 17,907,538 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Taf2
323 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:852
Count of miRNA genes:327
Interacting mature miRNAs:423
Transcripts:ENSRNOT00000040836
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78022129994811326Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78022129993595843Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat

Markers in Region
RH142793  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2786,422,672 - 86,422,802 (+)MAPPERmRatBN7.2
Rnor_6.0794,699,047 - 94,699,176NCBIRnor6.0
Rnor_5.0795,339,810 - 95,339,939UniSTSRnor5.0
RGSC_v3.4791,542,460 - 91,542,589UniSTSRGSC3.4
Celera783,217,006 - 83,217,135UniSTS
RH 3.4 Map7600.2UniSTS
Cytogenetic Map7q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000040836   ⟹   ENSRNOP00000050750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl786,422,613 - 86,479,616 (-)Ensembl
Rnor_6.0 Ensembl794,698,987 - 94,755,924 (-)Ensembl
RefSeq Acc Id: NM_133319   ⟹   NP_579853
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8788,312,374 - 88,369,377 (-)NCBI
mRatBN7.2786,422,613 - 86,479,616 (-)NCBI
Rnor_6.0794,698,987 - 94,755,924 (-)NCBI
Rnor_5.0795,339,750 - 95,396,754 (-)NCBI
RGSC_v3.4791,542,400 - 91,599,759 (-)RGD
Celera783,216,946 - 83,273,562 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241644   ⟹   XP_006241706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8788,312,374 - 88,362,511 (-)NCBI
mRatBN7.2786,422,618 - 86,472,750 (-)NCBI
Rnor_6.0794,698,987 - 94,749,023 (-)NCBI
Rnor_5.0795,339,750 - 95,396,754 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063262942   ⟹   XP_063119012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8788,312,374 - 88,369,398 (-)NCBI
RefSeq Acc Id: XR_010052933
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8788,328,176 - 88,369,399 (-)NCBI
RefSeq Acc Id: NP_579853   ⟸   NM_133319
- UniProtKB: F1LNY6 (UniProtKB/TrEMBL),   A6HRG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241706   ⟸   XM_006241644
- Peptide Label: isoform X2
- UniProtKB: A6HRG7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000050750   ⟸   ENSRNOT00000040836
RefSeq Acc Id: XP_063119012   ⟸   XM_063262942
- Peptide Label: isoform X1
- UniProtKB: F1LNY6 (UniProtKB/TrEMBL),   A6HRG7 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LNY6-F1-model_v2 AlphaFold F1LNY6 1-1200 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695332
Promoter ID:EPDNEW_R5857
Type:multiple initiation site
Name:Taf2_1
Description:TATA-box binding protein associated factor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0794,755,935 - 94,755,995EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621487 AgrOrtholog
BioCyc Gene G2FUF-33384 BioCyc
Ensembl Genes ENSRNOG00000034022 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040836 ENTREZGENE
  ENSRNOT00000040836.4 UniProtKB/TrEMBL
Gene3D-CATH 1.10.390.10 UniProtKB/TrEMBL
  2.60.40.1730 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7311358 IMAGE-MGC_LOAD
  IMAGE:7929644 IMAGE-MGC_LOAD
InterPro Aminopeptidase_N-like_N UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Peptidase_M4/M1_CTD_sf UniProtKB/TrEMBL
  TAF2 UniProtKB/TrEMBL
KEGG Report rno:170844 UniProtKB/TrEMBL
MGC_CLONE MGC:109257 IMAGE-MGC_LOAD
  MGC:124871 IMAGE-MGC_LOAD
NCBI Gene 170844 ENTREZGENE
PANTHER PTHR15137 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2 UniProtKB/TrEMBL
PhenoGen Taf2 PhenoGen
RatGTEx ENSRNOG00000034022 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
  Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
  SSF63737 UniProtKB/TrEMBL
UniProt A6HRG7 ENTREZGENE, UniProtKB/TrEMBL
  F1LNY6 ENTREZGENE, UniProtKB/TrEMBL
  Q3KRD7_RAT UniProtKB/TrEMBL
  Q5BJV8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Taf2  TATA-box binding protein associated factor 2  Taf2  TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27     Taf2  TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Taf2  TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor    TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150 kD  Name updated 1299863 APPROVED
2002-08-07 Taf2  TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150 kD      Symbol and Name status set to provisional 70820 PROVISIONAL