Plod1 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1) - Rat Genome Database

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Gene: Plod1 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1) Rattus norvegicus
Analyze
Symbol: Plod1
Name: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
RGD ID: 621382
Description: Enables several functions, including L-ascorbic acid binding activity; ferrous iron binding activity; and procollagen-lysine 5-dioxygenase activity. Involved in cellular response to hormone stimulus; peptidyl-lysine hydroxylation; and response to hypoxia. Predicted to be located in rough endoplasmic reticulum membrane. Predicted to be part of catalytic complex. Predicted to be active in endoplasmic reticulum. Biomarker of hypothyroidism. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome kyphoscoliotic type 1. Orthologous to human PLOD1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1); PARTICIPATES IN lysine degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LH1; lysyl hydroxylase 1; Plod; procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1; procollagen-lysine 2-oxoglutarate 5-dioxygenase (lysine hydroxylase Ehlers-Danlos syndrome type VI); procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI); procollagen-lysine,2-oxoglutarate 5-dioxygenase 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Plod1em1Mcwi  
Genetic Models: SS-Plod1em1Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25158,340,674 - 158,367,581 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5158,340,490 - 158,367,620 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5161,057,429 - 161,084,332 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05162,884,948 - 162,911,870 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05162,841,286 - 162,868,216 (-)NCBIRnor_WKY
Rnor_6.05164,720,629 - 164,747,071 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5164,720,587 - 164,747,083 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05168,379,092 - 168,405,534 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45164,987,252 - 165,012,581 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15164,997,439 - 165,022,772 (-)NCBI
Celera5156,623,980 - 156,649,807 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Rat lysyl hydroxylase: molecular cloning, mRNA distribution and expression in a baculovirus system. Armstrong LC and Last JA, Biochim Biophys Acta 1995 Oct 17;1264(1):93-102.
2. Thyroid hormone decreases thyrotropin subunit mRNA levels in rat anterior pituitary. Croyle ML and Maurer RA, DNA 1984 Jun;3(3):231-6.
3. Analysis of the organization and nucleotide sequence of the chromosomal gene for the beta-subunit of rat thyrotropin. Croyle ML, etal., DNA 1986 Aug;5(4):299-304.
4. Identifying multiple causative genes at a single GWAS locus. Flister MJ, etal., Genome Res. 2013 Dec;23(12):1996-2002. doi: 10.1101/gr.160283.113. Epub 2013 Sep 4.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Oxygen tension regulates the expression of a group of procollagen hydroxylases. Hofbauer KH, etal., Eur J Biochem 2003 Nov;270(22):4515-22.
7. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. GOA pipeline RGD automated data pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Differential expression of procollagen lysine 2-oxoglutarate 5-deoxygenase and matrix metalloproteinase isoforms in hypothyroid rat ovary and disintegration of extracellular matrix. Saha SK, etal., Endocrinology. 2005 Jul;146(7):2963-75. Epub 2005 Apr 7.
16. Mechanism of inhibition of lysyl hydroxylase activity by the organophosphates malathion and malaoxon. Samimi A and Last JA, Toxicol Appl Pharmacol. 2001 Nov 1;176(3):181-6.
Additional References at PubMed
PMID:8449506   PMID:8621606   PMID:8889548   PMID:9724729   PMID:10934207   PMID:15174142   PMID:19056867   PMID:27119146  


Genomics

Comparative Map Data
Plod1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25158,340,674 - 158,367,581 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5158,340,490 - 158,367,620 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5161,057,429 - 161,084,332 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05162,884,948 - 162,911,870 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05162,841,286 - 162,868,216 (-)NCBIRnor_WKY
Rnor_6.05164,720,629 - 164,747,071 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5164,720,587 - 164,747,083 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05168,379,092 - 168,405,534 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45164,987,252 - 165,012,581 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15164,997,439 - 165,022,772 (-)NCBI
Celera5156,623,980 - 156,649,807 (-)NCBICelera
Cytogenetic Map5q36NCBI
PLOD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,934,717 - 11,975,537 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl111,934,205 - 11,975,538 (+)EnsemblGRCh38hg38GRCh38
GRCh37111,994,774 - 12,035,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,917,333 - 11,958,181 (+)NCBINCBI36Build 36hg18NCBI36
Build 34111,929,011 - 11,969,860NCBI
Celera111,108,411 - 11,149,258 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef111,149,615 - 11,190,362 (+)NCBIHuRef
CHM1_1111,982,590 - 12,023,381 (+)NCBICHM1_1
T2T-CHM13v2.0111,478,837 - 11,519,656 (+)NCBIT2T-CHM13v2.0
Plod1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394147,994,210 - 148,021,233 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4147,994,210 - 148,021,224 (-)EnsemblGRCm39 Ensembl
GRCm384147,909,753 - 147,936,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4147,909,753 - 147,936,767 (-)EnsemblGRCm38mm10GRCm38
MGSCv374147,283,862 - 147,310,885 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364146,753,861 - 146,780,504 (-)NCBIMGSCv36mm8
Celera4150,174,511 - 150,201,195 (-)NCBICelera
Cytogenetic Map4E1NCBI
cM Map478.57NCBI
Plod1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554861,967,167 - 1,990,561 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554861,967,771 - 1,990,561 (-)NCBIChiLan1.0ChiLan1.0
PLOD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1111,900,881 - 11,941,308 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl111,900,881 - 11,941,308 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0110,684,608 - 10,725,376 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PLOD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,320,529 - 84,343,562 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl284,320,529 - 84,343,562 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha280,853,098 - 80,876,054 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0284,981,087 - 85,004,061 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl284,980,603 - 85,004,654 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1281,730,741 - 81,753,653 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0282,730,771 - 82,753,652 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0283,796,533 - 83,819,467 (-)NCBIUU_Cfam_GSD_1.0
Plod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505834,916,884 - 34,938,512 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936474746,922 - 765,585 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936474740,582 - 763,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLOD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl671,988,459 - 72,021,804 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1671,987,938 - 72,019,712 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2665,898,212 - 65,928,890 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLOD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120119,824,380 - 119,865,866 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605423,682,782 - 23,725,813 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plod1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248181,071,505 - 1,092,237 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248181,070,841 - 1,092,346 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plod1
126 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:72
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000010433
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat

Markers in Region
BI275190  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25158,340,889 - 158,341,054 (+)MAPPERmRatBN7.2
Rnor_6.05164,720,845 - 164,721,009NCBIRnor6.0
Rnor_5.05168,379,308 - 168,379,472UniSTSRnor5.0
RGSC_v3.45164,987,463 - 164,987,627UniSTSRGSC3.4
Celera5156,624,196 - 156,624,360UniSTS
RH 3.4 Map51106.9UniSTS
Cytogenetic Map5q36UniSTS
MARC_65458-65459:1186500885:3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25158,347,887 - 158,348,624 (+)MAPPERmRatBN7.2
Rnor_6.05164,727,842 - 164,728,578NCBIRnor6.0
Rnor_5.05168,386,305 - 168,387,041UniSTSRnor5.0
RGSC_v3.45164,994,460 - 164,995,196UniSTSRGSC3.4
Celera5156,631,193 - 156,631,929UniSTS
Cytogenetic Map5q36UniSTS


Genetic Models
This gene Plod1 is modified in the following models/strains

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 51 41 13 41 6 9 73 35 35 11 6
Low 6 6 2 2 1 6 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000010433   ⟹   ENSRNOP00000010433
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5158,340,490 - 158,367,582 (-)Ensembl
Rnor_6.0 Ensembl5164,720,587 - 164,747,083 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097241   ⟹   ENSRNOP00000080105
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5158,358,267 - 158,367,620 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114261   ⟹   ENSRNOP00000088453
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5158,340,490 - 158,364,025 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117604   ⟹   ENSRNOP00000087676
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5158,340,490 - 158,363,862 (-)Ensembl
RefSeq Acc Id: NM_053827   ⟹   NP_446279
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25158,340,674 - 158,367,581 (-)NCBI
Rnor_6.05164,720,629 - 164,747,071 (-)NCBI
Rnor_5.05168,379,092 - 168,405,534 (-)NCBI
RGSC_v3.45164,987,252 - 165,012,581 (-)RGD
Celera5156,623,980 - 156,649,807 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039109144   ⟹   XP_038965072
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25158,340,678 - 158,359,944 (-)NCBI
Protein Sequences
Protein RefSeqs NP_446279 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965072 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL81085 (Get FASTA)   NCBI Sequence Viewer  
  Q63321 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_446279   ⟸   NM_053827
- Peptide Label: precursor
- UniProtKB: D3ZQ74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000010433   ⟸   ENSRNOT00000010433
RefSeq Acc Id: XP_038965072   ⟸   XM_039109144
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000080105   ⟸   ENSRNOT00000097241
RefSeq Acc Id: ENSRNOP00000087676   ⟸   ENSRNOT00000117604
RefSeq Acc Id: ENSRNOP00000088453   ⟸   ENSRNOT00000114261
Protein Domains
Fe2OG dioxygenase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63321-F1-model_v2 AlphaFold Q63321 1-728 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694251
Promoter ID:EPDNEW_R4776
Type:multiple initiation site
Name:Plod1_1
Description:procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05164,747,054 - 164,747,114EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621382 AgrOrtholog
BioCyc Gene G2FUF-39204 BioCyc
Ensembl Genes ENSRNOG00000007763 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000010433 ENTREZGENE
  ENSRNOP00000010433.6 UniProtKB/TrEMBL
  ENSRNOP00000080105.1 UniProtKB/TrEMBL
  ENSRNOP00000087676.1 UniProtKB/TrEMBL
  ENSRNOP00000088453.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010433 ENTREZGENE
  ENSRNOT00000010433.8 UniProtKB/TrEMBL
  ENSRNOT00000097241.1 UniProtKB/TrEMBL
  ENSRNOT00000114261.1 UniProtKB/TrEMBL
  ENSRNOT00000117604.1 UniProtKB/TrEMBL
InterPro IPNS-like_FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Oxoglu/Fe-dep_dioxygenase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pro_4_hyd_alph UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Procol_lys_dOase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:116552 UniProtKB/TrEMBL
NCBI Gene 116552 ENTREZGENE
Pfam 2OG-FeII_Oxy UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Plod1 PhenoGen
PROSITE FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LYS_HYDROXYLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART P4Hc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZPY4_RAT UniProtKB/TrEMBL
  A0A8I6GFD5_RAT UniProtKB/TrEMBL
  A0A8I6GH39_RAT UniProtKB/TrEMBL
  D3ZQ74 ENTREZGENE, UniProtKB/TrEMBL
  PLOD1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-09 Plod1  procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1  Plod1  procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Plod1  procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1  Plod  procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI)  Symbol and Name updated 1299863 APPROVED
2002-08-07 Plod  procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI)      Symbol and Name status set to provisional 70820 PROVISIONAL