Kpna2 (karyopherin subunit alpha 2)

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Gene: Kpna2 (karyopherin subunit alpha 2) Rattus norvegicus

Analyze

Symbol:

Kpna2

Name:

karyopherin subunit alpha 2

RGD ID:

621419

Description:

Predicted to enable several functions, including histone deacetylase binding activity; nuclear import signal receptor activity; and nuclear localization sequence binding activity. Involved in regulation of transcription by glucose. Predicted to be located in several cellular components, including cytoplasmic stress granule; cytosol; and nucleoplasm. Predicted to be part of NLS-dependent protein nuclear import complex. Predicted to be active in glutamatergic synapse; nucleus; and postsynaptic density. Predicted to be extrinsic component of postsynaptic specialization membrane. Orthologous to human KPNA2 (karyopherin subunit alpha 2); PARTICIPATES IN influenza A pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

importin; importin subunit alpha-1; importin subunit alpha-2; karyopherin (importin) alpha 2; karyopherin alpha 2; MGC108637; nuclear import protein

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KPNA2 (karyopherin subunit alpha 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Kpna2 (karyopherin (importin) alpha 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Kpna2 (karyopherin subunit alpha 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KPNA2 (karyopherin subunit alpha 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KPNA2 (karyopherin subunit alpha 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kpna2 (karyopherin subunit alpha 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KPNA2 (karyopherin subunit alpha 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KPNA2 (karyopherin subunit alpha 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kpna2 (karyopherin subunit alpha 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Kpna2 (karyopherin (importin) alpha 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	KPNA2 (karyopherin subunit alpha 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gm10184 (predicted pseudogene 10184)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	kpna2 (karyopherin alpha 2 (RAG cohort 1, importin alpha 1))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ima-2	Alliance	DIOPT (OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	91,933,951 - 91,946,115 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	91,933,951 - 91,946,150 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	96,991,813 - 97,004,201 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	10	96,454,982 - 96,467,370 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	10	91,856,366 - 91,868,402 (-)	NCBI	Rnor_WKY
Rnor_6.0	10	95,200,029 - 95,212,111 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	95,200,030 - 95,212,111 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	94,940,856 - 94,952,938 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	96,342,214 - 96,352,613 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	96,356,583 - 96,366,983 (-)	NCBI
Celera	10	90,599,417 - 90,611,576 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Animal Disease Models (ISO)

genetic disease (ISO)

lung adenocarcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(S)-amphetamine (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3-methylcholanthrene (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

afimoxifene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

buspirone (EXP)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibric acid (EXP)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cyproterone acetate (EXP)

cytarabine (ISO)

diarsenic trioxide (ISO)

dibenzo[a,l]pyrene (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

dopamine (EXP)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenoldopam (EXP)

finasteride (EXP)

fluoranthene (ISO)

flutamide (EXP)

folic acid (ISO)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

glafenine (EXP)

hydrogen peroxide (ISO)

hydroxyurea (ISO)

ivermectin (ISO)

ketamine (EXP)

lead diacetate (EXP)

lead(0) (ISO)

lead(2+) (ISO)

leflunomide (EXP,ISO)

levofloxacin (EXP)

lidocaine (EXP)

lycopene (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

oxaliplatin (EXP)

ozone (ISO)

palbociclib (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (EXP,ISO)

piroxicam (ISO)

propiconazole (ISO)

raloxifene (ISO)

resveratrol (ISO)

rotenone (EXP)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

testosterone (ISO)

thioacetamide (EXP)

topotecan (EXP)

triadimefon (ISO)

trichloroethene (EXP)

trimellitic anhydride (ISO)

trovafloxacin (EXP)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vancomycin (ISO)

vincaleukoblastine (ISO)

vincristine (ISO)

zinc atom (EXP)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

entry of viral genome into host nucleus through nuclear pore complex via importin (ISO)

intracellular protein transport (TAS)

NLS-bearing protein import into nucleus (IBA,ISO)

positive regulation of viral life cycle (ISO)

postsynapse to nucleus signaling pathway (ISO)

protein import into nucleus (ISO,TAS)

regulation of transcription by glucose (IDA)

Cellular Component

cytoplasmic stress granule (ISO)

cytosol (ISO)

extrinsic component of postsynaptic specialization membrane (ISO)

glutamatergic synapse (ISO)

NLS-dependent protein nuclear import complex (ISO)

nuclear membrane (ISO)

nucleoplasm (ISO)

nucleus (IBA)

postsynaptic density (ISO)

Molecular Function

DNA-binding transcription factor binding (ISO)

histone deacetylase binding (ISO)

nuclear import signal receptor activity (IBA,ISO)

nuclear localization sequence binding (IBA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

influenza A pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Karyopherin alpha2: a control step of glucose-sensitive gene expression in hepatic cells.	Guillemain G, etal., Biochem J 2002 May 15;364(Pt 1):201-9.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:10869435	PMID:12695505	PMID:14675421	PMID:15603742	PMID:15689618	PMID:15719015	PMID:16906019	PMID:17324944	PMID:19946888	PMID:22681889	PMID:26340948	PMID:26526450
PMID:27430620	PMID:28189564	PMID:31904090

Genomics

Comparative Map Data

Kpna2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	91,933,951 - 91,946,115 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	91,933,951 - 91,946,150 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	96,991,813 - 97,004,201 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	10	96,454,982 - 96,467,370 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	10	91,856,366 - 91,868,402 (-)	NCBI	Rnor_WKY
Rnor_6.0	10	95,200,029 - 95,212,111 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	95,200,030 - 95,212,111 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	94,940,856 - 94,952,938 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	96,342,214 - 96,352,613 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	96,356,583 - 96,366,983 (-)	NCBI
Celera	10	90,599,417 - 90,611,576 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

KPNA2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	68,035,735 - 68,046,854 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	17	68,035,636 - 68,047,364 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	66,031,851 - 66,042,970 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	63,462,310 - 63,473,432 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	62,601,848 - 62,612,972 (+)	NCBI		Celera
Cytogenetic Map	17	q24.2	NCBI
HuRef	17	61,416,714 - 61,427,908 (+)	NCBI		HuRef
CHM1_1	17	66,096,665 - 66,107,785 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	68,911,511 - 68,922,628 (+)	NCBI		T2T-CHM13v2.0

Kpna2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	106,879,455 - 106,890,351 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	106,879,455 - 106,890,367 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	106,988,629 - 106,999,525 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	106,988,629 - 106,999,541 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	106,849,943 - 106,860,839 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	106,804,719 - 106,815,615 (-)	NCBI		MGSCv36	mm8
Celera	11	118,719,792 - 118,733,297 (-)	NCBI		Celera
Cytogenetic Map	11	E1	NCBI

Kpna2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	7,121,432 - 7,134,327 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	7,121,432 - 7,134,327 (+)	NCBI	ChiLan1.0	ChiLan1.0

KPNA2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	67,161,908 - 67,173,410 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	67,161,908 - 67,173,410 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	61,968,807 - 61,979,954 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

KPNA2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	12,546,912 - 12,556,163 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	13,442,712 - 13,451,963 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	14,205,539 - 14,214,799 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	14,205,541 - 14,214,742 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	13,154,710 - 13,163,965 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	14,370,477 - 14,379,722 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	14,369,408 - 14,378,660 (+)	NCBI		UU_Cfam_GSD_1.0

Kpna2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	13,965,860 - 13,977,209 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	5,217,362 - 5,228,846 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936541	5,217,389 - 5,228,816 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KPNA2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	14,283,087 - 14,296,746 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	14,283,092 - 14,296,749 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

KPNA2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	53,422,792 - 53,434,693 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	53,423,040 - 53,433,290 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	24,363,548 - 24,375,627 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kpna2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624870	444,558 - 457,872 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624870	444,551 - 457,986 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Kpna2
81 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	36
Count of miRNA genes:	36
Interacting mature miRNAs:	36
Transcripts:	ENSRNOT00000020795
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	66743655	98003205	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	72552416	93995749	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	74372084	94965338	Rat
10450495	Bp383	Blood pressure QTL 383		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	94965338	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	78775516	98279596	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	80515287	101325465	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
4889948	Bss91	Bone structure and strength QTL 91	4		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	10	82564856	92369470	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
12880055	Am11	Aortic mass QTL 11		0.004	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	84007272	95933025	Rat
2301398	Kidm38	Kidney mass QTL 38		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	84007272	95933025	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	84022321	93995963	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	85565469	103884409	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
2313856	Bp342	Blood pressure QTL 342	4.4	0.0001	life span trait (VT:0005372)	age at time of death (CMO:0001193)	10	87307617	96121100	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	88539139	107211142	Rat
12880395	Cm109	Cardiac mass QTL 109		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	90404397	107211142	Rat
12880396	Am13	Aortic mass QTL 13		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	90404397	107211142	Rat
12880398	Kidm67	Kidney mass QTL 67		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	90404397	107211142	Rat
12880384	Cm107	Cardiac mass QTL 107		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)		90404397	107211142	Rat
12880385	Cm108	Cardiac mass QTL 108		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)		90404397	107211142	Rat
1579915	Bp280	Blood pressure QTL 280		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90404397	107211142	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	90627439	107057807	Rat
724530	Bp149	Blood pressure QTL 149		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90627439	107211142	Rat
1558652	Bw57	Body weight QTL 57	4.2	0.0008	body mass (VT:0001259)	body weight (CMO:0000012)	10	90910316	107211142	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91228102	104060283	Rat

Markers in Region

PMC109067P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	10	q32.1	UniSTS

RH133348

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	10	q32.1	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	51	41	19	41		1	66	33	39	11
Low			6				8	10	8	2	2		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001270802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_053483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ130946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY779026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC062026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM083931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM115539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000020795 ⟹ ENSRNOP00000020795

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	91,933,951 - 91,946,150 (-)	Ensembl
Rnor_6.0 Ensembl	10	95,200,030 - 95,212,111 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000100211 ⟹ ENSRNOP00000076768

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	91,934,045 - 91,946,118 (-)	Ensembl

RefSeq Acc Id:

NM_001270802 ⟹ NP_001257731

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	91,933,951 - 91,946,115 (-)	NCBI
Rnor_6.0	10	95,200,029 - 95,212,111 (-)	NCBI
Rnor_5.0	10	94,940,856 - 94,952,938 (-)	NCBI
Celera	10	90,599,417 - 90,611,576 (-)	NCBI

Sequence:

show sequence

ACAAAGTCTGAGGGCTGAGGGCTAGTGGACGTTTCGACAGCCGCCGACCCGCAGCTTGAGAGCC
CTGCACCGACTTTCGTGGAAGTCTGAACCGGCTGTGCAGCTTTCCTTCCTCCTTGTTCCTGCAG
CAACCATGTCCACCAATGAGAATGCTAACTCAACAGCTGCCCGGCTTAACAGATTCAAGAACAA
GGGGAAAGACAGTACAGAAATGCGGCGCCGCCGAATAGAGGTTAATGTGGAACTTAGGAAAGCT
AAAAAAGATGACCAGATGCTGAAAAGGAGGAATGTCAGCTCATTCCCTGATGACGCTACTTCTC
CACTACAGGAAAACCGAAACAACCAGGGTACTGTAAATTGGTCTGTTGAGGACATTGTTAAAGG
CATAAACAGTAACAATTTGGAAAGCCAGCTCCAAGCTACTCAAGCTGCTCGGAAACTGCTTTCA
AGAGAGAAGCAGCCTCCTATAGACAACATCATCCGGGCTGGTTTGATCCCAAAATTTGTGTCCT
TCTTGGGCAAAACGGATTGTAGTCCCATTCAGTTTGAATCTGCTTGGGCGCTCACCAACATTGC
TTCTGGAACATCCGAACAGACCAAAGCTGTGGTGGATGGAGGTGCTATCCCAGCATTTATTTCT
CTCTTGGCGTCGCCCCATGCTCACATCAGCGAGCAAGCTGTGTGGGCTCTTGGAAACATTGCAG
GTGATGGCTCAGTTTTCCGAGACTTGGTTATCAAACATGGTGCAATTGACCCACTGTTGGCACT
TCTCGCAGTTCCTGATCTGTCATCCTTGGCATGTGGTTACTTGCGGAATCTTACCTGGACACTT
TCAAACCTCTGTCGGAACAAGAATCCCGCACCCCCCTTAGATGCTGTTGAGCAGATCCTTCCTA
CTCTAGTTCGACTCCTACACCACAACGATCCAGAAGTATTAGCAGACTCCTGCTGGGCCATTTC
CTATCTGACTGATGGGCCGAATGAGCGCATCGAGATGGTTGTGAAGAAGGGAGTTGTTCCCCAA
CTTGTGAAGCTTTTAGGAGCTACTGAACTGCCCATTGTGACGCCGGCACTGAGAGCCATAGGGA
ATATTGTCACCGGAACAGATGAACAGACTCAGAAAGTGATCGATGCAGGGGCACTTGCAGTCTT
TCCCAGCCTGCTGACAAACCCCAAAACTAATATTCAGAAGGAGGCCACATGGACAATGTCGAAC
ATTACCGCCGGGCGCCAGGACCAGATACAGCAAGTGGTGAATCACGGCCTCGTCCCATTTCTCG
TTGGTGTCCTCTCTAAGGCAGACTTTAAGACACAGAAGGAAGCCGCATGGGCTATAACCAACTA
CACCAGCGGCGGGACTGTTGAACAGATTGTGTATCTGGTTCATTGTGGAATAATAGAACCCTTG
ATGAACCTCTTGAGTGCAAAAGATACCAAAATTATTCAGGTTATTCTTGATGCTATTTCAAATA
TCTTTCAGGCTGCAGAGAAACTAGGTGAGACAGAAAAACTCAGTATAATGATTGAAGAGTGTGG
AGGCTTGGATAAAATTGAAGCCCTACAGAGCCATGAGAACGAGTCTGTGTACAAGGCCTCGTTG
AACCTAATTGAGAAGTACTTCTCAGTGGAGGAAGAGGAAGATCAAAATGTGGTGCCAGAAACTA
CCTCTGAAGGCTTCGCCTTCCAAGTTCAGGATGGAGCTCCCGGGACCTTTAACTTCTAATGTCC
AGCCAAAGCACAAAGTTGTTAGCTATGTGCTGTGCTGTGCTGTGTTCTCATAAATTTGTCTTAC
TGTTTCTCTACTAAGAACTCTTTTTAAATGTGGTTTGTTATTGTAGCACTTTTTACAAAAGAAA
CTATACTTGAACAGTTATAAACTGTACATACTCTATGAAGCTGTCCTCTGAGTTTATTTCTATG
TGGAATTTCGTACCCTGTCGTGTCCTGTAAATAAAGATTTAAGTTCCATTCTTCTTTAAAAAAA
AAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_053483 ⟹ NP_445935

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	91,933,951 - 91,946,115 (-)	NCBI
Rnor_6.0	10	95,200,029 - 95,212,111 (-)	NCBI
Rnor_5.0	10	94,940,856 - 94,952,938 (-)	NCBI
RGSC_v3.4	10	96,342,214 - 96,352,613 (-)	RGD
Celera	10	90,599,417 - 90,611,576 (-)	NCBI

Sequence:

show sequence

ACAAAGTCTGAGGGCTGAGGGCTAGTGGACGTTTCGACAGCCGCCGACCCGCAGCTTGAGAGCC
CTGCACCGACTTTCGTGGAAGTCTGAACCGGCTGTGCAGCAACCATGTCCACCAATGAGAATGC
TAACTCAACAGCTGCCCGGCTTAACAGATTCAAGAACAAGGGGAAAGACAGTACAGAAATGCGG
CGCCGCCGAATAGAGGTTAATGTGGAACTTAGGAAAGCTAAAAAAGATGACCAGATGCTGAAAA
GGAGGAATGTCAGCTCATTCCCTGATGACGCTACTTCTCCACTACAGGAAAACCGAAACAACCA
GGGTACTGTAAATTGGTCTGTTGAGGACATTGTTAAAGGCATAAACAGTAACAATTTGGAAAGC
CAGCTCCAAGCTACTCAAGCTGCTCGGAAACTGCTTTCAAGAGAGAAGCAGCCTCCTATAGACA
ACATCATCCGGGCTGGTTTGATCCCAAAATTTGTGTCCTTCTTGGGCAAAACGGATTGTAGTCC
CATTCAGTTTGAATCTGCTTGGGCGCTCACCAACATTGCTTCTGGAACATCCGAACAGACCAAA
GCTGTGGTGGATGGAGGTGCTATCCCAGCATTTATTTCTCTCTTGGCGTCGCCCCATGCTCACA
TCAGCGAGCAAGCTGTGTGGGCTCTTGGAAACATTGCAGGTGATGGCTCAGTTTTCCGAGACTT
GGTTATCAAACATGGTGCAATTGACCCACTGTTGGCACTTCTCGCAGTTCCTGATCTGTCATCC
TTGGCATGTGGTTACTTGCGGAATCTTACCTGGACACTTTCAAACCTCTGTCGGAACAAGAATC
CCGCACCCCCCTTAGATGCTGTTGAGCAGATCCTTCCTACTCTAGTTCGACTCCTACACCACAA
CGATCCAGAAGTATTAGCAGACTCCTGCTGGGCCATTTCCTATCTGACTGATGGGCCGAATGAG
CGCATCGAGATGGTTGTGAAGAAGGGAGTTGTTCCCCAACTTGTGAAGCTTTTAGGAGCTACTG
AACTGCCCATTGTGACGCCGGCACTGAGAGCCATAGGGAATATTGTCACCGGAACAGATGAACA
GACTCAGAAAGTGATCGATGCAGGGGCACTTGCAGTCTTTCCCAGCCTGCTGACAAACCCCAAA
ACTAATATTCAGAAGGAGGCCACATGGACAATGTCGAACATTACCGCCGGGCGCCAGGACCAGA
TACAGCAAGTGGTGAATCACGGCCTCGTCCCATTTCTCGTTGGTGTCCTCTCTAAGGCAGACTT
TAAGACACAGAAGGAAGCCGCATGGGCTATAACCAACTACACCAGCGGCGGGACTGTTGAACAG
ATTGTGTATCTGGTTCATTGTGGAATAATAGAACCCTTGATGAACCTCTTGAGTGCAAAAGATA
CCAAAATTATTCAGGTTATTCTTGATGCTATTTCAAATATCTTTCAGGCTGCAGAGAAACTAGG
TGAGACAGAAAAACTCAGTATAATGATTGAAGAGTGTGGAGGCTTGGATAAAATTGAAGCCCTA
CAGAGCCATGAGAACGAGTCTGTGTACAAGGCCTCGTTGAACCTAATTGAGAAGTACTTCTCAG
TGGAGGAAGAGGAAGATCAAAATGTGGTGCCAGAAACTACCTCTGAAGGCTTCGCCTTCCAAGT
TCAGGATGGAGCTCCCGGGACCTTTAACTTCTAATGTCCAGCCAAAGCACAAAGTTGTTAGCTA
TGTGCTGTGCTGTGCTGTGTTCTCATAAATTTGTCTTACTGTTTCTCTACTAAGAACTCTTTTT
AAATGTGGTTTGTTATTGTAGCACTTTTTACAAAAGAAACTATACTTGAACAGTTATAAACTGT
ACATACTCTATGAAGCTGTCCTCTGAGTTTATTTCTATGTGGAATTTCGTACCCTGTCGTGTCC
TGTAAATAAAGATTTAAGTTCCATTCTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001257731	(Get FASTA)	NCBI Sequence Viewer
	NP_445935	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH62026	(Get FASTA)	NCBI Sequence Viewer
	AAH89787	(Get FASTA)	NCBI Sequence Viewer
	AAX07453	(Get FASTA)	NCBI Sequence Viewer
	CAB37408	(Get FASTA)	NCBI Sequence Viewer
	EDM06420	(Get FASTA)	NCBI Sequence Viewer
	EDM06421	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_445935 ⟸ NM_053483

- UniProtKB:

Q6P6T9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTNENANSTAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPL
QENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL
GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD
GSVFRDLVIKHGAIDPLLALLAVPDLSSLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL
VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI
VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG
VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF
QAAEKLGETEKLSIMIEECGGLDKIEALQSHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS
EGFAFQVQDGAPGTFNF

hide sequence

RefSeq Acc Id:

NP_001257731 ⟸ NM_001270802

- UniProtKB:

Q6P6T9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTNENANSTAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPL
QENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL
GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD
GSVFRDLVIKHGAIDPLLALLAVPDLSSLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL
VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI
VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG
VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF
QAAEKLGETEKLSIMIEECGGLDKIEALQSHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS
EGFAFQVQDGAPGTFNF

hide sequence

RefSeq Acc Id:

ENSRNOP00000020795 ⟸ ENSRNOT00000020795

RefSeq Acc Id:

ENSRNOP00000076768 ⟸ ENSRNOT00000100211

Protein Domains

IBB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P6T9-F1-model_v2	AlphaFold	Q6P6T9	1-529	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697848

Promoter ID:

EPDNEW_R8373

Type:

single initiation site

Name:

Kpna2_1

Description:

karyopherin subunit alpha 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	95,212,113 - 95,212,173	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621419	AgrOrtholog
BioCyc Gene	G2FUF-22916	BioCyc
Ensembl Genes	ENSRNOG00000015329	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000020795	ENTREZGENE
	ENSRNOP00000020795.3	UniProtKB/TrEMBL
	ENSRNOP00000076768.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000020795	ENTREZGENE
	ENSRNOT00000020795.7	UniProtKB/TrEMBL
	ENSRNOT00000100211.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.690	UniProtKB/TrEMBL
	1.25.10.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5621957	IMAGE-MGC_LOAD
	IMAGE:7326072	IMAGE-MGC_LOAD
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	Arm_3	UniProtKB/TrEMBL
	Armadillo	UniProtKB/TrEMBL
	Importin-a-like_IBB-bd_dom	UniProtKB/TrEMBL
	Importin-a_IBB_sf	UniProtKB/TrEMBL
	Importing_su_alpha	UniProtKB/TrEMBL
KEGG Report	rno:85245	UniProtKB/TrEMBL
MGC_CLONE	MGC:108637	IMAGE-MGC_LOAD
	MGC:72360	IMAGE-MGC_LOAD
NCBI Gene	85245	ENTREZGENE
PANTHER	IMPORTIN ALPHA	UniProtKB/TrEMBL
	IMPORTIN SUBUNIT ALPHA-1	UniProtKB/TrEMBL
Pfam	Arm	UniProtKB/TrEMBL
	Arm_3	UniProtKB/TrEMBL
	IBB	UniProtKB/TrEMBL
PhenoGen	Kpna2	PhenoGen
PIRSF	Importin_alpha	UniProtKB/TrEMBL
PROSITE	ARM_REPEAT	UniProtKB/TrEMBL
	IBB	UniProtKB/TrEMBL
SMART	ARM	UniProtKB/TrEMBL
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	A0A8I5Y0C8_RAT	UniProtKB/TrEMBL
	Q6P6T9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-11	Kpna2	karyopherin subunit alpha 2	Kpna2	karyopherin alpha 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-12-15	Kpna2	karyopherin alpha 2	Kpna2	karyopherin (importin) alpha 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Kpna2	karyopherin (importin) alpha 2			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Kpna2	karyopherin (importin) alpha 2			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_function	regulates glucose-sensitive gene expression by transmitting a signal to the nucleus	633087

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)